Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0327800 | OGI:03032070 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:11973989-11976381 | ||||||||
| Gene Symbol | NAC58, OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1 | ||||||||||
| DNA seq | GCCATTAAAGAATCACTTATTGATTGATTTACATGAATATGAGCTATAAATCCGGCTTTATGATCTTGACATCATTCTCCTTGATCTCATGTTCCAGACTTCTAGTGGGTCTATCTCAAAGTCTTATCAACCCCTATCTAGCTTAATTAATCTTTAGTACTGAGCTAGCTTGAGTACACAGTAGTATAGTACCATGAGAAAAAATGTATACACACCACAAACTATATAGCTATGCATGATCGGACGACCTAGCTAGTCCACACAAGTACAAATTAAGTACAATTTCTTTCCCAATATATTTACTATTTAAATCTATCGTTTTGGACCTATTTGCTTTCGAAATAGACCTCACTGTTCAAATCATCAATTCGCCATGTGCAATTATGTTCAGTGTTTAATCAGGCTGTGGTATTATGTACGAAGAACGAGCTATCAGTTCATCCCCATGTTAGAGTGGAGCAGCATCTGGTGGCTCAGTCCCAGTGACGATCCCTGCAAGGCGCTGCCTATTTGGAAAGTTGCACCAACGCATGAACCGTTCGGCTTCTTGGCCGCCGCGGCAGCAGGAGGCAGCGCCTGGATCGTCGGCTCGCCTCCGTCCGATGATCTCTTGCGCTTCCCGGTGACGGCCGGCGGCTCGACGACGGCGCCTGCCGACGTCGAGGCGGCCGCAGAGGAGGACGGGTCCAGGTGCGCGAGCTGAACCATGCTGTTGTTCGCGATGAAATGGTTCATGACGGGGTGGCCAAAGAGGGCGTGTTGTTGTTGTTGGTGGTGGTGGTGGTCGGGCTGCCTCGCCATCTCCTGCAGGGGGGCGGCGGCGGCGGCGCCGCCGTCGTCGAAGAGCTGCGACAGCGAGTACTCGTTGAGCAGGTCGGAAATGGAAGGGATCTTCTGCATCGCCGTCCTCTGCGTAGCGGCGGCGGCGGCGTGCAGCGACGGGAAGGCGCCGGCGGCAGCGCCCTGCAAGATCATGGATGCGGCGCTCGACGACGACGGCGCGTACAGCGGCGCGTTCTCCTCCAGGGCGCACGGCTCGTCCTGCTCGTGGTCGGAGAGCGGCGGCACGGCCAGCGGCGACGCGTGGCTGCTCTTCTTGTAGATCCGGCACAGCACCCAGTCATCCAGCTGCACAAAAATCCACGCACATCGATCGATCAATCACACGGATGCATATACTATATGATTAAGAAATTAAGAGTATCAAAAATAGAAGGGATTAATTTCAGGGGGTATGCATGCGCGCATATGCAGAGATGAACCAGTCATCAACACGTACGCATCGTGGCTATCATTGTCGGATCTATTGACTTGCGCAACCATGCCAAGTATTGCCTAAAGAACACCCTCTTTAAAACAGACACACTAAAAGCAGCGAGTTGCGTCCATTGGCAAGGCACAAACCGATGCGATAATACTGACGTGCCGACGAACACGTATCGATCATCAGAAACAACCACCCAAAAAAACCACGGTGTGCAACTGTGCAAGTGCACTAGCACATCAGACAGAGATGAATAATAGACGATCTACTCTCTACTCCATCGATAGCAAGATCCAGCTGCTAGGGTTTGTTCATAATTAAGTTGTTTGGTTTAGATAATTTGAATCTGGCTGCTAGGTAACGTAGATGGAGCTTGCTTACCCTCATGGAGGTGTTGCGGAACTTCATGGGGCGGTAGGTGTTGGCGGCGTGGGCGTCTGCGGCGGCGAGGCGGTACTCGTGCATGATCCAGTTGGTCTTGGTGCCCTTGGGCGGGCGGCCCTTGTAGAAGACGAGCGCCTTCTTGACGCCGACGCTCTCGTTGGTCGCCGCGCCGCCGCTGCTGTGGATGGGCTTGTCGGTGCCGGTGGCCTTCCAGTAGCCGGAGCCCGCGGCGCGGTTCGGCCGGATCCCGTTCGGGTACTTGCGGTCCCTCGGGCTGAAGAAGTACCACTCCCTGTCCCCGTAATTCTCCTTGGCTGATGCAAATCAAAACACAAGTCGATCACCAACGAAATTAATTGCAAATCAGTGATCGATCGATCGCGGCGAGCTGTGAGGGTGGGTACTAACATGGGAGGTCCCACGGATCGAACTTGTAGATGTCGACGTCGGCGATGATGGAGACGGGGCACGGCGAGGAGGCGGCCCGGTTGCGGAGGTAGTGCACGATCAGCTCCTCGTCCGTCGGGTGGAACCGGAACCCCGGCGGCAGCATCGCCGGGTTCGACAGAACCATCGTCTCCGGCAGTCACCCACACACAACACACACCTCCCTGCACAAGCAAAACCTATCTAGCTATAGCTGCTCACTTCCAAGATCAAGCCACTCGATCCCCTCTCAGCTATGATCTATGAGATCTATCAGGGTCGAGCTTGTATCAAGAGGAGGCGAGAGATGGAGGAGGGC
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| CDS seq | ATGGTTCTGTCGAACCCGGCGATGCTGCCGCCGGGGTTCCGGTTCCACCCGACGGACGAGGAGCTGATCGTGCACTACCTCCGCAACCGGGCCGCCTCCTCGCCGTGCCCCGTCTCCATCATCGCCGACGTCGACATCTACAAGTTCGATCCGTGGGACCTCCCATCCAAGGAGAATTACGGGGACAGGGAGTGGTACTTCTTCAGCCCGAGGGACCGCAAGTACCCGAACGGGATCCGGCCGAACCGCGCCGCGGGCTCCGGCTACTGGAAGGCCACCGGCACCGACAAGCCCATCCACAGCAGCGGCGGCGCGGCGACCAACGAGAGCGTCGGCGTCAAGAAGGCGCTCGTCTTCTACAAGGGCCGCCCGCCCAAGGGCACCAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGCCGCAGACGCCCACGCCGCCAACACCTACCGCCCCATGAAGTTCCGCAACACCTCCATGAGGCTGGATGACTGGGTGCTGTGCCGGATCTACAAGAAGAGCAGCCACGCGTCGCCGCTGGCCGTGCCGCCGCTCTCCGACCACGAGCAGGACGAGCCGTGCGCCCTGGAGGAGAACGCGCCGCTGTACGCGCCGTCGTCGTCGAGCGCCGCATCCATGATCTTGCAGGGCGCTGCCGCCGGCGCCTTCCCGTCGCTGCACGCCGCCGCCGCCGCTACGCAGAGGACGGCGATGCAGAAGATCCCTTCCATTTCCGACCTGCTCAACGAGTACTCGCTGTCGCAGCTCTTCGACGACGGCGGCGCCGCCGCCGCCGCCCCCCTGCAGGAGATGGCGAGGCAGCCCGACCACCACCACCACCAACAACAACAACACGCCCTCTTTGGCCACCCCGTCATGAACCATTTCATCGCGAACAACAGCATGGTTCAGCTCGCGCACCTGGACCCGTCCTCCTCTGCGGCCGCCTCGACGTCGGCAGGCGCCGTCGTCGAGCCGCCGGCCGTCACCGGGAAGCGCAAGAGATCATCGGACGGAGGCGAGCCGACGATCCAGGCGCTGCCTCCTGCTGCCGCGGCGGCCAAGAAGCCGAACGGTTCATGCGTTGGTGCAACTTTCCAAATAGGCAGCGCCTTGCAGGGATCGTCACTGGGACTGAGCCACCAGATGCTGCTCCACTCTAACATGGGGATGAACTGA
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| Protein seq | MVLSNPAMLPPGFRFHPTDEELIVHYLRNRAASSPCPVSIIADVDIYKFDPWDLPSKENYGDREWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHSSGGAATNESVGVKKALVFYKGRPPKGTKTNWIMHEYRLAAADAHAANTYRPMKFRNTSMRLDDWVLCRIYKKSSHASPLAVPPLSDHEQDEPCALEENAPLYAPSSSSAASMILQGAAAGAFPSLHAAAAATQRTAMQKIPSISDLLNEYSLSQLFDDGGAAAAAPLQEMARQPDHHHHQQQQHALFGHPVMNHFIANNSMVQLAHLDPSSSAAASTSAGAVVEPPAVTGKRKRSSDGGEPTIQALPPAAAAAKKPNGSCVGATFQIGSALQGSSLGLSHQMLLHSNMGMN |
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| Function | NAC domain-containing protein 10 [UniProtKB/Swiss-Prot:Q8H4S4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0327800 | OsNip_03t0327800-01 | Chr03 | 11973989 | 11976381 | - | RAP2018-11-26 | ||
| CDS seq | ATGGTTCTGTCGAACCCGGCGATGCTGCCGCCGGGGTTCCGGTTCCACCCGACGGACGAGGAGCTGATCGTGCACTACCTCCGCAACCGGGCCGCCTCCTCGCCGTGCCCCGTCTCCATCATCGCCGACGTCGACATCTACAAGTTCGATCCGTGGGACCTCCCATCCAAGGAGAATTACGGGGACAGGGAGTGGTACTTCTTCAGCCCGAGGGACCGCAAGTACCCGAACGGGATCCGGCCGAACCGCGCCGCGGGCTCCGGCTACTGGAAGGCCACCGGCACCGACAAGCCCATCCACAGCAGCGGCGGCGCGGCGACCAACGAGAGCGTCGGCGTCAAGAAGGCGCTCGTCTTCTACAAGGGCCGCCCGCCCAAGGGCACCAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGCCGCAGACGCCCACGCCGCCAACACCTACCGCCCCATGAAGTTCCGCAACACCTCCATGAGGCTGGATGACTGGGTGCTGTGCCGGATCTACAAGAAGAGCAGCCACGCGTCGCCGCTGGCCGTGCCGCCGCTCTCCGACCACGAGCAGGACGAGCCGTGCGCCCTGGAGGAGAACGCGCCGCTGTACGCGCCGTCGTCGTCGAGCGCCGCATCCATGATCTTGCAGGGCGCTGCCGCCGGCGCCTTCCCGTCGCTGCACGCCGCCGCCGCCGCTACGCAGAGGACGGCGATGCAGAAGATCCCTTCCATTTCCGACCTGCTCAACGAGTACTCGCTGTCGCAGCTCTTCGACGACGGCGGCGCCGCCGCCGCCGCCCCCCTGCAGGAGATGGCGAGGCAGCCCGACCACCACCACCACCAACAACAACAACACGCCCTCTTTGGCCACCCCGTCATGAACCATTTCATCGCGAACAACAGCATGGTTCAGCTCGCGCACCTGGACCCGTCCTCCTCTGCGGCCGCCTCGACGTCGGCAGGCGCCGTCGTCGAGCCGCCGGCCGTCACCGGGAAGCGCAAGAGATCATCGGACGGAGGCGAGCCGACGATCCAGGCGCTGCCTCCTGCTGCCGCGGCGGCCAAGAAGCCGAACGGTTCATGCGTTGGTGCAACTTTCCAAATAGGCAGCGCCTTGCAGGGATCGTCACTGGGACTGAGCCACCAGATGCTGCTCCACTCTAACATGGGGATGAACTGA
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| Protein seq | MVLSNPAMLPPGFRFHPTDEELIVHYLRNRAASSPCPVSIIADVDIYKFDPWDLPSKENYGDREWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHSSGGAATNESVGVKKALVFYKGRPPKGTKTNWIMHEYRLAAADAHAANTYRPMKFRNTSMRLDDWVLCRIYKKSSHASPLAVPPLSDHEQDEPCALEENAPLYAPSSSSAASMILQGAAAGAFPSLHAAAAATQRTAMQKIPSISDLLNEYSLSQLFDDGGAAAAAPLQEMARQPDHHHHQQQQHALFGHPVMNHFIANNSMVQLAHLDPSSSAAASTSAGAVVEPPAVTGKRKRSSDGGEPTIQALPPAAAAAKKPNGSCVGATFQIGSALQGSSLGLSHQMLLHSNMGMN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.819573 | 0.757876 | 3.031461 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0683200 | RBH | 0.517881 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g21060 | RBH | 0.536629 | 0.492062 | 0.753303 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0327800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0016310 | RBH | 0.838517 | 2.846134 | 3.311548 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0016150 | RBH | 0.0 | 0.449680 | 1.072435 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0016170 | RBH | 2.059231 | 0.0 | 3.384973 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0016160 | RBH | 0.300749 | 0.063940 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0015960 | RBH | 2.810650 | 0.000000 | 8.129747 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0199100 | RBH | 1.9510595 | 2.848943 | 0.415756 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0015840 | RBH | 0.0 | 0.124359 | 0.280488 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0203300 | RBH | 3.3826415 | 11.760572 | 0.0263975 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0016100 | RBH | 0.105455 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0016110 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0016140 | RBH | 1.272594 | 2.848290 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0016030 | RBH | 0.689082 | 0.248929 | 0.468112 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0015960 | RBH | 0.191766 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G015910 | RBH | 1.292235 | 0.000000 | 2.541326 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0015810 | RBH | 1.824810 | 8.570045 | 2.498874 |
