Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0596600 | OGI:03063470 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:22203686-22207221 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGTTGTGAAATGGGGTCTCTCAGCCCCGACACCCACCCATTCGCCGGCGTGCGACGGCGGCCACCAGATCCCCTGTTGCTCGTCTACCACTCTCCTCCCCCATCCTTGAGCGCTTCTCCTCTAGCTCTTCCCCACCTCCCCAATCCCTGCCCCAGTTGAGCGTTCCTTTTCCCTCGTTGGAAGATGGTGAGATCTTTGTTCCAGAGAGTTTAGATCTTGCTGCTCTGTCCCCGAAGAGAGCCGTCACCCTGCGTGACATTGCTGCCGTCTCCTTGGATAGGGTTCCTCCTAGCCCTTCTATGGCTGAGCGAGGAAAATCTGCTGCCCAATCACGCTTGGTTTTTTCAAATTTCCCTGAGCAGATGGCGCCAAAAGAGGCCAGATCTACAGCACTGAATCGAGATCCTCCCAGCAGCCCTGCTTTGCTAGTCCTCTCGAGTAAAGATTGTCCTCTTTACTCTGCCGTACTGAAGAACGACGCACAACCACCCGCGGCTCAACTCGTCCAGTTGCATCCGCCATCTCCGAGTAAGATTTTGCAATCTATTGCCCCTTCTTTCGATGGACCAAAATGTGACAGTCAACTACTTCCTGCTAGTCAACGTAAGCTGCAGGGGTGCCTTAGGCCCTGTTTAGATGGGACTAAAACTTTTAAGTCCCTATCACATCGGATGTTTGAAAATTAATTATAAATATTAAACGTAGACTATTAATAAAACCCATCAATAATCTTGGACTAATTCGCGAGATGAATGTATTGAGCCTAATTAATACATGATTAGCCTATGTGATGCTACAGTAAACATTCTCTAATTATGGATTAATTAGGCTTAAAAAAATTGTCTCGCGAATTAGCTTTCATTTATATAATTAGTTTTGTAAATAGTCTATATTTAATACTCTAAATTAGTGTTTAAATACAGGGACTAAAGTTAAGTCTCTGGATCCAAACACCACCTTAATCCGCCGCTCCTTGGCCAAGTTCCAAGACAGCAGAGGCAGATCCGGGGGAAAGGGAGCAATCAAGCTTTGCAGCATCGCCTACACTTCCCAGATCATACAGAGCAGCTAGAAGTTAAGGCATGGCAGGTTGTCAAACCAAAGTACTAGTAGAGGAAATGTGATGTAACAAATCCTACCGTCTTCAAGCCCGCCAACAACTTGCAGGAATAGCATTCAAGGAAGTTGCGTTACCTTAATCACATAAGAGGTAAATGCTTCCGTTGTCTGAGTTCAAAGCACAAGGTGCAGGATTGCAGAGAGCCTCTCCGTTGCTGGTTTTGTTTTGGTTTTGGCCACCAATCCACAACCTGCAAGTCGAGGCTCTATAAATCCCAGAAACAGCAAGCTGATGCACCCAACTCGCTTGACTTCCCACCCCTCCCAGCCAGCAGAAATAAACCCCCTGAAGCTCCCTTGGTTCCCAACATCTCTACCCCGCCCGACATGGCTGGCGTCCCTAGTGACCTGGTCTCAAGGCCAGAATTGAGCTACTGCATGGTGGCTGGTACTGTCGAAGTCGAGAGGCTCCATGTGCTTTACACGGTGCGCTCGGTGGTGGCCTGGACAGGTGAAGGGCAACATGTTGATCTCAACACCATTGCAGATGATGTCCACTCGGCTTACCGCATTCATCGCAACGACATCCAAGTCACCAAGTACCATCTGGAAAATTTCTTCCTCACGTTCACCATCCATGGTGATAGGGAGGCAGTCCTGCAGGAGCCAAGGTTGGTGACCAGAAGTGGACGGGAGTACTTCTTCCGGCCATGGGATGAGAAGAAGAATGCAGAAGCAGCGGATATCATTGAAGGTGTCCCAATGCACGCACGAACAGAGGATTCAGTGGCCAAGCTCATTGGTCCTTGGTGCTCGGTGCACTACATTGAAGAAGACACGCGTCGCCGCAACTACAATCGCACCTTTGATGTCTGGGTGTGGACGTCGGACCCAAGCTCCATCCCGAAGGTTTTGCGTCTCACTGTCACTAGACCAGATGAAGAAGGTCACCCGATGAACACTCCTTTTCCTGATCTTGAACCAGAGCAGCCAGCACCAAGGGAGCCGAAGAAGGGTCTTACTTATCCGGTCATCATCCACGTCGACTAGGTCCAAGACCAGGCTGCGCGGCATTACAGGGGCTACCAATGGCGATACGGGGAGGTCGACAATGCAGCAAGGGCACGGATGGTCTCCAGGCCGCTTGAGCCCTGCAGGGCTCTTACAGCGCCTGAGAGACGTTCGGATGATGAAGATGACCACGGCGATGTCTGCTCAAGAAGGAGGCATAGAAGCAGATCTCTCTGGGACCAGCTTGGTGGTCGCTCCTCCAGTAGGAGCAGGGAGCCGGAGTGCCAAGGGAGCAGAAGGTACAATGAGGAAAACAGAGGAAGACAGAGGATGCGTGAAGAGGATATCAACATAAGTCACAGCCGGAACCTCTCTCGTTCAGTGGAGCCTGGAGAGACGAGGATTAGAAGACAATCTGCGTGACAGCTGATCAGCGAGGCTCTCCCTCAGCGCCTGCTATTCAAGCTCCAACAAAGGTCACCTCTCCTTGCAAGCCACATAGATGCAATAGAAGCGAGAGTCCTGACGCAGGCTACACGCCTGACCTCTCCATCACTCCAGTTGTTTCTTCCTCACCTGATTGGGTTCCATTCATGCATGTCTCGGGTGCTGTTCTCGATCTGCTGGAGAAACACCTGGACCCAATGGTTCATGAAGCTGAGATGGCTCACTCCATGTACTCCCCTGACACTACTATCCCACGCCCTGTTTCCCCTGTCTTTATCCTTTCAGCTGCAGGGCAAGGCTCTCAGGCGACAACTAGAGGAAAAGGGGAGCAGACTGCTGATGTTTTCTTTGCTGAACTCTCGACGCCGGTGCTGCAGCCTCTGTTGCCGGTGCCTGGACACAAACAGCACCGCCCTTGTCGCAACAAGGTGACAATCTCTGCACATCGTCACAGCGCACGCCTAGCTACCAAAGCTAGATGAAACACAAAACTAGAAACAATTGCACAGGAGATTCTTGCAAATAAGTTTGGTGTTCTTGATGATAACAAACGTCTTGACACCCAAATTAAAAATCTTTACTTGCAGCAGTAGAAGAAGCCTCTTTCTCCTGCAGCTGTGAAGACCATCGCAGCCCTGGTCGAGAAAGGTGGCTGCAAATCAGTCCGCCTGCGTGGAGGAAGGAAGCTGGCGGCTGTCTCGCCGGCGTGAAGAACCTCCCACAGTGAAACAGTTGTGCTTCGCTGACCATGCAGTGGAGAAGATATTCCATCCCAATGGAAGCTCTCAGCACGCTGTCTCTTTGTGTTTCTACCAAATGTTTTTGGCTATGTTTCGGAGACAGTCGTCTATGCCTTCCTCCACCAATTTTTCTCCTAAAAACTGCATGTATCTCCAGTAGATGTGTCTTTTGCTTATGTCTCAACAATCATGTTTCATCCTGTATTGGAACATAAGAGGGCTCAACAATCCAGCAAAGAAAGACAGTGTTAAGTTGCTAATTGATGATATGAAAGGTTC
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| CDS seq | CATTCAAGGAAGTTGCGTTACCTTAATCACATAAGAGGTAAATGCTTCCGTTGTCTGAGTTCAAAGCACAAGGTGCAGGATTGCAGAGAGCCTCTCCGTTGCTGGTTTTGTTTTGGTTTTGGCCACCAATCCACAACCTGCAAGTCGAGGCTCTATAAATCCCAGAAACAGCAAGCTGATGCACCCAACTCGCTTGACTTCCCACCCCTCCCAGCCAGCAGAAATAAACCCCCTGAAGCTCCCTTGGTTCCCAACATCTCTACCCCGCCCGACATGGCTGGCGTCCCTAGTGACCTGGTCTCAAGGCCAGAATTGAGCTACTGCATGGTGGCTGGTACTGTCGAAGTCGAGAGGCTCCATGTGCTTTACACGGTGCGCTCGGTGGTGGCCTGGACAGGTGAAGGGCAACATGTTGATCTCAACACCATTGCAGATGATGTCCACTCGGCTTACCGCATTCATCGCAACGACATCCAAGTCACCAAGTACCATCTGGAAAATTTCTTCCTCACGTTCACCATCCATGGTGATAGGGAGGCAGTCCTGCAGGAGCCAAGGTTGGTGACCAGAAGTGGACGGGAGTACTTCTTCCGGCCATGGGATGAGAAGAAGAATGCAGAAGCAGCGGATATCATTGAAGGTGTCCCAATGCACGCACGAACAGAGGATTCAGTGGCCAAGCTCATTGGTCCTTGGTGCTCGGTGCACTACATTGAAGAAGACACGCGTCGCCGCAACTACAATCGCACCTTTGATGTCTGGGTGTGGACGTCGGACCCAAGCTCCATCCCGAAGGTTTTGCGTCTCACTGTCACTAGACCAGATGAAGAAGGTCACCCGATGAACACTCCTTTTCCTGATCTTGAACCAGAGCAGCCAGCACCAAGGGAGCCGAAGAAGGGTCTTACTTATCCGGTCATCATCCACGTCGACTAG
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| Protein seq | HSRKLRYLNHIRGKCFRCLSSKHKVQDCREPLRCWFCFGFGHQSTTCKSRLYKSQKQQADAPNSLDFPPLPASRNKPPEAPLVPNISTPPDMAGVPSDLVSRPELSYCMVAGTVEVERLHVLYTVRSVVAWTGEGQHVDLNTIADDVHSAYRIHRNDIQVTKYHLENFFLTFTIHGDREAVLQEPRLVTRSGREYFFRPWDEKKNAEAADIIEGVPMHARTEDSVAKLIGPWCSVHYIEEDTRRRNYNRTFDVWVWTSDPSSIPKVLRLTVTRPDEEGHPMNTPFPDLEPEQPAPREPKKGLTYPVIIHVD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0596600 | OsNip_03t0596600-01 | Chr03 | 22204030 | 22207200 | + | RAP2018-11-26 | ||
| CDS seq | CATTCAAGGAAGTTGCGTTACCTTAATCACATAAGAGGTAAATGCTTCCGTTGTCTGAGTTCAAAGCACAAGGTGCAGGATTGCAGAGAGCCTCTCCGTTGCTGGTTTTGTTTTGGTTTTGGCCACCAATCCACAACCTGCAAGTCGAGGCTCTATAAATCCCAGAAACAGCAAGCTGATGCACCCAACTCGCTTGACTTCCCACCCCTCCCAGCCAGCAGAAATAAACCCCCTGAAGCTCCCTTGGTTCCCAACATCTCTACCCCGCCCGACATGGCTGGCGTCCCTAGTGACCTGGTCTCAAGGCCAGAATTGAGCTACTGCATGGTGGCTGGTACTGTCGAAGTCGAGAGGCTCCATGTGCTTTACACGGTGCGCTCGGTGGTGGCCTGGACAGGTGAAGGGCAACATGTTGATCTCAACACCATTGCAGATGATGTCCACTCGGCTTACCGCATTCATCGCAACGACATCCAAGTCACCAAGTACCATCTGGAAAATTTCTTCCTCACGTTCACCATCCATGGTGATAGGGAGGCAGTCCTGCAGGAGCCAAGGTTGGTGACCAGAAGTGGACGGGAGTACTTCTTCCGGCCATGGGATGAGAAGAAGAATGCAGAAGCAGCGGATATCATTGAAGGTGTCCCAATGCACGCACGAACAGAGGATTCAGTGGCCAAGCTCATTGGTCCTTGGTGCTCGGTGCACTACATTGAAGAAGACACGCGTCGCCGCAACTACAATCGCACCTTTGATGTCTGGGTGTGGACGTCGGACCCAAGCTCCATCCCGAAGGTTTTGCGTCTCACTGTCACTAGACCAGATGAAGAAGGTCACCCGATGAACACTCCTTTTCCTGATCTTGAACCAGAGCAGCCAGCACCAAGGGAGCCGAAGAAGGGTCTTACTTATCCGGTCATCATCCACGTCGACTAG
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| Protein seq | HSRKLRYLNHIRGKCFRCLSSKHKVQDCREPLRCWFCFGFGHQSTTCKSRLYKSQKQQADAPNSLDFPPLPASRNKPPEAPLVPNISTPPDMAGVPSDLVSRPELSYCMVAGTVEVERLHVLYTVRSVVAWTGEGQHVDLNTIADDVHSAYRIHRNDIQVTKYHLENFFLTFTIHGDREAVLQEPRLVTRSGREYFFRPWDEKKNAEAADIIEGVPMHARTEDSVAKLIGPWCSVHYIEEDTRRRNYNRTFDVWVWTSDPSSIPKVLRLTVTRPDEEGHPMNTPFPDLEPEQPAPREPKKGLTYPVIIHVD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0596600 | OsNip_03t0596600-02 | Chr03 | 22203686 | 22207221 | + | IsoSeq | ||
| CDS seq | ATGGCTGAGCGAGGAAAATCTGCTGCCCAATCACGCTTGGTTTTTTCAAATTTCCCTGAGCAGATGGCGCCAAAAGAGGCCAGATCTACAGCACTGAATCGAGATCCTCCCAGCAGCCCTGCTTTGCTAGTCCTCTCGAGTAAAGATTGTCCTCTTTACTCTGCCGTACTGAAGAACGACGCACAACCACCCGCGGCTCAACTCGTCCAGTTGCATCCGCCATCTCCGAGGACTAAAGTTAAGTCTCTGGATCCAAACACCACCTTAATCCGCCGCTCCTTGGCCAAGTTCCAAGACAGCAGAGGCAGATCCGGGGGAAAGGGAGCAATCAAGCTTTGCAGCATCGCCTACACTTCCCAGATCATACAGAGC
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| Protein seq | MAERGKSAAQSRLVFSNFPEQMAPKEARSTALNRDPPSSPALLVLSSKDCPLYSAVLKNDAQPPAAQLVQLHPPSPRTKVKSLDPNTTLIRRSLAKFQDSRGRSGGKGAIKLCSIAYTSQIIQS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 22206630 | 22206793 | + | OsNip_03t0596600-02 | OsNip_03t0596600-01,OsNip_03t0596600-02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.562848 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g39960 | RBH | 0.0 | 0.0 | 0.146374 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0596600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0025380 | RBH | 0.0 | 3.988049 | 1.967293 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0025160 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0025200 | RBH | 0.0 | 0.0 | 0.985412 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0025240 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0024940 | RBH | 0.000000 | 13.538104 | 3.625634 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0387300 | RBH | 0.007211 | 0.0619585 | 0.128452 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0024740 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0387300 | RBH | 0.632223 | 1.642037 | 9.142255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0025020 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0025050 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0025140 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0024890 | RBH | 0.0 | 0.0 | 0.347224 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0024790 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G024880 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0024850 | RBH | 0.0 | 0.0 | 0.0 |
