Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0619700 | OGI:03067850 | 3/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:23496337-23497397 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTAGACACCAAACATCACGACAGCTCTCGCGTCGCTCTCCCCAGGGGCGGCTCGGGAGGCGACGACCCGGCCGCCCCTCTCCCCCACCCCTACCCCCTTCTCCGATCCGCCTCGCCGTCGCCCGAGCGGCCGCCGGCGAAGCCGCGCAGCCACAAGGACGGCGGCGGTGGGGTGCTCCTCGTCTCCTCGCGCTCGGGCGGCCTGGGGAGCCGCCCGGAGTGGCGACGGCGGTGTCCGCCAGATCCGCGCCGTTTCGGCCGGATCTGGCGGGATGGGCTGGCGGCGGGGACGGGCGACGGTGGCGGTCGAGGTGAGTTGCGCCGGGTGGTGTTGTGGGTGATGGCGGCGGGGATGGCGACGGCGTTGGGGTGGCGATGGTGGAGGCCGCGGATTCGGCGGTGGCGCACCCGGATCCGGCGACAACGCGGCGGCCAGCGCTGGCCAGAGCACGCAGGCACCCCGCGGCTGCCACTGGCGTCCTCCGGCGCCCCTCTAGACATCGGCCGGCGTTGGTGGAGAGGAAGACGGCCGGATCTGGCTCCTTGCCCAGATCCGGCGCGTCCTCGGGTGGGAACGGGTTGGTTGGAGTCCGGTCGTTGTGCAGGTGGTGAATATCGAAGGTATCCTCGGTGTGTAGGTGACATTTAGTGGCTCCCGTCGTGGATGCTATGGTTGATGGGTGCTCCAAGGCGAAAGTCTTGCTCCGCTCTCGGTGCTAGCAACGGCGACGCCCTTGGGCACCGTTCACCTTCTTGAAGGCGTTGCTACTGGAGCCCTCGTTCAACTCCACTTCAAGAGTTTTCTCTGGTGAAAACCTAAATTTGTTAGGATCGGACGATGTAGCCGTTCTGTCGGCGTAACCTTCTTGAAGGCTTCGTTTTAGGAGTTTATCTCTTGTTAGACGGCTGTACTTAGGTTCAGTTTGTCAATGTCGGGGTTTTTGCCGGTTTTCCTTTAATTAACCGTGCTGTTGTAAGGTTTTTGGGTCCGGTTTCCCTTGTAAACTGGATCAACTTTCTTCTTCTATAGTGAATTGCAGGAGCTCCCTGCCTGTCCCCTCG
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| CDS seq | GTAGACACCAAACATCACGACAGCTCTCGCGTCGCTCTCCCCAGGGGCGGCTCGGGAGGCGACGACCCGGCCGCCCCTCTCCCCCACCCCTACCCCCTTCTCCGATCCGCCTCGCCGTCGCCCGAGCGGCCGCCGGCGAAGCCGCGCAGCCACAAGGACGGCGGCGGTGGGGTGCTCCTCGTCTCCTCGCGCTCGGGCGGCCTGGGGAGCCGCCCGGAGTGGCGACGGCGGTGTCCGCCAGATCCGCGCCGTTTCGGCCGGATCTGGCGGGATGGGCTGGCGGCGGGGACGGGCGACGGTGGCGGTCGAGGTGAGTTGCGCCGGGTGGTGTTGTGGGTGATGGCGGCGGGGATGGCGACGGCGTTGGGGTGGCGATGGTGGAGGCCGCGGATTCGGCGGTGGCGCACCCGGATCCGGCGACAACGCGGCGGCCAGCGCTGGCCAGAGCACGCAGGCACCCCGCGGCTGCCACTGGCGTCCTCCGGCGCCCCTCTAGACATCGGCCGGCGTTGGTGGAGAGGAAGACGGCCGGATCTGGCTCCTTGCCCAGATCCGGCGCGTCCTCGGGTGGGAACGGGTTGGTTGGAGTCCGGTCGTTGTGCAGGTGGTGAATATCGAAGGTATCCTCGGTGTGTAGGTGACATTTAG
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| Protein seq | VDTKHHDSSRVALPRGGSGGDDPAAPLPHPYPLLRSASPSPERPPAKPRSHKDGGGGVLLVSSRSGGLGSRPEWRRRCPPDPRRFGRIWRDGLAAGTGDGGGRGELRRVVLWVMAAGMATALGWRWWRPRIRRWRTRIRRQRGGQRWPEHAGTPRLPLASSGAPLDIGRRWWRGRRPDLAPCPDPARPRVGTGWLESGRCAGGEYRRYPRCVGDI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0619700 | OsNip_03t0619700-01 | Chr03 | 23496337 | 23497397 | + | RAP2018-11-26 | ||
| CDS seq | GTAGACACCAAACATCACGACAGCTCTCGCGTCGCTCTCCCCAGGGGCGGCTCGGGAGGCGACGACCCGGCCGCCCCTCTCCCCCACCCCTACCCCCTTCTCCGATCCGCCTCGCCGTCGCCCGAGCGGCCGCCGGCGAAGCCGCGCAGCCACAAGGACGGCGGCGGTGGGGTGCTCCTCGTCTCCTCGCGCTCGGGCGGCCTGGGGAGCCGCCCGGAGTGGCGACGGCGGTGTCCGCCAGATCCGCGCCGTTTCGGCCGGATCTGGCGGGATGGGCTGGCGGCGGGGACGGGCGACGGTGGCGGTCGAGGTGAGTTGCGCCGGGTGGTGTTGTGGGTGATGGCGGCGGGGATGGCGACGGCGTTGGGGTGGCGATGGTGGAGGCCGCGGATTCGGCGGTGGCGCACCCGGATCCGGCGACAACGCGGCGGCCAGCGCTGGCCAGAGCACGCAGGCACCCCGCGGCTGCCACTGGCGTCCTCCGGCGCCCCTCTAGACATCGGCCGGCGTTGGTGGAGAGGAAGACGGCCGGATCTGGCTCCTTGCCCAGATCCGGCGCGTCCTCGGGTGGGAACGGGTTGGTTGGAGTCCGGTCGTTGTGCAGGTGGTGAATATCGAAGGTATCCTCGGTGTGTAGGTGACATTTAG
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| Protein seq | VDTKHHDSSRVALPRGGSGGDDPAAPLPHPYPLLRSASPSPERPPAKPRSHKDGGGGVLLVSSRSGGLGSRPEWRRRCPPDPRRFGRIWRDGLAAGTGDGGGRGELRRVVLWVMAAGMATALGWRWWRPRIRRWRTRIRRQRGGQRWPEHAGTPRLPLASSGAPLDIGRRWWRGRRPDLAPCPDPARPRVGTGWLESGRCAGGEYRRYPRCVGDI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.005715 | 0.121897 | 2.167698 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g42235 | RBH | 0.004607 | 0.083015 | 0.554351 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0619700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0026350 | RBH | 0.0 | 0.0 | 0.573906 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0026410 | SBH | 0.0 | 0.0 | 0.356735 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0026440 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0414100 | RBH | 0.0125775 | 0.020782 | 0.0672025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0027151 | RBH | 0.0 | 0.527034 | 0.228139 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0418700 | SBH | 0.07452 | 0.174806 | 0.767733 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0026020 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G026090 | SBH | 0.0 | 0.0 | 0.187105 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0026040 | SBH | 0.0 | 0.0 | 0.408917 |
