Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0400000 | OGI:03043690 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:16218172-16221298 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCTGCGATTAGGCGGCCACGGACGTGCGTGTGGGACGTCGAGGAGACGGGGAATCACTGGATCCAGGAGGTCGGTGAACCGATTTGGAGAGGGAGCTGCATGATCTGTGGCATTGGTGTCCCGTTCCGGACAGCGGCGGTCTCCAGTACGGCGGGTGCTGCTGGATCTGCCGCATGGAGGGCTCCTCGTCAGCTCCATCCTACCTCTTCTTCTGCCTTTTTGGAAGGAGGTGAGGAGAGGAAAGTTTCCTCTGGAATTTCATACTGCATGTTATATCTTTGCCAAGTTGGTGGTCTTAGTGTGATACTGTGATTAATTTGGACCGATGAAGATATGTGTATTGAATTTTTCTTTGCAAGTTTAAATCAGTGTAACACTATGAATGTGAGCGTGTGAATGCAGCTTGTAGTGAAGCTTTGTTGAGCTTACGCAAAGCAGTGAAGGGCATCGGTGCGGGGTTCCTAGAGGATGCTGCCACCTCCATCCCCTTGCGTCACGGCCGTGCTGCCCTGCTGGTCCTCTGGCACAGCATCTAAGGTCATCTGCCACCACAACCAGGTTGCATCTCCACCGAATGTGGCCCCACTTTGATGGCGGCGAGCTTTGCTTTGGTAGTGTTGCTGTCAATTTGGCTGTGCATTTCTTTAAGGGGTTCATCTACGATCCATTGTAGCATGCTGATGACTTTAAATTACAAATTAGTTAATGCATAAGATTCTTTGTTTCCAAGTATAAGAAATTGATATATCTTTTGTTGAAGTATGAGTATGCTGATTTGTTCCAGCAAAATATAGCAATGTACAATATTTTTTGTGGATAATTTGATAATGCTCCATCCAAACGTAGTCATGCATCTTCATCAAAATAGATTGTGGCTTTGCATTTTTAGTTTGTTCATTACTAATTATGCCCCTTGAAGGTAGTGACTTCTATAAAATTAATTTATAACGAGCATGTTTGTAACTTGACATTAGATGACCTTTTACATGCAGAATCTGAGACTAAACTTATACACTAATCACACTAATCACTACTACTGCTGCTATATATTACTGTTGTACCAAAAATATACAAGTGCATTTGATAAAGGTTGTACAGGTCTGAATCAGAACTGTATATTACTGTTGCACCAAAAATAAATTAATGAACTGTAATTTTCTCTGTATTATTTTTGGATGTGATTACTAAAGCTCGCTATGTGTCTGCTCTTTTTGCACTATAGAAAATCAATTTATCTCAATTTGTTGCACAATCCATCTATAGCTTCAATTCTATTCTAAGCTATCTAATCTTCCCAACGCCAATCAGCTGCTGCATTACAATGGATTACATTATTGCTTTGCGAATAATATTAGAAGAACCAAAGAAAACATGATGGATTGGTGCAAGATCAAAGGACTGGCATAGCTGTCCACTTCTCTTATTCTTGTAGGCTTTAGCTGGTGCAATGGTTTCAGTAGCAAAACTAGGCTATGATAGGCTGATGCCTGCCTTAACACGCCAAGACTCCAGGTGCACACAACATAGTAGATCAGAACAAAGGATGCCTGCATTGGTGCCATCCTCCAGGAGGAGAAATGGCACCACTGGCAACCAGTTTGGCTGATCGTTGTTTGTTGCCTACCTTGAGTTCACTGTTTAAATTATATTTGACATGTTCTTTACGGAAGTGAAAATTTAGTTGATTATTTGTTTACCAAATAGGCATATATTAGTTCTATAATTTGGTTGTTTGTGAACAAGAATTCTGTTGCAAGTTATAGCTGAAGATTGGTAACTCTATAAAAAAAATTAATTATCATGACATAATAGACATTAACTCTGAACATATTAAATTATCATGACATCCCCACGATGTGCAACAGAATTTAACTTGATATAAAAAATATATGATGTTACATTGTTTTCTAATTTGCATTCAGTAATGCCTATGATATTTTACAAATGTAACTGACTTGTCCTTCAGATGCTTCTCATGTTCTACATTGGATGCATCCAGTTTTTATTGCAGCTCACTTTGAATCTTCTACCTAATGCTTCTAATATTTATGCCCTTTTTTATTTAATATGTGATGATTAGGTAATGCTTAGACTAGCATATAAAAGATTGGCTTGATTAGGGTTCTAAAATTGAAGTTTTCTTTGAAACGACTAATGTTATTATTTGCTCTTGCCATAGAAGTGGTTTTTCAGGACTCTTGATAATATAACTATTGGTTTGGGATGATAAAGCTTCAGTTTAGGACGATGAGCGTTGCCCTGTAGGTTAAAATCCCATTTTAACTAAGTTATGTATTATTTGACTAGCTTGCACTTTCACCCTCTTCCTTTAAACATACTGATAGTATCTGCTCATAAAATTATTGTGCTTGCTATGATTTAGGTATTAAAATCACATACCTTTTATAATCTATGTAAAAGATGTACAACCAGAAACCAATAGGTTAACTTGACAGATTGACCTTTACAATCCTACAATACCGTCCATTCCAACTTTCTTTGTTGAATAAATATGCTGCTGTGTGCATTATTTGGTTCACATACCTGATTATTAGAAAATTACTGAAAACAGTTTGGATTGTTTACCTGTTTGTTTTTTTAGTATGGATGATCATTACTTTGCTTTTGGTTGGTACCTTTTTGTGCCACTTCCATTTGCACATCAACAAAAGGGCCCCTGTGTGAATTCGGTGAAGGCATCCAAACCATATTAGTAGAATTTAGCCATGTGTAATATAGTTTTATAGTCCTATACTCCTATGTGCTCATCTAGCAGAACTATTTCAATGCTACCACTATAAAACTACTATGTACTGTCTATCCTGCCATCGAACATGTGGCACATTTTGCTATTTAGGACTGTCCACAATCTGCATATATGTTGTGATTAGCTTTTAGCCTCTATGACAACTATCAATATAAATGCTCACGTCACAGAACTTCATTTTTTGCACTACACTAAACCTAAATCTCACACCATGTCGTTAGCTTATACTTGACCTTCACAGACCTTGCAAATAGCATTTGTTTCAGTTACCTACCAGAACCAACAGATGTAATCAATGATTTCCCTCTCCTGGCACCACTGGTGCAGTGCGCGAAGCGCGTGTTCACCTCTAGTTGA
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| CDS seq | ATGCCTGCGATTAGGCGGCCACGGACGTGCGTGTGGGACGTCGAGGAGACGGGGAATCACTGGATCCAGGAGGTCGGTGAACCGATTTGGAGAGGGAGCTGCATGATCTGTGGCATTGGTGTCCCGTTCCGGACAGCGGCGGTCTCCAGTACGGCGGGTGCTGCTGGATCTGCCGCATGGAGGGCTCCTCGTCAGCTCCATCCTACCTCTTCTTCTGCCTTTTTGGAAGGAGCTTGTAGTGAAGCTTTGTTGAGCTTACGCAAAGCAGTGAAGGGCATCGGTGCGGGGTTCCTAGAGGATGCTGCCACCTCCATCCCCTTGCGTCACGGCCGTGCTGCCCTGCTGGCTTTAGCTGGTGCAATGGTTTCAGTAGCAAAACTAGGCTATGATAGGCTGATGCCTGCCTTAACACGCCAAGACTCCAGGTGCACACAACATAGTAGATCAGAACAAAGGATGCCTGCATTGGTGCCATCCTCCAGGAGGAGAAATGGCACCACTGGCAACCATTACCTACCAGAACCAACAGATGTAATCAATGATTTCCCTCTCCTGGCACCACTGGTGCAGTGCGCGAAGCGCGTGTTCACCTCTAGTTGA
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| Protein seq | MPAIRRPRTCVWDVEETGNHWIQEVGEPIWRGSCMICGIGVPFRTAAVSSTAGAAGSAAWRAPRQLHPTSSSAFLEGACSEALLSLRKAVKGIGAGFLEDAATSIPLRHGRAALLALAGAMVSVAKLGYDRLMPALTRQDSRCTQHSRSEQRMPALVPSSRRRNGTTGNHYLPEPTDVINDFPLLAPLVQCAKRVFTSS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0400000 | OsNip_03t0400000-00 | Chr03 | 16218172 | 16221298 | + | RAP2018-11-26 | ||
| CDS seq | ATGCCTGCGATTAGGCGGCCACGGACGTGCGTGTGGGACGTCGAGGAGACGGGGAATCACTGGATCCAGGAGGTCGGTGAACCGATTTGGAGAGGGAGCTGCATGATCTGTGGCATTGGTGTCCCGTTCCGGACAGCGGCGGTCTCCAGTACGGCGGGTGCTGCTGGATCTGCCGCATGGAGGGCTCCTCGTCAGCTCCATCCTACCTCTTCTTCTGCCTTTTTGGAAGGAGCTTGTAGTGAAGCTTTGTTGAGCTTACGCAAAGCAGTGAAGGGCATCGGTGCGGGGTTCCTAGAGGATGCTGCCACCTCCATCCCCTTGCGTCACGGCCGTGCTGCCCTGCTGGCTTTAGCTGGTGCAATGGTTTCAGTAGCAAAACTAGGCTATGATAGGCTGATGCCTGCCTTAACACGCCAAGACTCCAGGTGCACACAACATAGTAGATCAGAACAAAGGATGCCTGCATTGGTGCCATCCTCCAGGAGGAGAAATGGCACCACTGGCAACCATTACCTACCAGAACCAACAGATGTAATCAATGATTTCCCTCTCCTGGCACCACTGGTGCAGTGCGCGAAGCGCGTGTTCACCTCTAGTTGA
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| Protein seq | MPAIRRPRTCVWDVEETGNHWIQEVGEPIWRGSCMICGIGVPFRTAAVSSTAGAAGSAAWRAPRQLHPTSSSAFLEGACSEALLSLRKAVKGIGAGFLEDAATSIPLRHGRAALLALAGAMVSVAKLGYDRLMPALTRQDSRCTQHSRSEQRMPALVPSSRRRNGTTGNHYLPEPTDVINDFPLLAPLVQCAKRVFTSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0753400 | SBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g28175 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0400000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0005720 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0033460 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0020880 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0020880 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0019640 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0019500 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0032300 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0019680 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0019750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0019620 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0019530 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G003230 | RBH | 0.561402 | 3.280952 | 2.436106 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0033090 | SBH | 0.000000 | 0.000000 | 2.663928 |
