Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0393300 | OGI:03042600 | 5/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:15791600-15795702 | ||||||||
| Gene Symbol | SCP15, OsSCP15, SCP16, OsSCP16 | ||||||||||
| DNA seq | TTAGGTAGTACTCACTTGCCCATTGTACACTGTGACGTTGACACCCAGAGATAATAGCTCATCTACCTGCAATAACAAAGTTAATAAACTATATATATTAGCTTGTTAGCACCAAAAATTACATATTGAGAGAATATAAGGAATTGTGTGTTGGCTTACCTCGTTTATTGCTGGCTTCATGAATTCGTTCTCCAGCGCGTTGAAAACAGCGACCGTCGCCAGTTGCCACCTGCAGTTTTATAGAGTATGATTATTGCAGCTCACTGTGATAAATTTGACTATGAAGAGACAATCGAATACTGTATCTAACTAGTTCACGCTCACGTACACGAGGTTGTTGGGGATGATCTTGAGCTTTTCCTTGATGACACCGTTCATGATGCCCTCGATCGTGTTGGGGCCAGACGACCCCGACAAGTCCTGCCCGACAAACCTCATCAACGGCGATCCACGGACTTCTTTTTGTTTGTCCTCTGCAGCTAGCACTCGCAGATCTACGCCGCTGGTGTTAAACAAGAAATTGAAAATATTCTGCAATAGCAAAACCATTAAACATTTGTTGGTATTTGTTATAATTAAGCACAAAAAACTGCTAAACTCATATATCTGCAGTTTAGTTTGCATTATGTTAATGCATGAGCAAATCGAGTATTATTAACGTGAGCACATAGAGAGAGAGAGAGAGATACTTACAACGCCGCCACTACTTTTGTCGATCAGATCGATAAGGCCCGTGAACGTCTGCAGTGAGGCGGCGAACTGCCCCGCCGCGGATTGCTCGCTCACCTTCTCTGCCAACCTAATGCGTAGAATGTGATTTGATTAGAGACGAGCTAGCTAGCCGTTCAGATTCATTCAGAAAAGCACTCCTATGCAAATGTTAATTAGTAGTAGGGGTAGCTTAGCTTACTTGTTGGCATCGTCGATGGCGTTTTCGTCGAGCCTCGACACGTCGTCCAGAAGCCGTGCGTACGTGAGCTGCAAGGGCGATTGATTCAACCAGTTTGAGTTCTGAATAATACAGTAGCAGCTAGCAAAGAGATAGATAGACGTGTGTGGTAGTGTTCTGGTGTTGGTATATTTGTTGCTCACCGAGAAATCCGTCGGCGAGATCCACCCATCCCTGATAACAACACCTGTGTGCCAGACAAGTGGAAGAAAATTGTTAGGCATGATAAATTGGCAATGAACATACACACAGCTAATCAGTTATATTGATACATCTTTGTTTGGTTAATCAGTGGTAGAGGCAGGTTAGCTCATGGGGTGTATACATCTGTACCTATAATTATTTTTCACCGATACCAAATCTACACTCACTGACTTGGCTTGCTACTGGGCTGTAATGGGCTGCATATTGGGCTGGCTGGCTGGGGAGCTGGGGAAGGCTATGTGTGGGGCTAGGCCAGACGAGTAGGATGTACTAGGCCACGAGGGTTTAGAAAAATCTGAAAAATATATGTGTACTAGTAATTCACTAAAAAAAATTCTTTAATGAGTAGGGCTCGGGCCCAAGCTACTTCAGGCTCACTATTAGTCTGTACACAAATACAAATATAGGATATCTTTACTGCTCTAATACTAGCTGTCCAAGGTAGTAAAAAAACTATCTATCTATCTATCTATCATTATTATTATATAGTAAAAAAATCTATTAAACATCCTACGAATGCTCTTATATCATCATGAAGCATACCTATAAACGATATTAAGCCACCACATGGCACATTAGTAAATTAGAGAAAATACTTAGAAAATATGAAAAAAAAGAGAGGAAAAACCTCACCCTTAATTTTCCCTTAAGTTGGAGAACCAACTATTTATTTGGATTTGGTCTAATGCATCAGGCATATAGTTTGATCCTTTCACCCGAGAAAAAAAAAAACATGCTTGCACACCGGGATGCTCGGGCTAGCACTTCAATTCGATTAGGTCAATTGATTGGCAGTACGTTCCTTTGTTTGAATTATTGGATGATTTTACAAATAGTGTACAAATAAGTATCTCAAACAATTTTTATTCCATGGTCAGTGACTTCCTCTGAATGACTTGAATATAATATTTGGTAATTAAATAACCAACAAATAAGTATGCTTTAAATCAAATCAAACATTTCACTTACGATAACGTTAAACAACCTCTAGAACGCTCTTACAAACTTCTCTCACCGCCTATAATAAATTAGCTTCCAAATTATAGACAGTCATATAAACTCTGAGAAGAAAAACAAAACAAAACATCTAGCACTATTTTTTTTTTAATCAAACCACTGCAGGGACGCCCCGCAATTAAAATATTATATTAAAAGAAAGGGAAAAATTACAGATTTTCATTCACTAATGTAAAACATAATTCTCGATCACAAGAAGGATTGAGCCTATACAAGAAAAGGAGAAGATCATTTGTTTTTTTTTTAAAAAAAAGACTCCATGAAGTTCAACTTAAATCCGTTATCCCATTATTTGTATCCATTGATTTGATGGTAAGTACAATCCACAAGGACAACCCCTGCTGCCCCCCTCTTCCATTCTTCTTGTCTAGGTGTATTGGTTGGATTTGATGAATGTGAGATAGTTGTCCCAATAATTTTGTCATATAGGTATTTTTGTGCTATATATTACAGTCCGAGTTCTAAGGGACATTAAAAGAATTGGAATATTCTACAATATCATAATTATGGATAAAAAACCTATGTAGCCTTAAATTAATTATGGTCTTTAGAGAGAGAAACATAGATCTGTAGTATCCAGCCACCAACGGTAACACTCAGTCAAAAAAAAAAAAAACTCAGCTATAAGTACAGTGTCTCGATCATCCTTCCCCCCCCCCCCCCCCCAACCCACATTTGTCTCACTTATATATCCCTATATATATTTGCCAATTGCCAAGTCACAATTGTCTATGCAATGCTAGCTAATGCATCACATTAACTATAAAGATATCAATCATCAATCCACTAATATAATATGCCTGCCATCAAATAGTAGCTAGATTAAGACAGAGGGAGAAATTAAGCCATATATCTCAGTAATGGGGTTGCCATCGAGCAATAAACAGATAATAAAAAGAGTAATTCTACGGTCCTTGAGGAGGTACCATGAGGTACCAAAAATTTAGTGTAAAATTTAGTACATCATGATACCTTATAGTACCTAGGTACCAAGAGGTAACAAATTTACAATAGAAAAAATGGTACCTCATGGTACCTCCTCAAGAACTGTAAAATTGCTCTAATAAGAAAGCCATCTATTAGTAATGTGTTGTGTTTAAGTGTGTGATAAACTTCACCTATTGGTCAAATGGTCATGTGTTTCATTATATTCAGTTTGATTAATTATAAACCATACTCTTGATAATTGGACTTCGCGTGACAAAAATTGGCTCTTGATAAATAAACTACAGTCTAATGCCCATTTAGCAACTTAACTTGTCTCCATGAATACATGTTGGGAGCTATAGGCATTGATCTTGGTGATTCTATAGAGAGAAACCATATTTCCACTGTCACGCAGCTTTAAAACTATACATCCGGTTGTCAAATCCTCCAAGAAACTAGAGAAAATTCTTAAAGTTCTTAGAATAATAAACTAAAAAAAATATAAACCTTAATTTGTCGCAGAAATCAGTAGGGCCCCTTATTTTTAGACACGCGAACACGTTCCTTATCCATCCATTGAAATCATTGTAAACCCTTTCTTTAATTTATTCTAAAATATACTTAGGAAGCAACTCTATATTTTTGCATGTCGCAGCAATACTTTTTCATAAATTCAGTAATCCACAGTGAGGGTTAACCTGCTTTGTGTTGGTTTCTACTTAGGCAATTGAAATATTCAACTAATTTAAGTTTGGTCCTTTGAACAAAATCATAAACAAATGTCCAAAGCAACCCAAAATTAGCAAATCGATCGTTTAACCAAGAAGTCCCATATAGGTTAATCTGTTTGGTGTTGGTTTCTACTTCCTTTTTGTCTGCTCTCTATATATGCATGTTTGCACTCAAATTAAACTTTGTTATTCTGCAAACAAACACAATTACTACCTCCGAGCGTGAGGTCGAGGTCGCCGGCATGGATGGACTTGGTGAGGGAGACGCCAATCAT
More
|
||||||||||
| CDS seq | ATGATTGGCGTCTCCCTCACCAAGTCCATCCATGCCGGCGACCTCGACCTCACGCTCGGAGGTGTTGTTATCAGGGATGGGTGGATCTCGCCGACGGATTTCTCGAACTCAAACTGGTTGAATCAATCGCCCTTGCAGCTCACGTACGCACGGCTTCTGGACGACGTGTCGAGGCTCGACGAAAACGCCATCGACGATGCCAACAAGTTGGCAGAGAAGGTGAGCGAGCAATCCGCGGCGGGGCAGTTCGCCGCCTCACTGCAGACGTTCACGGGCCTTATCGATCTGATCGACAAAAGTAGTGGCGGCGTTAATATTTTCAATTTCTTGTTTAACACCAGCGGCGTAGATCTGCGAGTGCTAGCTGCAGAGGACAAACAAAAAGAAGTCCGTGGATCGCCGTTGATGAGGTTTGTCGGGCAGGACTTGTCGGGGTCGTCTGGCCCCAACACGATCGAGGGCATCATGAACGGTGTCATCAAGGAAAAGCTCAAGATCATCCCCAACAACCTCGTGTGGCAACTGGCGACGGTCGCTGTTTTCAACGCGCTGGAGAACGAATTCATGAAGCCAGCAATAAACGAGGTAGATGAGCTATTATCTCTGGGTGTCAACGTCACAGTGTACAATGGGCAAGTGAGTACTACCTAA
More
|
||||||||||
| Protein seq | MIGVSLTKSIHAGDLDLTLGGVVIRDGWISPTDFSNSNWLNQSPLQLTYARLLDDVSRLDENAIDDANKLAEKVSEQSAAGQFAASLQTFTGLIDLIDKSSGGVNIFNFLFNTSGVDLRVLAAEDKQKEVRGSPLMRFVGQDLSGSSGPNTIEGIMNGVIKEKLKIIPNNLVWQLATVAVFNALENEFMKPAINEVDELLSLGVNVTVYNGQVSTT |
||||||||||
| Function | Serine carboxypeptidase-like 51 [UniProtKB/Swiss-Prot:Q67Y83] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0393300 | OsNip_03t0393300-00 | Chr03 | 15791600 | 15795702 | - | RAP2018-11-26 | ||
| CDS seq | ATGATTGGCGTCTCCCTCACCAAGTCCATCCATGCCGGCGACCTCGACCTCACGCTCGGAGGTGTTGTTATCAGGGATGGGTGGATCTCGCCGACGGATTTCTCGAACTCAAACTGGTTGAATCAATCGCCCTTGCAGCTCACGTACGCACGGCTTCTGGACGACGTGTCGAGGCTCGACGAAAACGCCATCGACGATGCCAACAAGTTGGCAGAGAAGGTGAGCGAGCAATCCGCGGCGGGGCAGTTCGCCGCCTCACTGCAGACGTTCACGGGCCTTATCGATCTGATCGACAAAAGTAGTGGCGGCGTTAATATTTTCAATTTCTTGTTTAACACCAGCGGCGTAGATCTGCGAGTGCTAGCTGCAGAGGACAAACAAAAAGAAGTCCGTGGATCGCCGTTGATGAGGTTTGTCGGGCAGGACTTGTCGGGGTCGTCTGGCCCCAACACGATCGAGGGCATCATGAACGGTGTCATCAAGGAAAAGCTCAAGATCATCCCCAACAACCTCGTGTGGCAACTGGCGACGGTCGCTGTTTTCAACGCGCTGGAGAACGAATTCATGAAGCCAGCAATAAACGAGGTAGATGAGCTATTATCTCTGGGTGTCAACGTCACAGTGTACAATGGGCAAGTGAGTACTACCTAA
More
|
|||||||
| Protein seq | MIGVSLTKSIHAGDLDLTLGGVVIRDGWISPTDFSNSNWLNQSPLQLTYARLLDDVSRLDENAIDDANKLAEKVSEQSAAGQFAASLQTFTGLIDLIDKSSGGVNIFNFLFNTSGVDLRVLAAEDKQKEVRGSPLMRFVGQDLSGSSGPNTIEGIMNGVIKEKLKIIPNNLVWQLATVAVFNALENEFMKPAINEVDELLSLGVNVTVYNGQVSTT
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g27530 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0393300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0020570 | RBH | 0.0 | 0.0 | 1.630373 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0020440 | RBH | 0.0 | 0.0 | 0.738521 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0020430 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0020430 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0020300 | RBH | 0.0 | 0.000000 | 0.870485 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0261700 | RBH | 0.0043065 | 0.0027835 | 0.0757845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0020090 | RBH | 0.0 | 0.0 | 0.284002 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0264000 | RBH | 0 | 0 | 2.553346 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0020280 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0020300 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0020390 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0020270 | RBH | 0.0 | 0.0 | 0.125635 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0020140 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G020130 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0019970 | RBH | 0.0 | 0.0 | 0.0 |
