Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0621900 | OGI:03068300 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:23592134-23597431 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAGTAAGAGCGGTGGGAGATGCAGCAAGGAGGGAGACGATGCATATTTCGACTGGAACCGTACCAATGGGGAAGACAAACATTTCTTCAAGGTCATGCTTGGTGATTTCCATGAAAGAGTGGTAAGCTCTTTGTTCTGCGCCGGCCTTTTGGGGTCTTATCTGTTACTACCTACGTTCAGCTTACCAGACTTTCTAGCATTGCCCCCGTATATATATGTGTGTATATATATATATATATATATATATATGTTGATGAATCTAGATATTATATATGTGACTAGATTTATTAACATATCTCTATATAGGGTCCAATTCCTGGTCTCTCATTGGGCCACGTGGCCTCATGCATTGCGCTCTGTTTCAATTCTCAGCTGAAAAACATGCCACGTATTCGCACCATCTCACAGCCGTTAGATGGCATATCAACGGTGAAAGAAACTTTAAGATAGATAGAGAAATTACTTATGGTAAAAAAATTGCAATAGGAAATAGAGGACCTTCCCGAAGAGAGGAGAACTCTCCGGAGCATAGATTCATATACAGATGCCTTGTGACAAACCAACCTCATATATAAACCCGAAAATTAGTGAAAAAGAACATACCAAATAAATCATTGATTTATCTACAGGTGCATTGTGACAAACAATCTCACAAACAAATTCGAAATTCAATAAAAAAAAGACCAAATAAATCATGGATTCATCTAGAAGAAAATTACAATGAAAATAGAGAACACCGAACCCTAGATTCATCCAGGGTAAGGAAAAATTACAGGAAAATCGAGAAGAGGAAACAAAGAAAGATTAAAAAAAGAACACACAACAGAAGTGAGCTGGGGTGGTTCATCAGCGTCCTCGGGCAGCTTGAACTCCATGACAAGGGAAGGTGGCCAACACAGATCTCTCCTGCGAAAGAATAGTCAATGGTGTCGGACCTAAGCACCCCATGGTTACGTCCTAAACTTCTCACTGCTACAGAGATTAATCAAGATATGAAGGGGATGGGAAGGAACGGACAATCTGTACTACCAACTATTTTAGATTTGGCGAAGAGGAAGGAAAGGAGAGAAACAAGAGGGAAATTCAGGGGAACGAGATGGCTCTTCATTTTTTTTCCCTTGTCCTCTGTGGATTTTAAAATGGATAAGCCCAAAGGAAAGCATACGTGCCGTCATAAGGGCTCGTGAGTGGTGAGTTGTGACTCTCGCCGTGTTTATTTCTTCGAACTTTTAACTTTTTCATCACATCAAAACTTTTCTATAAACATAAACTTTTAACTTTTCCATCAAATCGTTCTAATTTCAACCAAACTTCCAATTTTAATGTGAACTAAACACATCAAAACTTTTCTACACACATAATTCTATAGATATGTCTGCCAGGCTGAGTCTAGCTATCTACCGAAATAGTACGAAGTAAGACATAAAAAATATATAAATATAAATGGGCCGGAAGTCTGGGAAAAATGATTTAGCTTGGGCAATTGGGAAAGAAATCAAAAGAATAAAAAGAAAATAAAAAGGGTGAAAATATTCGGATTTTCATGTAAATACATATACGCCGTACAATATATTAATAAAAAAAATAATAAGTAAAATTTTTATGTTTATGTTCTTAGGCTGGGTTCGTTTAAGGAGGATGAGAACTACTCCCTCCCGCACGGCAAATGGAGCGGTCCCTTAGCATGTGATTAATTAAGTATAAAGTATTAGCTTTTTTAAAAAAAATGGATCAATATAATTATTTAAGCAACTATAAAAAAAACTTTTTTTAAAAAAACATATTGTTTCAGTTCGAAAAGCGTGCGTGCGAAAAACAAGAGGGGGAGTTGGAACCCAATGCAGCCTTAGTGATTTAAGTCCTAATGCTAAAAAATAAACTTCAATAAAAAATTAAAATCAACATAATTTAAAAATTAAGTTTCAAAATTCAAATTTTGCGGTGGTTGATTTGGTATGGAGAAAATAATGGGGCATAATACACCTTAAATTTAAGGTAAGTGCGAAGCATCTTAATTAATGTCCTATGCTCGGTAAATGACGTCATGGGTTTGTCTCAAGTCATTTTTTAAAAAAATAACTAAGTTTATTAAACGCAGTAACATCTATAATATCAAATTAATTTCATTAAATACCACCAGCAAATACGCTTTTATAATACATTTTTGTGTTGAAAATTCCACCAGATTTTTCTATGAACTTAAAAGGTATTTAACCTAGCATAGACCCAAAATACTTTGCAATTTCGAACGGAGGGAATATAAGATACTCCCTTCATCCCTTAATATAAGGGATTTTGATATTCTGTTTACACTGTTTGATCATTCGTCTTATTCAAAAAATTTTAAAATTATTATTTATTTTATTTGTGACTTACTTTATTACCCAAAGTACTTTAAGCATAAATTTTCGTTTTTTATATTTACACAAATCTTTTGAATAAGACAAGTGGTCAAACAGTGCAAGCAAAATGTTAAAATTATATAAGAGACGGATGGAGTATAAACAAGAGATAGTAGGGACAAAACATATTCCCTGGTGATAAAAACACATTTATATTATAATATGTATATCTTACTTTTCTAGCTAAACATTTCCTACTCCCTCTTGCACATTTAAGAAATGGTTCAATCAAAATTTGAAAGTTGTGATGATAAATTTCATATCAAAATAAATTTATAAAATTTAATAAAAGTCATTATTGAATTTATGGTTTGTACGCATGTACAGGCTCATTAGTGTGTGCGTCAACAGACGTGCTGATTTTCTAGTATATATGAATGTGGGCAATGCTAGAAAGTCTTGTAATATGAAACGGAGGAAGTATGAGTTACTCAGTAGGTTAACATGTGTAGTAGCAAATTAGTGATTTAATTACATTTTGCTCTAACTTAGGAGTATGTATTATCTATCTGATCCCAAAGCTTAACTAGTAGTTACTATTCCCTCTGACTCAAAATATAACAATAGGATTAGTAGTACTAGTATAGAATATTAGGTTGCTATATTTTAGAGCGGAGGTGGAAGTATATTTTTATAAAACGAAATTACTAATTTGATTTACAACAAAACGAATTAATGGCGTTTAGAATCCATGCAGTCAACCGTTTATATTTCCCAGGTCCGAAGTATGTATGTATGTAGAAATTATCTAATTCGCCCCATGAAAACTATTTCTTTCAGGTGACCATGAAACTATATTAAATCACTTTTCTAGGATTTCATGCAGTTAATTTTTCTATTTATTTAGCATATTATAATAATAGTATAACCAATGGTGAAAATCTTAAAAACAACATTAAGGGCAACAACAATGCTTAAGGTCTTGGTGAAAATAAGGTAGGTCCCACCATACCCTATATCCATGGCTACAATGTTTAAGGCAATAATATATGTTAAGATGGGTCCCACATCTATGTAAACAAATTCTATTTTAAGGTAGGTCCCACCATACCATAATATATTCTCATCTTTTTTAGTGTGTATGTGTGCTTTATCTCATTATTTTATTTATTAAGGTTGAGCCTATTTTTAACATTTAGTGTCTTATGTCTAATGCCTATAATGTATATGGCTAGTCATAAGGTTTATGACTCAATTTTATGACACATTGTGGATACCCTAACTATTTATTGGTTCGTCACCATATTCGACAACCGTACTCTAATACAGAACTTTCAGGACCGAAACATAATTAATTTAGTAACCATGTACGCAAATACGCAATTCCTTTCTATTTTGCATCTGAATGAATTTAGCTCCATGACAACTAAGCATGCTTAATTTTCACGTAGACAATGATGTTTAATTGTACTCCCTCCTTTTTTTAATATATAACATTGTTGACTTTTATTACAAACATTGACATTTATTTTATTCAAAAAGTTTTGTGCAAATCTTAAAAATATGGTGTAAAAAATTAACAGCATTATATATTAAAAAATAGAGGTAGTATCAAATTAAACAAACTCTTGATTTTGGCAAAGTTACTCTACTGCTTGTCTCGTCTGCTTCCGTTCCCCTAAGAGCTCTGTTTACTATGTTGTTGCAGACAATACCGAATGAATTTCTACATAATTTCGGGGGCAAAATACCAAAATCTATTAAGCTGGAAACACGCAGCGGCCTCACTTTTGATGTTCAGGTTACCAAGAATTCTGGCAGAGTAGTCCTTCAATCAGGTTGGGCATCATATGTCAGTGCCCATGATCTGAAAATTGGGGACTTCTTGGTATTCAAGTACAGTGGTGACTCTCAACTGAAGACTCTAATCTTTGATTCGAGTGGTTGCGAGAAAGTATGTGAAAAACCTGTTGACATGTCAGGCAGATCTTACGATATTGCCATGAGAAACTCACAAGATGAAAAGAAGAAACGGAAGCAAAGGGATATCTCAAGGCAGGGGACAGTGAAGCCATCAGGTTATATAAGTATAGTGATGTTAAACTTAAAAAAGCATTGAGAGTACATTTAGAGTCCCTTTACATCATATTTTATTTTTGATATTATGTTGTGCTTCATCTTCAGAAGAAGGTCTGAAAGCGGAACTTGTACCGGGTTGCATCCTCCCATCCCGGACCGATCTTACTCGTTTGCAGAAGAATATACTGATAGAGAAGGTGAAAGCTATTAATTCTGAAACCCCAATCTATGGGTATGTCATGAACAATAGCAGTATTCATGGGATTCCTTGTACCGTGGTGAGTTAAAGTTTCTGTTCTTGAATATTGAATATTCTTGCCCTCTGTTCGCTCCAAAAAAAAAAAAGAAAAATCATATTTTGTGTTCTCAAGTCTCAACCAAAGTTCTATTTGAGTCAATATCACCCTTTGCCTATTGAAGGTTATACGATGCACTAGCAAATTAAAAGGTTATACGACGCGATAGTAAACTAAATGTTGTAACTGGACTGGAAATGTTTTACTTTGTCTGAAACTCTATGACTGCAAATTGTATGGAGGAGACATGTTATATTTACTAGTAGTAGTATTTTATTTCATTCTATTTCAATCTTCCTAGCTAAATTCGATCTTTTTCCCTTTCAATTAGGAAATTTCTAAGAAATATGCCGATGTATATCTCCCATTTGAGGATGGAACAGTCGTGCTTCAACATCATGGCAAGAGTTGGAATGTGCGGTGTTGTCTTACTAAGCAAAACTCGAAAAGGTTTTTGAAAGGGTGGAGACAGTTTGCAGGTGACAACAAGCTGCACCTGGGAGATATCTGCCTCTTCGACCTACTGAAAGACAAGAAGAAATATGTGATGGATGTCCATATCATTCGCAGAAAATGAAA
More
|
||||||||||
| CDS seq | ATGAGTAAGAGCGGTGGGAGATGCAGCAAGGAGGGAGACGATGCATATTTCGACTGGAACCGTACCAATGGGGAAGACAAACATTTCTTCAAGGTCATGCTTGGTGATTTCCATGAAAGAGTGACAATACCGAATGAATTTCTACATAATTTCGGGGGCAAAATACCAAAATCTATTAAGCTGGAAACACGCAGCGGCCTCACTTTTGATGTTCAGGTTACCAAGAATTCTGGCAGAGTAGTCCTTCAATCAGGTTGGGCATCATATGTCAGTGCCCATGATCTGAAAATTGGGGACTTCTTGGTATTCAAGTACAGTGGTGACTCTCAACTGAAGACTCTAATCTTTGATTCGAGTGGTTGCGAGAAAGTATGTGAAAAACCTGTTGACATAAACGGAAGCAAAGGGATATCTCAAGGCAGGGGACAGTGA
More
|
||||||||||
| Protein seq | MSKSGGRCSKEGDDAYFDWNRTNGEDKHFFKVMLGDFHERVTIPNEFLHNFGGKIPKSIKLETRSGLTFDVQVTKNSGRVVLQSGWASYVSAHDLKIGDFLVFKYSGDSQLKTLIFDSSGCEKVCEKPVDINGSKGISQGRGQ |
||||||||||
| Function | Putative B3 domain-containing protein Os03g0621600 [UniProtKB/Swiss-Prot:Q851V1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0621900 | OsNip_03t0621900-00 | Chr03 | 23592134 | 23597431 | + | RAP2018-11-26 | ||
| CDS seq | ATGAGTAAGAGCGGTGGGAGATGCAGCAAGGAGGGAGACGATGCATATTTCGACTGGAACCGTACCAATGGGGAAGACAAACATTTCTTCAAGGTCATGCTTGGTGATTTCCATGAAAGAGTGACAATACCGAATGAATTTCTACATAATTTCGGGGGCAAAATACCAAAATCTATTAAGCTGGAAACACGCAGCGGCCTCACTTTTGATGTTCAGGTTACCAAGAATTCTGGCAGAGTAGTCCTTCAATCAGGTTGGGCATCATATGTCAGTGCCCATGATCTGAAAATTGGGGACTTCTTGGTATTCAAGTACAGTGGTGACTCTCAACTGAAGACTCTAATCTTTGATTCGAGTGGTTGCGAGAAAGTATGTGAAAAACCTGTTGACATAAACGGAAGCAAAGGGATATCTCAAGGCAGGGGACAGTGA
More
|
|||||||
| Protein seq | MSKSGGRCSKEGDDAYFDWNRTNGEDKHFFKVMLGDFHERVTIPNEFLHNFGGKIPKSIKLETRSGLTFDVQVTKNSGRVVLQSGWASYVSAHDLKIGDFLVFKYSGDSQLKTLIFDSSGCEKVCEKPVDINGSKGISQGRGQ |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0621650 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g42410 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0621900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026670 | SBH | 0.0 | 0.0 | 0.132890 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0026400 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0026480 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0026500 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0026300 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0416800 | RBH | 0 | 0 | 0.0864205 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0026080 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0419800 | SBH | 0.2117125 | 0.186491 | 2.972017 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0026340 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0026360 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0026440 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0026210 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0026130 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G026140 | SBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0026090 | SBH | 0.0 | 0.0 | 0.000000 |
