Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0410100 | OGI:03045280 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:16888652-16892606 | ||||||||
| Gene Symbol | ELS2, OsELS2 | ||||||||||
| DNA seq | GCCTCCCCCCCACTTCAAGTCTCCATTCCTCCATCGCCGCCTCGATCTACTCGCCGATGGCGCTCTCCCCTCCCGCGGCCGCGCGCTCTTAGCATCCGCCGCCGCCTCCGCCGCCGTCCACGCCTTCGATCCACTCCCATGTCGGAGCCGCCGGCCTCATCCTGCCTGCTTCAGTAGGCTAACCGACAGGGGGGAATTCCGGCCGGGAGCCAGGCTGGGCGCCCATGTCCCCCTCCGCCACCTCGCCGCCGAATCGCCCACACCGCAAGCGCCGCGCCGGTGCCGGTGGCGGTGGCGCTGACGACGGCTCGACCCGCCGCCGCGGCCGCAGCGCTGTCCTCCTCGGCCCCACCCACTTCCCCGCCGTTCGCTCCTTCGGCCTCCGCCTCGCCCTCGTCGTCGCCCCAGCCCCACGTCACCGCCGCAAGCAGCGCCCGCTCCACTACGCCTGCCGCCCCACCTCCCTTCCCTGTCGCCGCCGCCGTCGCCTCCGCAGTATCATCTCCCTCCTCCACCTCCCCATCCTCCGCCCGTTCTACCTCCGCTACATCCTCGCGGCAGCCGCATCAGGCCCCTGCCGCTGCCGCCGGAAGGAATCCCTGGTAGGCATGGGAAACTACATCTCGCGGGTGCTCCGGAAGAGCTCTAGTGACCGTGGTAAGGCGCCGCCAGCCGACGATACAGCCAAGCAGGTACCCAATTTTTAATCTAATTGAGTACATCTGGCATGTAATTTGCTTGAACCGTCAGTTTGCACAGTAAAATTGACAATGCAACATAGTTTCAAAAGATGGTAATACGTTTGAGTCAATCCAAATTGCTTTTAGTGAAATAAGTGGATAAGTAGGAATTTATATTAGCTATATTGTATCAAGTATTTTAATCCACAAGTGAGAGTAAAAAGTTAAGTACTTGCATTTCCAGCCTGTTCATTTTTTTTTCTTTTGAAGTCAAATACTGTTAACTAAATTAATTTGAGCACTGCAAATTGACCTTTGTTGTCATATTTTATCCTTGACTATTCCAGGATCTATGTGAAGTTTTTACACCTCTGACAAATGAAGAAGAAAGTGAAGTAAACAACATTTTGTATGGCAGTGATCAAAGGTATTGTAGGCAACCATGAATTTAATTGGCTGATTACTTCTCCTATATCTTTAGCACAATCAGGAATTGATTTTCCCTTTCTTTTTTTGCAGTAAGAAAATAATAGTGATGCATGGACCTTCCAATATTGATATTACTAAAGAGAAAATCTGGTGCTTGAGAACTTGTAATTGGTTAAATGATGAGGTGAATACGGCCTGTCCATGGAAGGAATCCTGAAGAATATGTTAAACAAATGTCCCATTCTTTCTGATCTTGACATTAGTGGTTCCATTTTCCATGCTTCACAGAACCAAGACTGCATCAGCATTCTACTTTTGTTCCTTGCAGGTCATTAATTTGTACCTTGAATTGTTAAAGGAGAGGGCGCAAAGAGAACCAAAAAGATTTTTGAAATGCCACTTCTTCAATACATTCTTTTATAAGAAGGTTAGATAATTTGCATATTTTTCTTTCCGGTGCTGTATGATGGAATGTTCTTTTCAATATTTCTGTAGTTCTGTTACACACACCATTTTATGATCTTCAGCTTATCAGTTGTCTCTTTGAAGCACTATCAAGTGATATTTATGCAATTATTACTTGACTCTTTTCCCTTTTTTTGAGGGGAATTTATTATTTTCCTTCCATAGTAGGAATTATCTGCCAGTTAGCAGGAAAACCTGTGATTCTTTTCCTTCGATAGTGGAAATTGTTGGCTAGTTTGCACAAAAAACCTGTGTTTCAACACTCAAGCATACGGTACCATACATTTGTTTGAGAACACGCAATTCCTACCTTATCCTTAATATATGTTGATGTGTGCCTTGTATTTACTTAATTGATGACCCTTTTCTTGAGTTACAAATTTTGTGTGGTTGTTATTCTCTTACTTTTTTTTTTGCTAATTTTCCTTGTAGGTTGTAACATCCCTTACTATCCCTTACTATTTATTAATAACCTTGCTTAGATATCAAATGAATTCTAGCAGTAGTTTGCACCTTCATGATTTTCTGAATTCTCTTCAGCTTGCTTGTGGAAAAACTGGTTATGACTATCAATCTGTAAGAAGATGGACAACCCTCAATAGATTGGGCTATGGGCTTGTTGAGTGTGAGAAAGTAATGTTACTGTTATTATTTTTTCAATGTTTTTCATGTCTGTTTGTCTTTCAAACAAATCATGAGATTTATTGTGCAGATCTTTATTCCAATACATAGAAATGTGCATTGGTGCCTTGCGATAATAAACATGAAGGATAAAACTTTTCAATACCTTGATTCTTTTGGCGGCATGGACCATGCTGTGCTGAGAATACTGGTAAGCTTAGCTGATTACAAGTATATTACTGGATTAGAGAGCCAGTTACTTCCAATTAGTTCAGTTACAAGTCCGACTTATGAGACGTTAGTTTGGTAAGATGGCACATTGATGACTTAACAGTTGATTCAGTCATAGCATTTGGACTTAATTGCTCCAAATTAATTTTGCTAAGTATGTTATGGTGCTCTCTATTTGGATGCCATAAATCTCCAGCTCCCACAATAGTTAAAGGGTGGACAAAATTTTACCCCTGATGCATTCATGGACTTATTTTTTGGTGCTATAGAAATGAGAAAGGTCTTACGTTATCACAAATATTTGTGATATCTTAAAATCTGACATGATTCAGAGTTATTCTTTGAAATTTAAATTGTGACTTACGAAGCAGTAATCCATGTTAATTAGAATTTACCCATCAGGTGCTATTTCAAGCTTTCAGTTATTTTCAAGTGAAGTTCTGTTTTCTATTCCTCTCAGGCTAGATATATCAGGGATGAATTGAATGACAAGAGTAACATACAGGTAGACACCAGTTCATGGCTGAAAATATCATCAGATTCTTGTCCTTTGCAGCAGAATGGGTACGTTCTCTTTACATGCTACATATGACCTACCAGAATTACGTATGGAATGAATAATGGTTTACCTTCGGTTCTGCAATGAACACAGATGAAGGTCTAAATTTTATCACTCAGTGCATTAATACATTATCGACATTTGTGTTGTGCATATCAATGACCAAGCATGGTCCGCATGGATATGTCTGACACTGAATTTCTCTTTTAATAGGTGGGATTGTGGTATGTTTATGCTTAAGTTCATTGATTTCCACAGTAGAGGTATTGGCCTATGCTTTACTCAGGTGAGTATAGTACAAAATACTGGATTCAAGTTATTATATATGCTTAATCTGTTCACTCATTGATTTGCTGTTTGCACTATTAAGTCAATCTCAAATGAAGAGTCTTAACCTGCTAAGATGAAGCACAATCTCTCTCTTTCATACATCTAAAGTGGAGTAACATGTACCTTGTACTTAATTGTGTTTGGTGTCATCTAAATCAATCACTATTTGCAGGAACATATGGATTACTTTAGGAAACGAACAGCGAAGGAGATACTGAGATTGAGAGCTGACTGAAAAGATGTCCTTTCTTGTTCACACACTCTTGGGCATTTTGTCAAGGTAGGTATTCTTGCGACCTATTGGAAAAGACATAATGATGTATTTATTTTCTACTAGGGTGTTTTGTTGATTACAAGTGGCTGGAACAATTTTGCATAATTCTTTACCCCTTCATTTTCTAGGATCTTATTTTGATAGAATAGGGAGAGATTGAAATGAGACCCCAAGGGAACAAGACAGAGCTAACAGAAGTCGGAATGTAAGAGCTTAGATGATTAGAACAAGAATGCTTAACCCATACCATGTATAGCCGCCAATTAGAACTATAAAGAGATAAAAGGGGGTATGAATCCACATTTTGTTATTCTTTAAAATATTCAAGTGAACTGTTATGAAATAGATATGAGGTGATTTACATCA
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| CDS seq | ATGTCCCCCTCCGCCACCTCGCCGCCGAATCGCCCACACCGCAAGCGCCGCGCCGGTGCCGGTGGCGGTGGCGCTGACGACGGCTCGACCCGCCGCCGCGGCCGCAGCGCTGTCCTCCTCGGCCCCACCCACTTCCCCGCCGTTCGCTCCTTCGGCCTCCGCCTCGCCCTCGTCGTCGCCCCAGCCCCACGTCACCGCCGCAAGCAGCGCCCGCTCCACTACGCCTGCCGCCCCACCTCCCTTCCCTGTCGCCGCCGCCGTCGCCTCCGCAGTATCATCTCCCTCCTCCACCTCCCCATCCTCCGCCCGTTCTACCTCCGCTACATCCTCGCGGCAGCCGCATCAGGCCCCTGCCGCTGCCGCCGGAAGGAATCCCTGGTAGGCATGGGAAACTACATCTCGCGGGTGCTCCGGAAGAGCTCTAGTGACCGTGGTAAGGCGCCGCCAGCCGACGATACAGCCAAGCAGGATCTATGTGAAGTTTTTACACCTCTGACAAATGAAGAAGAAAGTGAAGTAAACAACATTTTGTATGGCAGTGATCAAAGTAAGAAAATAATAGTGATGCATGGACCTTCCAATATTGATATTACTAAAGAGAAAATCTGGTGCTTGAGAACTTGTAATTGGTTAAATGATGAGGTGAATACGGCCTGTCCATGGAAGGAATCCTGA
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| Protein seq | MSPSATSPPNRPHRKRRAGAGGGGADDGSTRRRGRSAVLLGPTHFPAVRSFGLRLALVVAPAPRHRRKQRPLHYACRPTSLPCRRRRRLRSIISLLHLPILRPFYLRYILAAAASGPCRCRRKESLVGMGNYISRVLRKSSSDRGKAPPADDTAKQDLCEVFTPLTNEEESEVNNILYGSDQSKKIIVMHGPSNIDITKEKIWCLRTCNWLNDEVNTACPWKES |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0410100 | OsNip_03t0410100-01 | Chr03 | 16888652 | 16892606 | + | RAP2018-11-26 | ||
| CDS seq | ATGTCCCCCTCCGCCACCTCGCCGCCGAATCGCCCACACCGCAAGCGCCGCGCCGGTGCCGGTGGCGGTGGCGCTGACGACGGCTCGACCCGCCGCCGCGGCCGCAGCGCTGTCCTCCTCGGCCCCACCCACTTCCCCGCCGTTCGCTCCTTCGGCCTCCGCCTCGCCCTCGTCGTCGCCCCAGCCCCACGTCACCGCCGCAAGCAGCGCCCGCTCCACTACGCCTGCCGCCCCACCTCCCTTCCCTGTCGCCGCCGCCGTCGCCTCCGCAGTATCATCTCCCTCCTCCACCTCCCCATCCTCCGCCCGTTCTACCTCCGCTACATCCTCGCGGCAGCCGCATCAGGCCCCTGCCGCTGCCGCCGGAAGGAATCCCTGGTAGGCATGGGAAACTACATCTCGCGGGTGCTCCGGAAGAGCTCTAGTGACCGTGGTAAGGCGCCGCCAGCCGACGATACAGCCAAGCAGGATCTATGTGAAGTTTTTACACCTCTGACAAATGAAGAAGAAAGTGAAGTAAACAACATTTTGTATGGCAGTGATCAAAGTAAGAAAATAATAGTGATGCATGGACCTTCCAATATTGATATTACTAAAGAGAAAATCTGGTGCTTGAGAACTTGTAATTGGTTAAATGATGAGGTGAATACGGCCTGTCCATGGAAGGAATCCTGA
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| Protein seq | MSPSATSPPNRPHRKRRAGAGGGGADDGSTRRRGRSAVLLGPTHFPAVRSFGLRLALVVAPAPRHRRKQRPLHYACRPTSLPCRRRRRLRSIISLLHLPILRPFYLRYILAAAASGPCRCRRKESLVGMGNYISRVLRKSSSDRGKAPPADDTAKQDLCEVFTPLTNEEESEVNNILYGSDQSKKIIVMHGPSNIDITKEKIWCLRTCNWLNDEVNTACPWKES
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.135063 | 0.718530 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g29630 | RBH | 0.865292 | 0.433060 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0410100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0021460 | RBH | 0.255854 | 0.0 | 0.394851 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0021280 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0021340 | RBH | 0.378515 | 0.000000 | 1.103502 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0021340 | RBH | 0.000000 | 0.032215 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0021180 | RBH | 1.472447 | 0.000000 | 1.715243 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0278700 | RBH | 0.4006 | 0.77058 | 0.534492 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0020910 | RBH | 0.106736 | 0.061434 | 0.133506 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0283000 | RBH | 0.427924 | 1.1235085 | 1.776112 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0021170 | RBH | 0.0 | 0.066326 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0021200 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0021280 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0021140 | RBH | 0.000000 | 0.262777 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0021020 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G020980 | RBH | 0.000000 | 0.0 | 0.193797 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0020860 | SBH | 0.227023 | 0.0 | 0.909672 |
