Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0425600 | OGI:03047670 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:17774284-17776497 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGGGAAGATGGTGAAGATCTGCTGCCTCGGAGCCGGCTATGTCGGCGGCCCGACCATGGCGGTCATCGCCCTCAAGTGCCCCGACGTCGAGGTGGTCGTCGTCGACATCTCCGCCGCCCGCATCGACGCCTGGAACAGCGACGCGCTCCCGATCTACGAGCCGGGCCTCGACGACGTCGTGCGCCGCTGCCGCGGGAGGAACCTCTTCTTCAGCAGCGACGTCGAGAGGCACGTCGGCGAGGCCGACATCGTCTTCGTCTCCGTGAACACCCCCACCAAGGCCCGCGGCCTCGGCGCCGGCAAGGCCGCCGACCTCACCTACTGGGAGAGCGCGGCGCGGATGATCGCCGCCGTGGCGACGTCCGACAAGGTCGTCGTCGAGAAGTCCACCGTGCCGGTCAAGACCGCGGAGGCCATCGAGAAGATCCTCGACCACAACGGCCGCGACGGCGTCGGCTTCCAGATCCTCTCCAACCCGGAGTTCCTCGCCGAGGGCACCGCCATCCGCGACCTGCTCGCCCCCGACCGCGTCCTCATCGGCGGCCGCGAGACCGCCGCGGGGCGCGCCGCCGTCCAGGCGCTCAAGGACGTGTACACCCGATGGGTCCCCGAGGAGAGGATCCTCACCACCAACCTCTGGTCCGCCGAGCTGTCCAAGCTCGCCGCCAACGCGTTCCTGGCCCAGAGGATCTCGTCCGTCAACGCCATGTCCGCGCTCTGCGAGGCCACCGGCGCCGACGTCGCCGAGGTCGCCTACGCCGTGGGCAAGGACTCCAGGATCGGCGCCAAGTTTCTCAACGCCAGCGTGGGATTCGGTGGCTCCTGCTTCCAGAAAGACATCCTCAACCTGGTGTACATCTGCGAGTGCAATGGCCTCCCCGAGGTGGCCAACTACTGGAAGCAGGTGATCAAAGGTTTTAAATCTCCGGCTATAGCAACCACTATGTCCAAAGATATATACTCACTCACTCCGTTTCAGGTTATAAGACGTTTTACTTCGGTCAAAATCAAACTGTTTCAAGTTTGTCTAAATTTATAGACAAATATAGTAATATTTATAATACTAAATTAGTTTCATCAAATTAATAATTGAATATATTTTCATAATAAATTTGTTTTGAATTAAAAATGTTTCTACTTTTTTTATAAACTTGGTCAAACTTAAAGCAGTTTGACTTATAACAAAATTAAAACGTCTTATAGCTTGAAACGAAGGAAGTAGCAAATATTTGCTCTCATGTACTTCCTCCGTCTTAAAATATAAGTATTTTTAGCTTTCATAGCTAAAAGTTGCTATATTTTAGGACGAAGGTTACTAGCCGTTGTAGTTTTATTTAGCCTGTTAATTATTAACTGTTTGAAAATACCGACCGCTAAATATATTAGCCCGCTATTTAAAACGCTGCATGCAGGTTATCAAGATCAACGACTACCAGAAGAGCCGGTTCGTGAACCGCGTGGTGTCGTCCATGTTCAACACCGTGGCCGGCAAGAAGATCGCCGTGCTGGGCTTCGCCTTCAAGAAGGACACCGGCGACACCAGGGAGACGCCCGCCATCGACGTCTGCAAGGGGCTGATCGGCGACAAGGCCAAGGTGAGCATCTACGACCCCCAGGTGACGGAGGACCAGGTCCAGCGCGACCTCGCCATGAGCAAGTTCGATTGGGATCACCCGGTCCATCTCCAGCCGATGAGCCCCACGGCCATCAAGCAGGTGTCCGTCGCCTGGGACGCCTACGAGGCGGCCAGGGCCGCCCACGGCGTCTGCATCCTCACTGAGTGGGACGAGTTCAGGAGCCTCGACTACGCGAGGATCTACGGGGGAATGCAGAAGCCGGCGTTCGTGTTCGACGGGCGCAACGTGGTTGACGCTGAGAAGCTGAGGGAGATTGGATTCATCGTCTACTCCATTGGCAAGCCTCTCGATGCCTGGCTCAAGGACATGCCTGCTGTTGCCTGAATAATTAAACCTGTTCGTCGTCGGAGGAGGAGATGCACCTTGTTAGAATCTATGAGCAACTATTATATTGATTGATAGGGTTCAGCGTGTTAAACTTTATAGTTGCCATTTTATCTTGTGCCAAAAAAACAAAACCGAATAATTCAGGATGTCAATCTTTGTATCCATTTTACAATCTTATAAGAATGACATGGCTGTATACTGATTGTGTCCTCATTCCCTTGTGGCGAGTTTTTGTTACTTTGTAGATTAT
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| CDS seq | ATGGTGAAGATCTGCTGCCTCGGAGCCGGCTATGTCGGCGGCCCGACCATGGCGGTCATCGCCCTCAAGTGCCCCGACGTCGAGGTGGTCGTCGTCGACATCTCCGCCGCCCGCATCGACGCCTGGAACAGCGACGCGCTCCCGATCTACGAGCCGGGCCTCGACGACGTCGTGCGCCGCTGCCGCGGGAGGAACCTCTTCTTCAGCAGCGACGTCGAGAGGCACGTCGGCGAGGCCGACATCGTCTTCGTCTCCGTGAACACCCCCACCAAGGCCCGCGGCCTCGGCGCCGGCAAGGCCGCCGACCTCACCTACTGGGAGAGCGCGGCGCGGATGATCGCCGCCGTGGCGACGTCCGACAAGGTCGTCGTCGAGAAGTCCACCGTGCCGGTCAAGACCGCGGAGGCCATCGAGAAGATCCTCGACCACAACGGCCGCGACGGCGTCGGCTTCCAGATCCTCTCCAACCCGGAGTTCCTCGCCGAGGGCACCGCCATCCGCGACCTGCTCGCCCCCGACCGCGTCCTCATCGGCGGCCGCGAGACCGCCGCGGGGCGCGCCGCCGTCCAGGCGCTCAAGGACGTGTACACCCGATGGGTCCCCGAGGAGAGGATCCTCACCACCAACCTCTGGTCCGCCGAGCTGTCCAAGCTCGCCGCCAACGCGTTCCTGGCCCAGAGGATCTCGTCCGTCAACGCCATGTCCGCGCTCTGCGAGGCCACCGGCGCCGACGTCGCCGAGGTCGCCTACGCCGTGGGCAAGGACTCCAGGATCGGCGCCAAGTTTCTCAACGCCAGCGTGGGATTCGGTGGCTCCTGCTTCCAGAAAGACATCCTCAACCTGGTGTACATCTGCGAGTGCAATGGCCTCCCCGAGGTGGCCAACTACTGGAAGCAGGTTATCAAGATCAACGACTACCAGAAGAGCCGGTTCGTGAACCGCGTGGTGTCGTCCATGTTCAACACCGTGGCCGGCAAGAAGATCGCCGTGCTGGGCTTCGCCTTCAAGAAGGACACCGGCGACACCAGGGAGACGCCCGCCATCGACGTCTGCAAGGGGCTGATCGGCGACAAGGCCAAGGTGAGCATCTACGACCCCCAGGTGACGGAGGACCAGGTCCAGCGCGACCTCGCCATGAGCAAGTTCGATTGGGATCACCCGGTCCATCTCCAGCCGATGAGCCCCACGGCCATCAAGCAGGTGTCCGTCGCCTGGGACGCCTACGAGGCGGCCAGGGCCGCCCACGGCGTCTGCATCCTCACTGAGTGGGACGAGTTCAGGAGCCTCGACTACGCGAGGATCTACGGGGGAATGCAGAAGCCGGCGTTCGTGTTCGACGGGCGCAACGTGGTTGACGCTGAGAAGCTGAGGGAGATTGGATTCATCGTCTACTCCATTGGCAAGCCTCTCGATGCCTGGCTCAAGGACATGCCTGCTGTTGCCTGA
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| Protein seq | MVKICCLGAGYVGGPTMAVIALKCPDVEVVVVDISAARIDAWNSDALPIYEPGLDDVVRRCRGRNLFFSSDVERHVGEADIVFVSVNTPTKARGLGAGKAADLTYWESAARMIAAVATSDKVVVEKSTVPVKTAEAIEKILDHNGRDGVGFQILSNPEFLAEGTAIRDLLAPDRVLIGGRETAAGRAAVQALKDVYTRWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVAEVAYAVGKDSRIGAKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVVSSMFNTVAGKKIAVLGFAFKKDTGDTRETPAIDVCKGLIGDKAKVSIYDPQVTEDQVQRDLAMSKFDWDHPVHLQPMSPTAIKQVSVAWDAYEAARAAHGVCILTEWDEFRSLDYARIYGGMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA |
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| Function | UDP-glucose 6-dehydrogenase 1 [UniProtKB/Swiss-Prot:Q75GS4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0425600 | OsNip_03t0425600-00 | Chr03 | 17774284 | 17776497 | + | RAP2018-11-26 | ||
| CDS seq | ATGGTGAAGATCTGCTGCCTCGGAGCCGGCTATGTCGGCGGCCCGACCATGGCGGTCATCGCCCTCAAGTGCCCCGACGTCGAGGTGGTCGTCGTCGACATCTCCGCCGCCCGCATCGACGCCTGGAACAGCGACGCGCTCCCGATCTACGAGCCGGGCCTCGACGACGTCGTGCGCCGCTGCCGCGGGAGGAACCTCTTCTTCAGCAGCGACGTCGAGAGGCACGTCGGCGAGGCCGACATCGTCTTCGTCTCCGTGAACACCCCCACCAAGGCCCGCGGCCTCGGCGCCGGCAAGGCCGCCGACCTCACCTACTGGGAGAGCGCGGCGCGGATGATCGCCGCCGTGGCGACGTCCGACAAGGTCGTCGTCGAGAAGTCCACCGTGCCGGTCAAGACCGCGGAGGCCATCGAGAAGATCCTCGACCACAACGGCCGCGACGGCGTCGGCTTCCAGATCCTCTCCAACCCGGAGTTCCTCGCCGAGGGCACCGCCATCCGCGACCTGCTCGCCCCCGACCGCGTCCTCATCGGCGGCCGCGAGACCGCCGCGGGGCGCGCCGCCGTCCAGGCGCTCAAGGACGTGTACACCCGATGGGTCCCCGAGGAGAGGATCCTCACCACCAACCTCTGGTCCGCCGAGCTGTCCAAGCTCGCCGCCAACGCGTTCCTGGCCCAGAGGATCTCGTCCGTCAACGCCATGTCCGCGCTCTGCGAGGCCACCGGCGCCGACGTCGCCGAGGTCGCCTACGCCGTGGGCAAGGACTCCAGGATCGGCGCCAAGTTTCTCAACGCCAGCGTGGGATTCGGTGGCTCCTGCTTCCAGAAAGACATCCTCAACCTGGTGTACATCTGCGAGTGCAATGGCCTCCCCGAGGTGGCCAACTACTGGAAGCAGGTTATCAAGATCAACGACTACCAGAAGAGCCGGTTCGTGAACCGCGTGGTGTCGTCCATGTTCAACACCGTGGCCGGCAAGAAGATCGCCGTGCTGGGCTTCGCCTTCAAGAAGGACACCGGCGACACCAGGGAGACGCCCGCCATCGACGTCTGCAAGGGGCTGATCGGCGACAAGGCCAAGGTGAGCATCTACGACCCCCAGGTGACGGAGGACCAGGTCCAGCGCGACCTCGCCATGAGCAAGTTCGATTGGGATCACCCGGTCCATCTCCAGCCGATGAGCCCCACGGCCATCAAGCAGGTGTCCGTCGCCTGGGACGCCTACGAGGCGGCCAGGGCCGCCCACGGCGTCTGCATCCTCACTGAGTGGGACGAGTTCAGGAGCCTCGACTACGCGAGGATCTACGGGGGAATGCAGAAGCCGGCGTTCGTGTTCGACGGGCGCAACGTGGTTGACGCTGAGAAGCTGAGGGAGATTGGATTCATCGTCTACTCCATTGGCAAGCCTCTCGATGCCTGGCTCAAGGACATGCCTGCTGTTGCCTGA
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| Protein seq | MVKICCLGAGYVGGPTMAVIALKCPDVEVVVVDISAARIDAWNSDALPIYEPGLDDVVRRCRGRNLFFSSDVERHVGEADIVFVSVNTPTKARGLGAGKAADLTYWESAARMIAAVATSDKVVVEKSTVPVKTAEAIEKILDHNGRDGVGFQILSNPEFLAEGTAIRDLLAPDRVLIGGRETAAGRAAVQALKDVYTRWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVAEVAYAVGKDSRIGAKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVVSSMFNTVAGKKIAVLGFAFKKDTGDTRETPAIDVCKGLIGDKAKVSIYDPQVTEDQVQRDLAMSKFDWDHPVHLQPMSPTAIKQVSVAWDAYEAARAAHGVCILTEWDEFRSLDYARIYGGMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.349775 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0757900 | SBH | 12.131588 | 7.615557 | 24.160583 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g31210 | RBH | 0.0 | 0.0 | 0.174992 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0425600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0022320 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0022180 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0022240 | RBH | 0.0 | 1.245516 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0022230 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0022040 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0293000 | RBH | 0.0081895 | 0.0072885 | 0.0102975 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0021780 | SBH | 0.0 | 0.0 | 0.164327 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0296300 | RBH | 0.014462 | 0 | 0.0449825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0022080 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0022070 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0022180 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0022020 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0021860 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G021850 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0021760 | RBH | 0.0 | 0.0 | 0.0 |
