Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0364400 | OGI:03038130 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:14206981-14209160 | ||||||||
| Gene Symbol | RLCK106, OsRLCK106, BBS1, OsRLCK109, RLCK109, OsBBS1, OSBBS1/OsRLCK109, PTK4, PTK4/BBS1, OsPTK4, LMM24 | ||||||||||
| DNA seq | GGCTCGGATCGGAGCAGTTGGCTGCAGCCGCAGTTTGTTGGAGCGGTTGGCCCTCGCACTCGCACTACCCCCCGCCCTTTTTCTCCCGCCATATTTCTACTTCTCCCGGCCCACCCCCCCTCAGCTCGCCCTCCTCCCGCCCCCCACCTGCTCGATCTCCACTCCGTCTCCATCTCCATCCGATCCAAGATGCCGCCGAGGCAGTGGAGGCCGATGCTGGCGTCGGCGACCAAGTGCTGCGCGGCGGAGGACGCGGTGGTGGCGGTGGATGGCAGCGGCGGCGGGGGCGGCCTCGCGCGGTGCAGGCCGGCGCGGTCCGAGTTCTCACGGAGGCTGGCGTCGTTCCGGAAGCTGTCGTCGATGACCAACAGCCCGGCGTCGTCCGTCGCGGGGGCGGCGGAGGGGGGGAAAGACGACGGCGAGGAGGGGGGCGGCGGCGGTGGCGGCGTGTCCGGCCCGCTGCAGCTCTACTCCTTCAGCTTCTCCGAGCTCCGGTCCATCACGCACGACTTCTCCAGCAGCTACCTGCTCGGGGAGGGCGGCTTCGGCGCCGTCCACAAGGGCTTCGTCGACGCCGGCATGCGCCCCGGCCTCCTGCCCCAGCCCGTCGCCGTCAAGCAGCTCGACATCGCCGGCCTCCAGGGCCACCGGGAGTGGCTGGTATGTCCATGCTTACTGCTTTCTTTCCTCCTGCCAATTGGTACTGCTTTTCTCTGGTAGTAGTTAAGCTCAAGTCGATGTCGTCCATGGCGGACATGGCGTGCACGGTGCAGGCGGAGGTGATCTTCTTGGGGCAGTTCCGGCACCCGCACCTGGTGAAGCTGCTGGGCTACTGCTGCGAGGACGAGGAGCGCCTCCTCGTCTACGAGTTCATGCCGCGCGGCAGCCTCGAGAACCACCTCTTCAAGAGTACGCACTTAGCTATAGCTAGCTCCGGCCACATCTCCGTTTCCGCGCCGCCGCCGCCGCCGCCGCCGGCACAAACTGACCGATTCGATCCATGTCCATATTGTGCAGGGATATCGGCGACGGTGCCGTGGGGCACGCGTCTGAAGATCGCCATCGGCGCCGCCAAGGGCCTCGCCTTCCTCCACGGCGCCTCCACCCCCGTCATCTACCGCGACTTCAAGGCCTCCAACATCCTCCTCGACTCGGTACACTACACACCACCTAGCTCCTTCTTCTCCAATTCGATCGATCGCCCGAACTAACTTGAGCTTGCAGGAGTTCACGGCGAAGCTGTCGGACTTCGGGCTGGCGAAGATGGGGCCGGAGGGTTCGGAGACTCACGTGACGACGCGGGTGATGGGCACGCACGGGTACGCGGCGCCGGAGTACGTGATGACGGGGCACCTCAACATCAAGAGCGACGTGTACAGCTACGGCGTCGTGCTCCTGGAGCTCCTGACGGGGCGGCGCGCCATGGAGCATGTCAGGGGGAGGAGCCTCCACGCCGACCAGGTGGTCAAGATCGTCGACTGGACCCGCCCCTACCTCGGCAGCAGCCGCCGCCTCCGCTGCATCATGGACCCGCGCCTCGCCGGCCACTACTCCGTCAAGGCCGCCCGCGCCGTCGCCCACCTCGCCGTCCAGTGCACCAGCCCGCAGCCGCGCGACCGCCCGCGCATGGCCGCCGTCGTCGACGCCCTCGAGCGCCTGCAGGGCTTCAAGGACATGGCCGTCACCGTCGGCCTCTGGCCCACCAACGCCCCCGTCGCCGGCAGGAACGCCATCTCCGCCAAGATCCGCGCCGAGGTCAGAGGCGCCGGCTCCGGCGGCGGCGCGGCCTCGCGGCGGCGGAGCGCCTCCGCCAAGCTGCCCTGATCGCCCGCGTGCGTTCGTGGGCGCGCCACGTCATCGCGAGTACGTATTTGTATACGTGTACGTGTGTGTATATACTTTAGCTGCTGTATAAGATGGCACGGCCGATGTATTGTACGTGGTGATCATCGAGCTTGATTGATTTTTTTTTAGCCATATGGATTATGGATTATTGCGGAATTAATACTGATCTGTATCACCATATGTACGTACTTAGTAGGAGTATTTAGTTTTAGGTGCCATGATGCTGGTAGATCATGCATGCATGTATGATGAATTGTACTTTCATCCACCGATTGCTGATTGCAAGTTCGTGCATCAGTAATCGGTCATTTCGATATTATCTTTTTTTTTCCTTG
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| CDS seq | ATGCCGCCGAGGCAGTGGAGGCCGATGCTGGCGTCGGCGACCAAGTGCTGCGCGGCGGAGGACGCGGTGGTGGCGGTGGATGGCAGCGGCGGCGGGGGCGGCCTCGCGCGGTGCAGGCCGGCGCGGTCCGAGTTCTCACGGAGGCTGGCGTCGTTCCGGAAGCTGTCGTCGATGACCAACAGCCCGGCGTCGTCCGTCGCGGGGGCGGCGGAGGGGGGGAAAGACGACGGCGAGGAGGGGGGCGGCGGCGGTGGCGGCGTGTCCGGCCCGCTGCAGCTCTACTCCTTCAGCTTCTCCGAGCTCCGGTCCATCACGCACGACTTCTCCAGCAGCTACCTGCTCGGGGAGGGCGGCTTCGGCGCCGTCCACAAGGGCTTCGTCGACGCCGGCATGCGCCCCGGCCTCCTGCCCCAGCCCGTCGCCGTCAAGCAGCTCGACATCGCCGGCCTCCAGGGCCACCGGGAGTGGCTGGCGGAGGTGATCTTCTTGGGGCAGTTCCGGCACCCGCACCTGGTGAAGCTGCTGGGCTACTGCTGCGAGGACGAGGAGCGCCTCCTCGTCTACGAGTTCATGCCGCGCGGCAGCCTCGAGAACCACCTCTTCAAGAGGATATCGGCGACGGTGCCGTGGGGCACGCGTCTGAAGATCGCCATCGGCGCCGCCAAGGGCCTCGCCTTCCTCCACGGCGCCTCCACCCCCGTCATCTACCGCGACTTCAAGGCCTCCAACATCCTCCTCGACTCGGAGTTCACGGCGAAGCTGTCGGACTTCGGGCTGGCGAAGATGGGGCCGGAGGGTTCGGAGACTCACGTGACGACGCGGGTGATGGGCACGCACGGGTACGCGGCGCCGGAGTACGTGATGACGGGGCACCTCAACATCAAGAGCGACGTGTACAGCTACGGCGTCGTGCTCCTGGAGCTCCTGACGGGGCGGCGCGCCATGGAGCATGTCAGGGGGAGGAGCCTCCACGCCGACCAGGTGGTCAAGATCGTCGACTGGACCCGCCCCTACCTCGGCAGCAGCCGCCGCCTCCGCTGCATCATGGACCCGCGCCTCGCCGGCCACTACTCCGTCAAGGCCGCCCGCGCCGTCGCCCACCTCGCCGTCCAGTGCACCAGCCCGCAGCCGCGCGACCGCCCGCGCATGGCCGCCGTCGTCGACGCCCTCGAGCGCCTGCAGGGCTTCAAGGACATGGCCGTCACCGTCGGCCTCTGGCCCACCAACGCCCCCGTCGCCGGCAGGAACGCCATCTCCGCCAAGATCCGCGCCGAGGTCAGAGGCGCCGGCTCCGGCGGCGGCGCGGCCTCGCGGCGGCGGAGCGCCTCCGCCAAGCTGCCCTGA
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| Protein seq | MPPRQWRPMLASATKCCAAEDAVVAVDGSGGGGGLARCRPARSEFSRRLASFRKLSSMTNSPASSVAGAAEGGKDDGEEGGGGGGGVSGPLQLYSFSFSELRSITHDFSSSYLLGEGGFGAVHKGFVDAGMRPGLLPQPVAVKQLDIAGLQGHREWLAEVIFLGQFRHPHLVKLLGYCCEDEERLLVYEFMPRGSLENHLFKRISATVPWGTRLKIAIGAAKGLAFLHGASTPVIYRDFKASNILLDSEFTAKLSDFGLAKMGPEGSETHVTTRVMGTHGYAAPEYVMTGHLNIKSDVYSYGVVLLELLTGRRAMEHVRGRSLHADQVVKIVDWTRPYLGSSRRLRCIMDPRLAGHYSVKAARAVAHLAVQCTSPQPRDRPRMAAVVDALERLQGFKDMAVTVGLWPTNAPVAGRNAISAKIRAEVRGAGSGGGAASRRRSASAKLP |
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| Function | Probable serine/threonine-protein kinase PBL15 [UniProtKB/Swiss-Prot:Q9SY91] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0364400 | OsNip_03t0364400-01 | Chr03 | 14206981 | 14209160 | + | RAP2018-11-26 | ||
| CDS seq | ATGCCGCCGAGGCAGTGGAGGCCGATGCTGGCGTCGGCGACCAAGTGCTGCGCGGCGGAGGACGCGGTGGTGGCGGTGGATGGCAGCGGCGGCGGGGGCGGCCTCGCGCGGTGCAGGCCGGCGCGGTCCGAGTTCTCACGGAGGCTGGCGTCGTTCCGGAAGCTGTCGTCGATGACCAACAGCCCGGCGTCGTCCGTCGCGGGGGCGGCGGAGGGGGGGAAAGACGACGGCGAGGAGGGGGGCGGCGGCGGTGGCGGCGTGTCCGGCCCGCTGCAGCTCTACTCCTTCAGCTTCTCCGAGCTCCGGTCCATCACGCACGACTTCTCCAGCAGCTACCTGCTCGGGGAGGGCGGCTTCGGCGCCGTCCACAAGGGCTTCGTCGACGCCGGCATGCGCCCCGGCCTCCTGCCCCAGCCCGTCGCCGTCAAGCAGCTCGACATCGCCGGCCTCCAGGGCCACCGGGAGTGGCTGGCGGAGGTGATCTTCTTGGGGCAGTTCCGGCACCCGCACCTGGTGAAGCTGCTGGGCTACTGCTGCGAGGACGAGGAGCGCCTCCTCGTCTACGAGTTCATGCCGCGCGGCAGCCTCGAGAACCACCTCTTCAAGAGGATATCGGCGACGGTGCCGTGGGGCACGCGTCTGAAGATCGCCATCGGCGCCGCCAAGGGCCTCGCCTTCCTCCACGGCGCCTCCACCCCCGTCATCTACCGCGACTTCAAGGCCTCCAACATCCTCCTCGACTCGGAGTTCACGGCGAAGCTGTCGGACTTCGGGCTGGCGAAGATGGGGCCGGAGGGTTCGGAGACTCACGTGACGACGCGGGTGATGGGCACGCACGGGTACGCGGCGCCGGAGTACGTGATGACGGGGCACCTCAACATCAAGAGCGACGTGTACAGCTACGGCGTCGTGCTCCTGGAGCTCCTGACGGGGCGGCGCGCCATGGAGCATGTCAGGGGGAGGAGCCTCCACGCCGACCAGGTGGTCAAGATCGTCGACTGGACCCGCCCCTACCTCGGCAGCAGCCGCCGCCTCCGCTGCATCATGGACCCGCGCCTCGCCGGCCACTACTCCGTCAAGGCCGCCCGCGCCGTCGCCCACCTCGCCGTCCAGTGCACCAGCCCGCAGCCGCGCGACCGCCCGCGCATGGCCGCCGTCGTCGACGCCCTCGAGCGCCTGCAGGGCTTCAAGGACATGGCCGTCACCGTCGGCCTCTGGCCCACCAACGCCCCCGTCGCCGGCAGGAACGCCATCTCCGCCAAGATCCGCGCCGAGGTCAGAGGCGCCGGCTCCGGCGGCGGCGCGGCCTCGCGGCGGCGGAGCGCCTCCGCCAAGCTGCCCTGA
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| Protein seq | MPPRQWRPMLASATKCCAAEDAVVAVDGSGGGGGLARCRPARSEFSRRLASFRKLSSMTNSPASSVAGAAEGGKDDGEEGGGGGGGVSGPLQLYSFSFSELRSITHDFSSSYLLGEGGFGAVHKGFVDAGMRPGLLPQPVAVKQLDIAGLQGHREWLAEVIFLGQFRHPHLVKLLGYCCEDEERLLVYEFMPRGSLENHLFKRISATVPWGTRLKIAIGAAKGLAFLHGASTPVIYRDFKASNILLDSEFTAKLSDFGLAKMGPEGSETHVTTRVMGTHGYAAPEYVMTGHLNIKSDVYSYGVVLLELLTGRRAMEHVRGRSLHADQVVKIVDWTRPYLGSSRRLRCIMDPRLAGHYSVKAARAVAHLAVQCTSPQPRDRPRMAAVVDALERLQGFKDMAVTVGLWPTNAPVAGRNAISAKIRAEVRGAGSGGGAASRRRSASAKLP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0364400 | OsNip_03t0364400-02 | Chr03 | 14207103 | 14209160 | + | RAP2018-11-26 | ||
| CDS seq | ATGCCGCCGAGGCAGTGGAGGCCGATGCTGGCGTCGGCGACCAAGTGCTGCGCGGCGGAGGACGCGGTGGTGGCGGTGGATGGCAGCGGCGGCGGGGGCGGCCTCGCGCGGTGCAGGCCGGCGCGGTCCGAGTTCTCACGGAGGCTGGCGTCGTTCCGGAAGCTGTCGTCGATGACCAACAGCCCGGCGTCGTCCGTCGCGGGGGCGGCGGAGGGGGGGAAAGACGACGGCGAGGAGGGGGGCGGCGGCGGTGGCGGCGTGTCCGGCCCGCTGCAGCTCTACTCCTTCAGCTTCTCCGAGCTCCGGTCCATCACGCACGACTTCTCCAGCAGCTACCTGCTCGGGGAGGGCGGCTTCGGCGCCGTCCACAAGGGCTTCGTCGACGCCGGCATGCGCCCCGGCCTCCTGCCCCAGCCCGTCGCCGTCAAGCAGCTCGACATCGCCGGCCTCCAGGGCCACCGGGAGTGGCTGGCGGAGGTGATCTTCTTGGGGCAGTTCCGGCACCCGCACCTGGTGAAGCTGCTGGGCTACTGCTGCGAGGACGAGGAGCGCCTCCTCGTCTACGAGTTCATGCCGCGCGGCAGCCTCGAGAACCACCTCTTCAAGAGGATATCGGCGACGGTGCCGTGGGGCACGCGTCTGAAGATCGCCATCGGCGCCGCCAAGGGCCTCGCCTTCCTCCACGGCGCCTCCACCCCCGTCATCTACCGCGACTTCAAGGCCTCCAACATCCTCCTCGACTCGGAGTTCACGGCGAAGCTGTCGGACTTCGGGCTGGCGAAGATGGGGCCGGAGGGTTCGGAGACTCACGTGACGACGCGGGTGATGGGCACGCACGGGTACGCGGCGCCGGAGTACGTGATGACGGGGCACCTCAACATCAAGAGCGACGTGTACAGCTACGGCGTCGTGCTCCTGGAGCTCCTGACGGGGCGGCGCGCCATGGAGCATGTCAGGGGGAGGAGCCTCCACGCCGACCAGGTGGTCAAGATCGTCGACTGGACCCGCCCCTACCTCGGCAGCAGCCGCCGCCTCCGCTGCATCATGGACCCGCGCCTCGCCGGCCACTACTCCGTCAAGGCCGCCCGCGCCGTCGCCCACCTCGCCGTCCAGTGCACCAGCCCGCAGCCGCGCGACCGCCCGCGCATGGCCGCCGTCGTCGACGCCCTCGAGCGCCTGCAGGGCTTCAAGGACATGGCCGTCACCGTCGGCCTCTGGCCCACCAACGCCCCCGTCGCCGGCAGGAACGCCATCTCCGCCAAGATCCGCGCCGAGGTCAGAGGCGCCGGCTCCGGCGGCGGCGCGGCCTCGCGGCGGCGGAGCGCCTCCGCCAAGCTGCCCTGA
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| Protein seq | MPPRQWRPMLASATKCCAAEDAVVAVDGSGGGGGLARCRPARSEFSRRLASFRKLSSMTNSPASSVAGAAEGGKDDGEEGGGGGGGVSGPLQLYSFSFSELRSITHDFSSSYLLGEGGFGAVHKGFVDAGMRPGLLPQPVAVKQLDIAGLQGHREWLAEVIFLGQFRHPHLVKLLGYCCEDEERLLVYEFMPRGSLENHLFKRISATVPWGTRLKIAIGAAKGLAFLHGASTPVIYRDFKASNILLDSEFTAKLSDFGLAKMGPEGSETHVTTRVMGTHGYAAPEYVMTGHLNIKSDVYSYGVVLLELLTGRRAMEHVRGRSLHADQVVKIVDWTRPYLGSSRRLRCIMDPRLAGHYSVKAARAVAHLAVQCTSPQPRDRPRMAAVVDALERLQGFKDMAVTVGLWPTNAPVAGRNAISAKIRAEVRGAGSGGGAASRRRSASAKLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.592127 | 4.385212 | 1.244733 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0613500 | SBH | 2.528249 | 2.707903 | 3.555501 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g24930 | RBH | 3.217376 | 3.010429 | 0.319742 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0364400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0018800 | RBH | 0.410521 | 1.398950 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0018620 | RBH | 0.558130 | 1.163860 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0018660 | RBH | 3.525549 | 2.408845 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0018700 | RBH | 0.514054 | 0.093878 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0018480 | RBH | 3.113705 | 0.000000 | 2.348145 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0236000 | RBH | 18.5585755 | 14.380643 | 0.02741 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0018310 | RBH | 0.579596 | 0.086795 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0237000 | RBH | 11.3127595 | 26.2604715 | 0.035137 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0018530 | RBH | 0.665661 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0018560 | RBH | 1.195319 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0018620 | RBH | 1.859756 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0018490 | RBH | 0.832144 | 0.289288 | 0.247494 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0018400 | RBH | 0.552687 | 2.251086 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G018420 | RBH | 2.805979 | 1.443877 | 0.695335 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0018350 | RBH | 4.852276 | 24.801352 | 1.274213 |
