Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0422900 | OGI:03047170 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:17605264-17608024 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATAGAAAAATGGAAAGTGTCGTTGTTACTGCTGCTGAGGGTGCTGTGAAAACACTGCTGGGTAAACTGGGCTCTTTTCTTTCGCAAGAGCCCCGACTTCTTGGTGGGGTCAGAGGTGAGTTGCAATACATCAAGGATGAACTTGAGAGCATGAACGCATTCCTCCAGAACCTTGCAGCCACAAGCAGCCACAGTGTCCAAGTGAAGATCTGGATGAAGCAAGTCAGAGAGATGGCTTATGACGCTGAGGACTGCATTGATGAGTTCCAACACCACTTTGGTGGCTATTGTGGTAATGGTATTGTAGGGTTTATATATAGGATGAAGCATCTTATGTACACTCTGAAGGTCCGCCATCGAATTGTCATGCAAGTGCAAGAGCTTAAGGTTCGTGCTCGAGATGTTAGTGACAGGTATGCGAGATATAGCGGTGCTAATGCTATTGTTGATGCCTCTGACTCGAAGAATACCACCACTTCAATCTCAACCTGTTTGTCCCTTGACCCTAGGCAAGTTATTGGTTTTATACAGGATGATCTACTTGTGGGAATCAACAATCGGAGGGACAGGGTCCTAACATATCTAAGAGTGGACAGTGATCAAGAACTAAGGGTAATATCAATTTTTGGCTTTGGAGGATTGGGCAAGACTACCCTTGCCAAGGCAATATATGATAGTCCACAGGTAAAGAATGGTCAGTTCCATTGTCAAGCTTTTGTTACCGTATCCCAGAAAATTGATCTAAAGGCTCTATTGAGAGACATGCTTGGGCAGCTTATTCCACCTGCTTCTGATCAACATGTCAGCTCAGACATTGAGGATGAACATCTCAAAGCTATTGAAGTATGGGATGTGAAAAGACTTGGCGACAAACTACGTTCATTATTCTTGATGATATTTGGTCTGATTCGGCATGGGATACTTTTAAGTTTCTTTTGCCGAAGAATCATGTTGGAAGTGTAATAATTGTTACCACAAGAATCAGAAGTGTGGCGAATTATTGCTCCCATCTCCAGCATGATTACAGTTATGAAATTGAACCCCTGAATGAAATAGAATCCAAAGAATTATTCTTGCGGAGATTGTTTGGCCAGTTACATGAGTGCCCACAAAACATACAGAAAGTTTCAGAAAGCGTCTTGAAGAAATGCGGTGGTATGCCTCTAGCTATCAATAGTATAGCTGGGCTTTTGGCTTGTAGGCCTGTTAAGAGCTTAGAAGAAATGCAGAACTTACAAAACTCTCTTGGATCTGAGATGGATTCTTTCTCAACCATGGAGAAAATAAAGCAGATACTACTATTAAGTTACAATGATTTACCCTACCATTTGAAGACATGCTTCTTGTATTTTAGTATCTTCCCAGAGGACTACAAGATTAAAAGGAAAAATGTTGTCCGGCAATGGGTGGCAGAGGGATTTGTATCAGACAAGCGGGGACAATCTGCGGAGCAAGTTGCTGAGAGCTATTTTGCAGAGTTTATCAATAGGAGTATAGTCCAACCTTTAGATATAAGTGACAGCGGAAAGGTTAAGACTTGCAGGATCCATGATATAATGTTGGAGGTCATTGTAGAGATGTCTGTTGAACAAAATTTTATTTCACTTATGGGGGATCAACATACAATGATTTCCTATGACAAGGTTCGACGTCTTTCCTTACATGGCCATGGTGCATATAATCTATCAACTAGCTTGGAATTATCACATATCCGATCCCTAAGCTCCTTTGGGGATATGCCAAGAGCTTTGCGCTTTGACCGTGCAAGATTGCTCAGAGTGTTAGATCTAGAAAGCTGTGAATTTCTGAGGAATCGTCAACATCATCATATTTGTGCATTGTTCCATCTAAAGTACCTCAGTCTAAGAAGAGCTCACAACATAGATAGGCTCCCAAGAAAAATAAAGAAATTGCAGAGCTTGGAAACTCTAGATTTAAGGGGTAAAGGTATAGATAAGTTACCTGCTAGTTTCATTGAACTGGAGAATTTGGTCCATTTCCGTTCAGGTTCTACCTACTTGCCGCATGGCTTTGGGAGAATGAAAAGCATACTAACATTGGGATTGATAGAGATCTCAGATGACACATCTTGGAGGATACAAGAAATTGGCTGCTTGATGCAACTGGAGAAGCTCTGCATATGGTCACGCGATGGCATGAACAAGGAGAACTGGGAGTCCCTACTCACCGTCATTGAGAACTTAAGCAGGCGCCTCCTGTCACTCTCAATTGAAACGGACAGGAGAACTTGTTCTTTGCCACTTGATTTCTCATCCTCCCCACCTCTTCTCCTGCGAAGCCTCCTGTTATATGGAAGTTTGGAAGCATTGCCAAGTTGGATGGCATCGCTGGATAACCTTGTGAAATTAACTCTTGGTGGTACTAAATTAGAGGAGGATGATATACAGATTCTCCAGAAGCTCCCACGATTGTTTTCTCTTAGACTGTGGTTTGCATTTGCCGTAGAGAAGTTTGTTGTTGCGCCCTGAGGGTTTCCCAATCTTCAGTTACTTGCGATTCAAGGTTGGAATGGGCCTCTTCAGATGATTTTGGAGGAAGGAACTATGCAGAAGCTCCACAAGTTGGTGTTGGTGGCATCATTTCGTGATGCTACTCTAAAGAGCATAAAAGGGACTAAGTATCTGCGAAGTCTCCGGACAGTTGAAATAAGAGCTAAATCTACTCCATGCATGGAAGCTCTGCTGGATGAGCTGAGACTTGAAGCAAGCCATCTTCCCAACCATCCGACTGTAATTTTCAAG
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| CDS seq | ATGGAAAGTGTCGTTGTTACTGCTGCTGAGGGTGCTGTGAAAACACTGCTGGGTAAACTGGGCTCTTTTCTTTCGCAAGAGCCCCGACTTCTTGGTGGGGTCAGAGGTGAGTTGCAATACATCAAGGATGAACTTGAGAGCATGAACGCATTCCTCCAGAACCTTGCAGCCACAAGCAGCCACAGTGTCCAAGTGAAGATCTGGATGAAGCAAGTCAGAGAGATGGCTTATGACGCTGAGGACTGCATTGATGAGTTCCAACACCACTTTGGTGGCTATTGTGGTAATGGTATTGTAGGGTTTATATATAGGATGAAGCATCTTATGTACACTCTGAAGGTCCGCCATCGAATTGTCATGCAAGTGCAAGAGCTTAAGGTTCGTGCTCGAGATGTTAGTGACAGGTATGCGAGATATAGCGGTGCTAATGCTATTGTTGATGCCTCTGACTCGAAGAATACCACCACTTCAATCTCAACCTGTTTGTCCCTTGACCCTAGGCAAGTTATTGGTTTTATACAGGATGATCTACTTGTGGGAATCAACAATCGGAGGGACAGGGTCCTAACATATCTAAGAGTGGACAGTGATCAAGAACTAAGGGTAATATCAATTTTTGGCTTTGGAGGATTGGGCAAGACTACCCTTGCCAAGGCAATATATGATAGTCCACAGGTAAAGAATGGTCAGTTCCATTGTCAAGCTTTTGTTACCGTATCCCAGAAAATTGATCTAAAGGCTCTATTGAGAGACATGCTTGGGCAGCTTATTCCACCTGCTTCTGATCAACATGTCAGCTCAGACATTGAGGATGAACATCTCAAAGCTATTGAAGTATGGGATGTGAAAAGACTTGGCGACAAACTACGTTCATTATTCTTGATGATATTTGGTCTGATTCGGCATGGGATACTTTTAAGTTTCTTTTGCCGAAGAATCATGTTGGAAGTGTAA
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| Protein seq | MESVVVTAAEGAVKTLLGKLGSFLSQEPRLLGGVRGELQYIKDELESMNAFLQNLAATSSHSVQVKIWMKQVREMAYDAEDCIDEFQHHFGGYCGNGIVGFIYRMKHLMYTLKVRHRIVMQVQELKVRARDVSDRYARYSGANAIVDASDSKNTTTSISTCLSLDPRQVIGFIQDDLLVGINNRRDRVLTYLRVDSDQELRVISIFGFGGLGKTTLAKAIYDSPQVKNGQFHCQAFVTVSQKIDLKALLRDMLGQLIPPASDQHVSSDIEDEHLKAIEVWDVKRLGDKLRSLFLMIFGLIRHGILLSFFCRRIMLEV |
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| Function | Disease resistance protein PIK6-NP [UniProtKB/Swiss-Prot:Q2QZF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0422900 | OsNip_03t0422900-00 | Chr03 | 17605264 | 17608024 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAAAGTGTCGTTGTTACTGCTGCTGAGGGTGCTGTGAAAACACTGCTGGGTAAACTGGGCTCTTTTCTTTCGCAAGAGCCCCGACTTCTTGGTGGGGTCAGAGGTGAGTTGCAATACATCAAGGATGAACTTGAGAGCATGAACGCATTCCTCCAGAACCTTGCAGCCACAAGCAGCCACAGTGTCCAAGTGAAGATCTGGATGAAGCAAGTCAGAGAGATGGCTTATGACGCTGAGGACTGCATTGATGAGTTCCAACACCACTTTGGTGGCTATTGTGGTAATGGTATTGTAGGGTTTATATATAGGATGAAGCATCTTATGTACACTCTGAAGGTCCGCCATCGAATTGTCATGCAAGTGCAAGAGCTTAAGGTTCGTGCTCGAGATGTTAGTGACAGGTATGCGAGATATAGCGGTGCTAATGCTATTGTTGATGCCTCTGACTCGAAGAATACCACCACTTCAATCTCAACCTGTTTGTCCCTTGACCCTAGGCAAGTTATTGGTTTTATACAGGATGATCTACTTGTGGGAATCAACAATCGGAGGGACAGGGTCCTAACATATCTAAGAGTGGACAGTGATCAAGAACTAAGGGTAATATCAATTTTTGGCTTTGGAGGATTGGGCAAGACTACCCTTGCCAAGGCAATATATGATAGTCCACAGGTAAAGAATGGTCAGTTCCATTGTCAAGCTTTTGTTACCGTATCCCAGAAAATTGATCTAAAGGCTCTATTGAGAGACATGCTTGGGCAGCTTATTCCACCTGCTTCTGATCAACATGTCAGCTCAGACATTGAGGATGAACATCTCAAAGCTATTGAAGTATGGGATGTGAAAAGACTTGGCGACAAACTACGTTCATTATTCTTGATGATATTTGGTCTGATTCGGCATGGGATACTTTTAAGTTTCTTTTGCCGAAGAATCATGTTGGAAGTGTAA
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| Protein seq | MESVVVTAAEGAVKTLLGKLGSFLSQEPRLLGGVRGELQYIKDELESMNAFLQNLAATSSHSVQVKIWMKQVREMAYDAEDCIDEFQHHFGGYCGNGIVGFIYRMKHLMYTLKVRHRIVMQVQELKVRARDVSDRYARYSGANAIVDASDSKNTTTSISTCLSLDPRQVIGFIQDDLLVGINNRRDRVLTYLRVDSDQELRVISIFGFGGLGKTTLAKAIYDSPQVKNGQFHCQAFVTVSQKIDLKALLRDMLGQLIPPASDQHVSSDIEDEHLKAIEVWDVKRLGDKLRSLFLMIFGLIRHGILLSFFCRRIMLEV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.090683 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g30910 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0422900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0022150 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0022000 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0022070 | RBH | 0.0 | 0.0 | 0.501708 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0022050 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0021860 | RBH | 0.824959 | 2.534390 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0250100 | SBH | 2.6824365 | 0.106094 | 0.042998 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0021600 | RBH | 0.0 | 0.0 | 0.060721 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0021890 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0021890 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0021970 | RBH | 0.977972 | 1.774366 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0021840 | RBH | 0.184736 | 0.000000 | 0.098507 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0021690 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G021660 | RBH | 0.0 | 0.0 | 0.194541 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0021560 | RBH | 0.0 | 0.000000 | 0.0 |
