Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0355200 | OGI:03036530 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:13570909-13574657 | ||||||||
| Gene Symbol | OsWD40-72 | ||||||||||
| DNA seq | CCCGCGACGCCTCCGCCTCCGTCTCCGTCGCCACCACCGCCTCCGCCTCCAAAACCCTAACCCTAGCTCGCCGCCTTCGCGCGAGCTCTCCTCCATGGAGAACCCCAGGCCACAGGCTCCTGCGGGGACCCCTCCCATGGCTCCCCTCCCCGTGCCCCCGCCCATCGCCCCCATCCCTGCCCCGCCTCCGCGAGCCCCAGCACCCGCCCCGGCCGCCGCCGCCGCCGTCGCCTCGACCTCCGCGGCGGGAGGAGGCGGCGGGGGCGGCGGTGAGGCTGACTACGAGGTCTCCGATGACCACCGCGCCGCGCGGGAGCGCCACGAGCGCGCGGTGCAGGAGCTGCTCCAGCGCCGCCGCGCCTTCGCCATGGCCGTGCCCACCAACGACTCCGCCGTGCGGGCGCGCCTCCGCCGCCTCGGCGAGCCCGTCACGCTCTTCGGCGAGCGCGAGATGGAGCGCCGGGACCGCCTCCGCGCTCTCATGGTCCGCCTCGAGGCCGACGGCCACCTCGACCGCCTCCTCCGCGCGCAGGAGGAGGAGCAGGGCGCCGCGGGCGCCGAAGAGGAGGAGGAGCAGATCCAGTACCCCTTCTTCACCGAGGGCACGCAGGAGCTTCTCAAGGCGCGCGTCGACATCGCGCAGTACTCGCTGCCCCGAGCCAAGGCCAGGATAGAGCGGGCCAAGCGCTGCCATGACGACCCCGACGAGGACCCTGAGGCAGAGGCCAACCTTGTCGTTAAGCAGGCGGAGGATTTCGTGCTTGAGTGCAGCGAGATTGGAGATGACCGCCCCCTCACCGGCTGCTCCTTCTCTCGAGATTTTTCAATGCTCGCTACAAGGTACGGCCACTTAATCAAACGGAATAGCGTAGGGTTTTATCTTTGTATGTCTTAAAATAGTGGAATGATTTGCTCGCCGAAGTGTTGCAATCGTCTTATTAGGTCAATTGTTAATATGGGTTTGGTAACTTGCTTAACTTGTCCCAGTTTAGCATATCAATTGAGTAAAAGCTGTTCTAAGTTTGGGATTGGCAATGACTGAAAACACTCTGAATTGCTGCTATATATGGCAGATGGCCGTGTTTCTTCACATTTACACTGCTGCTGCATAGAACCATGCTGTTCTGCTTCAGCATTTCTGTCATGATTGCTTTGCGTTGAACCAGGTGCAGCTAGCACTCGTTCAAAATTGCAATCACAATAGTTCATCATGGCGTGATATCGGCTGGATGAATCAACAAATTTTTTTATGGCTGTATGATTTATAGAACTAGCTAGCGGCTCATGTTTGGGCAGCTAGAATTTCCTTCCATTGAGCAGATGGAGGATGGTATCATGCTTATCGGCTAGCACTATTTTGAGCAGGCTGGTCTTCACATTTGCAGGATTGCCTGTAACAGAACTATTGCGGTGTTCCAAAATACACTAGGTGGGTGGCATGGTAGCATCTGGCTCCTTCTCGCATACAGGGTATCTTCACAATAGTGGAGTATCCCTGATGATTTTCAATTGTGATGCTAATTGAATTTCATAGGAGTTCATATACACATTGTTTTTGGAAGGGAAGTTCATGCACGCTTAGGCTGCATTTGCTTCAACATTTCATCAGATTGGCCAATTTCCTAACCTGAAAAGACACTCGATTAGATCATGATTAATTAAGTATTACCTATTATAAACTTGAAAATAGATTTATTTGAATTTTTAAATAAACTTCTATATAGAAAGTTTCTTTCAAAAATCACACCGTTTAGCGGCTTGGGAAGCGTGCCCGCGTTAATCTGGTGCTAGTAGCTGAAAAGAACATAGCCTTAGTAATTTTGGTAAACTAATTGTTGATGTCATGTTGTTGGATACCTTTTTCCTTAATCTTGAGCCTCAATTAGCTTATGTTCTCTTGTTCTTGGCCTTAACTTATGTTTTCTTGTTCTTGCTTCCTTGTCAGTAAATAATGACTTTATTTCTGTGTTTTTTAGTTCATGGAGTGGGATGATCAAAGTGTGGAGTATGCCACAAGTAACTAAAATTGCAACTCTGAAAGGTCACACAGAACGTGCAACTGATGTTGCGTTTTCACCAGTTGACGACTGCTTAGCAACAGCTTCAGCTGATAAAACTGCCAAACTATGGAAGACCGATGGGTCACTCTTATTGTCCTTTGATGGTCACCTCGATCGGCTTGCTCGCCTTGCTTTTCATCCATCTGGAGGGTACCTTGCTACAGCTAGCTTTGACAAAACCTGGAGATTGTGGGACGTTAGCACTGGAAAGGAACTTCTACTCCAAGAAGGGCACAGCAGAAGTGTCTATGGAGTTAGCTTTCACCCAGATGGTTCTTTAGCTGCATCTTGTGGTCTTGATGCGTATGCTCGAGTTTGGGATTTAAGATCAGGAAGATTGTGGGGCACACTCATGGGACATGTGAAGCCTGTAAGTTCATAGCATCAATTTTCCAATCTTTTTCTAAAGTACTGTACCATTCATTTCAAGCTGTTACGGCTCTTTATTGCTTGGTTTGTGGTTACATTTATTTAGTTGTGGACATGCTATTGCTTTTTTATATTGTAACATGATTTTACTTTCTTTTCAGGTCTTAGGAGTGAGCTTCTCCCCTAATGGTTATCTGGTTGCAACTGGAAGTGAAGACAATTTCTGTCGAATATGGGATTTGAGGACTAAAAGAATGTTATATTCTATACCAGCACATAAGAGTCTTATCTCACATGTCAAGTTTGAACCCCAGGAAGGCTATTATTTGGCAACTTCGTCCTATGACACCAAAGCAGCAGTATGCCTAATAATAATGCGCCATTTATTTTATTTCTTTTATTGTCTCATTTCTGATATTCTTCCTTCCTTTTGCAGCTGTGGTCAGCTCGTGATTACAAACCAATCAAGAGTTTGGTGGCCCATGAGTCAAAGGTTACTAGTTTGGATATTAGTGGAGGTAACCACTTGCTTAAGTGCCTTTTATCTTTGCTGTATGTGAAATTATATTTGGATATCCTTTTCTTGTGAGAATTGAGATCAATAGTTTTAGCCCTTTTTATCTGTCCATTCCTCATATCAAGTTGGACATCCACCATTTGGTTATGCTAAAACAAATTCCCATGTATAGTGCACTTGGATTTTCTTAGCCAATATCAACACTCTCATCTCTGAACTAACTGCAGTTGTTAGAGCAGTGATGCTGCTAAAAACGGTTCAAACCAAACCTATTTGTCTGTATTACTTTTAGAACCTTATAGATCTATGCTATTCTATGGTGCACTTTCATCGTATAAAATTGCATATCATGCATTTCCCACCATTTGTTTGTTTGTCCTTAATGGCATACCCATCTTGTTTCTTTAATCCTTTGTTGAAAATGGTATCTGCCAGTTGTACGTTCTGATTGTTCTTTCCATCTCTATTCTCCCTCAACTTGTTTCTTGCAAAATGTATCAGCTTTTGATCCTTATTCCTAACAGATGCCCTAGTAAACTCTAGGGATCGGTACATTAGGTGGCGTTGTTGTCTCATTCTTCATTTTCCTTTTCAAGATTGTGCCGTATTATCATGCCATCCACTTGCCACAAGATTCAAACATGTCATATCTGAATTTCTAATTGGTGGTTTGTGTAAATCTTGTGCAGATGGACAGCAGATTGTGACTGTGTCACATGATAGAACGATCAAGATTTGGTCCTGCAGAAGCAGGGCACAAGATAATGCCATGGAGCTGGACTGAGGCACTGAATTAACTTGTT
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| CDS seq | ATGGAGAACCCCAGGCCACAGGCTCCTGCGGGGACCCCTCCCATGGCTCCCCTCCCCGTGCCCCCGCCCATCGCCCCCATCCCTGCCCCGCCTCCGCGAGCCCCAGCACCCGCCCCGGCCGCCGCCGCCGCCGTCGCCTCGACCTCCGCGGCGGGAGGAGGCGGCGGGGGCGGCGGTGAGGCTGACTACGAGGTCTCCGATGACCACCGCGCCGCGCGGGAGCGCCACGAGCGCGCGGTGCAGGAGCTGCTCCAGCGCCGCCGCGCCTTCGCCATGGCCGTGCCCACCAACGACTCCGCCGTGCGGGCGCGCCTCCGCCGCCTCGGCGAGCCCGTCACGCTCTTCGGCGAGCGCGAGATGGAGCGCCGGGACCGCCTCCGCGCTCTCATGGTCCGCCTCGAGGCCGACGGCCACCTCGACCGCCTCCTCCGCGCGCAGGAGGAGGAGCAGGGCGCCGCGGGCGCCGAAGAGGAGGAGGAGCAGATCCAGTACCCCTTCTTCACCGAGGGCACGCAGGAGCTTCTCAAGGCGCGCGTCGACATCGCGCAGTACTCGCTGCCCCGAGCCAAGGCCAGGATAGAGCGGGCCAAGCGCTGCCATGACGACCCCGACGAGGACCCTGAGGCAGAGGCCAACCTTGTCGTTAAGCAGGCGGAGGATTTCGTGCTTGAGTGCAGCGAGATTGGAGATGACCGCCCCCTCACCGGCTGCTCCTTCTCTCGAGATTTTTCAATGCTCGCTACAAGTTCATGGAGTGGGATGATCAAAGTGTGGAGTATGCCACAAGTAACTAAAATTGCAACTCTGAAAGGTCACACAGAACGTGCAACTGATGTTGCGTTTTCACCAGTTGACGACTGCTTAGCAACAGCTTCAGCTGATAAAACTGCCAAACTATGGAAGACCGATGGGTCACTCTTATTGTCCTTTGATGGTCACCTCGATCGGCTTGCTCGCCTTGCTTTTCATCCATCTGGAGGGTACCTTGCTACAGCTAGCTTTGACAAAACCTGGAGATTGTGGGACGTTAGCACTGGAAAGGAACTTCTACTCCAAGAAGGGCACAGCAGAAGTGTCTATGGAGTTAGCTTTCACCCAGATGGTTCTTTAGCTGCATCTTGTGGTCTTGATGCGTATGCTCGAGTTTGGGATTTAAGATCAGGAAGATTGTGGGGCACACTCATGGGACATGTGAAGCCTGTCTTAGGAGTGAGCTTCTCCCCTAATGGTTATCTGGTTGCAACTGGAAGTGAAGACAATTTCTGTCGAATATGGGATTTGAGGACTAAAAGAATGTTATATTCTATACCAGCACATAAGAGTCTTATCTCACATGTCAAGTTTGAACCCCAGGAAGGCTATTATTTGGCAACTTCGTCCTATGACACCAAAGCAGCACTGTGGTCAGCTCGTGATTACAAACCAATCAAGAGTTTGGTGGCCCATGAGTCAAAGGTTACTAGTTTGGATATTAGTGGAGATGGACAGCAGATTGTGACTGTGTCACATGATAGAACGATCAAGATTTGGTCCTGCAGAAGCAGGGCACAAGATAATGCCATGGAGCTGGACTGA
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| Protein seq | MENPRPQAPAGTPPMAPLPVPPPIAPIPAPPPRAPAPAPAAAAAVASTSAAGGGGGGGGEADYEVSDDHRAARERHERAVQELLQRRRAFAMAVPTNDSAVRARLRRLGEPVTLFGEREMERRDRLRALMVRLEADGHLDRLLRAQEEEQGAAGAEEEEEQIQYPFFTEGTQELLKARVDIAQYSLPRAKARIERAKRCHDDPDEDPEAEANLVVKQAEDFVLECSEIGDDRPLTGCSFSRDFSMLATSSWSGMIKVWSMPQVTKIATLKGHTERATDVAFSPVDDCLATASADKTAKLWKTDGSLLLSFDGHLDRLARLAFHPSGGYLATASFDKTWRLWDVSTGKELLLQEGHSRSVYGVSFHPDGSLAASCGLDAYARVWDLRSGRLWGTLMGHVKPVLGVSFSPNGYLVATGSEDNFCRIWDLRTKRMLYSIPAHKSLISHVKFEPQEGYYLATSSYDTKAALWSARDYKPIKSLVAHESKVTSLDISGDGQQIVTVSHDRTIKIWSCRSRAQDNAMELD |
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| Function | U4/U6 small nuclear ribonucleoprotein PRP4-like protein [UniProtKB/Swiss-Prot:O22212] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0355200 | OsNip_03t0355200-00 | Chr03 | 13570909 | 13574657 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGAACCCCAGGCCACAGGCTCCTGCGGGGACCCCTCCCATGGCTCCCCTCCCCGTGCCCCCGCCCATCGCCCCCATCCCTGCCCCGCCTCCGCGAGCCCCAGCACCCGCCCCGGCCGCCGCCGCCGCCGTCGCCTCGACCTCCGCGGCGGGAGGAGGCGGCGGGGGCGGCGGTGAGGCTGACTACGAGGTCTCCGATGACCACCGCGCCGCGCGGGAGCGCCACGAGCGCGCGGTGCAGGAGCTGCTCCAGCGCCGCCGCGCCTTCGCCATGGCCGTGCCCACCAACGACTCCGCCGTGCGGGCGCGCCTCCGCCGCCTCGGCGAGCCCGTCACGCTCTTCGGCGAGCGCGAGATGGAGCGCCGGGACCGCCTCCGCGCTCTCATGGTCCGCCTCGAGGCCGACGGCCACCTCGACCGCCTCCTCCGCGCGCAGGAGGAGGAGCAGGGCGCCGCGGGCGCCGAAGAGGAGGAGGAGCAGATCCAGTACCCCTTCTTCACCGAGGGCACGCAGGAGCTTCTCAAGGCGCGCGTCGACATCGCGCAGTACTCGCTGCCCCGAGCCAAGGCCAGGATAGAGCGGGCCAAGCGCTGCCATGACGACCCCGACGAGGACCCTGAGGCAGAGGCCAACCTTGTCGTTAAGCAGGCGGAGGATTTCGTGCTTGAGTGCAGCGAGATTGGAGATGACCGCCCCCTCACCGGCTGCTCCTTCTCTCGAGATTTTTCAATGCTCGCTACAAGTTCATGGAGTGGGATGATCAAAGTGTGGAGTATGCCACAAGTAACTAAAATTGCAACTCTGAAAGGTCACACAGAACGTGCAACTGATGTTGCGTTTTCACCAGTTGACGACTGCTTAGCAACAGCTTCAGCTGATAAAACTGCCAAACTATGGAAGACCGATGGGTCACTCTTATTGTCCTTTGATGGTCACCTCGATCGGCTTGCTCGCCTTGCTTTTCATCCATCTGGAGGGTACCTTGCTACAGCTAGCTTTGACAAAACCTGGAGATTGTGGGACGTTAGCACTGGAAAGGAACTTCTACTCCAAGAAGGGCACAGCAGAAGTGTCTATGGAGTTAGCTTTCACCCAGATGGTTCTTTAGCTGCATCTTGTGGTCTTGATGCGTATGCTCGAGTTTGGGATTTAAGATCAGGAAGATTGTGGGGCACACTCATGGGACATGTGAAGCCTGTCTTAGGAGTGAGCTTCTCCCCTAATGGTTATCTGGTTGCAACTGGAAGTGAAGACAATTTCTGTCGAATATGGGATTTGAGGACTAAAAGAATGTTATATTCTATACCAGCACATAAGAGTCTTATCTCACATGTCAAGTTTGAACCCCAGGAAGGCTATTATTTGGCAACTTCGTCCTATGACACCAAAGCAGCACTGTGGTCAGCTCGTGATTACAAACCAATCAAGAGTTTGGTGGCCCATGAGTCAAAGGTTACTAGTTTGGATATTAGTGGAGATGGACAGCAGATTGTGACTGTGTCACATGATAGAACGATCAAGATTTGGTCCTGCAGAAGCAGGGCACAAGATAATGCCATGGAGCTGGACTGA
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| Protein seq | MENPRPQAPAGTPPMAPLPVPPPIAPIPAPPPRAPAPAPAAAAAVASTSAAGGGGGGGGEADYEVSDDHRAARERHERAVQELLQRRRAFAMAVPTNDSAVRARLRRLGEPVTLFGEREMERRDRLRALMVRLEADGHLDRLLRAQEEEQGAAGAEEEEEQIQYPFFTEGTQELLKARVDIAQYSLPRAKARIERAKRCHDDPDEDPEAEANLVVKQAEDFVLECSEIGDDRPLTGCSFSRDFSMLATSSWSGMIKVWSMPQVTKIATLKGHTERATDVAFSPVDDCLATASADKTAKLWKTDGSLLLSFDGHLDRLARLAFHPSGGYLATASFDKTWRLWDVSTGKELLLQEGHSRSVYGVSFHPDGSLAASCGLDAYARVWDLRSGRLWGTLMGHVKPVLGVSFSPNGYLVATGSEDNFCRIWDLRTKRMLYSIPAHKSLISHVKFEPQEGYYLATSSYDTKAALWSARDYKPIKSLVAHESKVTSLDISGDGQQIVTVSHDRTIKIWSCRSRAQDNAMELD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.887198 | 1.532382 | 2.976700 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0657200 | SBH | 11.396201 | 10.557129 | 30.719021 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g23935 | SBH | 1.068415 | 1.427473 | 0.825266 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0355200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0018000 | SBH | 0.000000 | 4.819708 | 2.405679 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0017830 | SBH | 0.104858 | 1.123899 | 1.633842 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0017850 | RBH | 0.745104 | 0.000000 | 4.389910 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0017860 | RBH | 0.082258 | 0.252289 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0017660 | RBH | 0.000000 | 10.042198 | 10.069296 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0226500 | RBH | 4.152139 | 8.5153255 | 13.145478 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0017510 | SBH | 0.075250 | 0.332823 | 0.747221 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0226500 | RBH | 5.391069 | 11.3328995 | 13.6757665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0017760 | SBH | 0.176807 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0017760 | RBH | 0.383249 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0017830 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0017700 | RBH | 0.000000 | 0.739294 | 0.567851 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0017610 | SBH | 0.425854 | 4.014133 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G017600 | RBH | 0.451259 | 0.000000 | 2.109925 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0017560 | SBH | 1.538143 | 15.510764 | 4.416437 |
