Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0314400 | OGI:03030220 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:11252342-11255305 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCCCCGCGGGCTCTCGTCCCAACCGCTCACCGGCTTCCCGCGGCGGCGGCGGCGGGGCTCCATGCTCACGGTGACCCTCCTGGACGCGCACCTCGCGCGGTGCAGCTCGGCGCGCCACCTCCTCCAGATCCACGCCCAGTTCGTCGCGTCCGGTCTCCTCGCCGACGCCTTCGCCGCCAGCCGCCTCATCCTCTTCACCACCTCCACCCGCCTCCTCCCGCTCCCGTTCCACCACTCGCTCCGCCTCCTCCACGTCGTCCACCGCCCCAACGCCTTCTCCTGCAACATGGTCCTCAAGGCGGCCCGCGAGCATGGGCTGCCGCACCTGTGCCTCCCGCTCTACGCGTCCATGTCCGCGGCCCCCGACTGCTACACCCATACCATCCTCGCCGCCGCCTGCGCCACCAGGAGGGCCATCGAAGAAGGCCGCCAGGTGCACTGCCACGCCGTCAGGCACGGGTTCGGGCGCAACCTGTACCTCGCGAACGCGCTGATGAGTATGTACTCCGCGTGTGGGTGCCTCGGCGACGCGCGCAAGGTGTTCGACGCGGGTCCTGTTTGGGACGCCGTTTCTTGGAACACGATCCTGGCCGCGTACGTGCAGGCTGAGGATGTGGACCAGGCGGTTGGGGTGTTTGCACGGATGCCTGAACGGGGTGCTGCGGCGGTGAGTTCGATGGTGTCGCTGTTTGGGAGGAGAGGAATGGTGGACGAGGCGAGGAAGGTGTTTGATGTGGTGGAGCGCAAGGATGTTTTCACGTGGACTGCGATGATTTCTTGCTTTCAGCGGAATGGCAAGTTTGCAGAGGCGTTGGCTTTGTTCTCAGATATGCGTGGGGAGGGGTGGCCTGTGGATGAGGCAGTCATGGTCTGTGTTGTCGCTGCCTGTGCACGGTTGGAGGTAACTCGGAATGGGGAGATGTGTCATGGGCTGGCTTTCAGAGCTGGCCTTGGCTCGAGGTTGAACGTCCAGAACGCATTGATCCACATGTACTCAAGTTTTCTGAATGTTGTTGCGGCACGAAGATTGTTTGACAGTGGCCAGTGTTTGGACCAGTTCTCTTGGAACTCGATGATAGCTGGCTATCTTAAGAATGGCTCTGTCAAGGATGCAAAGGAATTGTTCACTGTAATGCCTGACAAAGATAATGTTTCTTGGACTACAATGATATCTGGTTGTGTGCAAAATGACCAGTCCTCAGAGGCACTCACTATTTTCAACAACATGCAAGCCCAAGGAATCAAGCCAGATGAGGTTACGCTTGTAAGCGTCATCTCTGCATGTACTAATATGTCTTCTCTCGAGCAAGGCAAGTCAATGCATGAGTACATAAGGGAACACCAATATACCATCACAGTCATACTTGGGACTAGCCTCATTGACATGTACATGAAGTGTGGGTGCTTAGAATCTGCATTAGAAGTCTTCGATACAATGGAAGAAAGAGGAACACCTTGCTGGAATGCTGTCATTGTGGGGCTGGCCATGAATGGTCTGGTGATGAAGTCCCTTGACATGTTTTCGGAGATGGAATCATCTAGCACTGCCACTCCAAATGAGATAACTTTCACTGGAGTTTTGAGTGCTTGCAGACATGCTGGCCTAGTTGAGGAGGGCCAACATTTCTTCAAGTTGATGCAGCACAAGTATCACATTATCCCAAACATCAGACATTATGGATGCATGGTGGATCTTCTTGGACGTGCTGGATATGTCAAAGAGGCAGAGAATCTGATTGAGAGCATGCCCATGTCACCAGATGTTCCAGCATGGGGTGCTTTGCTTGGTTCCTGCTGGAAACATGGTGATAATGAGGTTGGAGAAAGGGTGGGGAGGAAGCTTGTCAATCTAGATCCTCACCATGACGGGTTCCACACTATGCTATCTAACATATATGCTTCAGAAGGAATGTGGCAACATGTAAAGGACCTAAGGGGCTCCATGAAACAATGGCATGTCCCAAAAATTCCTGGTTCTAGTGTGGTTGAATCATCACTACCTTTGTGAGAATATATCATATGATGGTACTTGAAATCAGAATACAGTGCTTAGAGTGGTTTGACTCAAGTTTCATAAGGTACTGAGCCGATCCTTAATTCCTTATCAGCAGAACTAGTGTTCTAGCTATCTTATGAGTTGCTTTGGTAGCTTGTCATTCAAATAATCTTTCTTCTGTCTATTTTTTCACATGTTTTTAGATAATGTATATTTTTCACATAAGCTAAAAGTTTTTGTCTGCCATTAATTTTCACAACATTCATCTTTTGATCATTCACCTGAAGTCAGATATAACCTCAGTCGCTCCCTCCTCATTTCTGCAAAGGTAACATCCATCCATCTGGCACCATGAATAAGTAGCCACCCACTACATGGTCATGACTCCTTTTTTGCATTTAGCCATGCATAATGGTGCTTATGTATTATTTATTTATTAATTTGTAATCTATGGTGAATTCAATCTATGATGGGGACTAATACTTCTGCATTATTGAAGGCATGGAGCACATGAGAGTGAGGGTGGTCTACTTCACCAAATTAAGGAGAGTAACTGTCTGTTTATATGAATATATCAGGGAGCTTGGTGAAGGGAGGAGGGAAGAATAAGGAAGCAAGGATGGCCTGTTATTTATAGTTAGCAGATGACAGATTAACGCAGGCAGACTACCCAAGCTCCTAAATGGTACGATTTTTGCAAAAAACTTTCTTCATCAACATTTCTTAGATAACTTGTTTAAATCAACTTCCAATATTTAATTATGCCCTCGAATAATTGTCATGAACTCTGTGTCATCCATCACCCATCATCTATTTAGGGTGGGATCTTAAGGGGTGCAATAAGCTTGCAACCTTTATTGGTATGTTTAGCTTTGTCGTTGGAAGTTTTGAAGTTGGGACAACATGTTATCACACTTATTGCACTGGAAAACAATAAAGAGAAGATCTGTAGATGTTTTTTTTTCCAT
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| CDS seq | ATGCTCACGGTGACCCTCCTGGACGCGCACCTCGCGCGGTGCAGCTCGGCGCGCCACCTCCTCCAGATCCACGCCCAGTTCGTCGCGTCCGGTCTCCTCGCCGACGCCTTCGCCGCCAGCCGCCTCATCCTCTTCACCACCTCCACCCGCCTCCTCCCGCTCCCGTTCCACCACTCGCTCCGCCTCCTCCACGTCGTCCACCGCCCCAACGCCTTCTCCTGCAACATGGTCCTCAAGGCGGCCCGCGAGCATGGGCTGCCGCACCTGTGCCTCCCGCTCTACGCGTCCATGTCCGCGGCCCCCGACTGCTACACCCATACCATCCTCGCCGCCGCCTGCGCCACCAGGAGGGCCATCGAAGAAGGCCGCCAGGTGCACTGCCACGCCGTCAGGCACGGGTTCGGGCGCAACCTGTACCTCGCGAACGCGCTGATGAGTATGTACTCCGCGTGTGGGTGCCTCGGCGACGCGCGCAAGGTGTTCGACGCGGGTCCTGTTTGGGACGCCGTTTCTTGGAACACGATCCTGGCCGCGTACGTGCAGGCTGAGGATGTGGACCAGGCGGTTGGGGTGTTTGCACGGATGCCTGAACGGGGTGCTGCGGCGGTGAGTTCGATGGTGTCGCTGTTTGGGAGGAGAGGAATGGTGGACGAGGCGAGGAAGGTGTTTGATGTGGTGGAGCGCAAGGATGTTTTCACGTGGACTGCGATGATTTCTTGCTTTCAGCGGAATGGCAAGTTTGCAGAGGCGTTGGCTTTGTTCTCAGATATGCGTGGGGAGGGGTGGCCTGTGGATGAGGCAGTCATGGTCTGTGTTGTCGCTGCCTGTGCACGGTTGGAGGTAACTCGGAATGGGGAGATGTGTCATGGGCTGGCTTTCAGAGCTGGCCTTGGCTCGAGGTTGAACGTCCAGAACGCATTGATCCACATGTACTCAAGTTTTCTGAATGTTGTTGCGGCACGAAGATTGTTTGACAGTGGCCAGTGTTTGGACCAGTTCTCTTGGAACTCGATGATAGCTGGCTATCTTAAGAATGGCTCTGTCAAGGATGCAAAGGAATTGTTCACTGTAATGCCTGACAAAGATAATGTTTCTTGGACTACAATGATATCTGGTTGTGTGCAAAATGACCAGTCCTCAGAGGCACTCACTATTTTCAACAACATGCAAGCCCAAGGAATCAAGCCAGATGAGGTTACGCTTGTAAGCGTCATCTCTGCATGTACTAATATGTCTTCTCTCGAGCAAGGCAAGTCAATGCATGAGTACATAAGGGAACACCAATATACCATCACAGTCATACTTGGGACTAGCCTCATTGACATGTACATGAAGTGTGGGTGCTTAGAATCTGCATTAGAAGTCTTCGATACAATGGAAGAAAGAGGAACACCTTGCTGGAATGCTGTCATTGTGGGGCTGGCCATGAATGGTCTGGTGATGAAGTCCCTTGACATGTTTTCGGAGATGGAATCATCTAGCACTGCCACTCCAAATGAGATAACTTTCACTGGAGTTTTGAGTGCTTGCAGACATGCTGGCCTAGTTGAGGAGGGCCAACATTTCTTCAAGTTGATGCAGCACAAGTATCACATTATCCCAAACATCAGACATTATGGATGCATGGTGGATCTTCTTGGACGTGCTGGATATGTCAAAGAGGCAGAGAATCTGATTGAGAGCATGCCCATGTCACCAGATGTTCCAGCATGGGGTGCTTTGCTTGGTTCCTGCTGGAAACATGGTGATAATGAGGTTGGAGAAAGGGTGGGGAGGAAGCTTGTCAATCTAGATCCTCACCATGACGGGTTCCACACTATGCTATCTAACATATATGCTTCAGAAGGAATGTGGCAACATGTAAAGGACCTAAGGGGCTCCATGAAACAATGGCATGTCCCAAAAATTCCTGGTTCTAGTGTGGTTGAATCATCACTACCTTTGTGA
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| Protein seq | MLTVTLLDAHLARCSSARHLLQIHAQFVASGLLADAFAASRLILFTTSTRLLPLPFHHSLRLLHVVHRPNAFSCNMVLKAAREHGLPHLCLPLYASMSAAPDCYTHTILAAACATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVKDLRGSMKQWHVPKIPGSSVVESSLPL |
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| Function | Pentatricopeptide repeat-containing protein At2g13600 [UniProtKB/Swiss-Prot:Q9SIT7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0314400 | OsNip_03t0314400-01 | Chr03 | 11252342 | 11255305 | + | RAP2018-11-26 | ||
| CDS seq | ATGCTCACGGTGACCCTCCTGGACGCGCACCTCGCGCGGTGCAGCTCGGCGCGCCACCTCCTCCAGATCCACGCCCAGTTCGTCGCGTCCGGTCTCCTCGCCGACGCCTTCGCCGCCAGCCGCCTCATCCTCTTCACCACCTCCACCCGCCTCCTCCCGCTCCCGTTCCACCACTCGCTCCGCCTCCTCCACGTCGTCCACCGCCCCAACGCCTTCTCCTGCAACATGGTCCTCAAGGCGGCCCGCGAGCATGGGCTGCCGCACCTGTGCCTCCCGCTCTACGCGTCCATGTCCGCGGCCCCCGACTGCTACACCCATACCATCCTCGCCGCCGCCTGCGCCACCAGGAGGGCCATCGAAGAAGGCCGCCAGGTGCACTGCCACGCCGTCAGGCACGGGTTCGGGCGCAACCTGTACCTCGCGAACGCGCTGATGAGTATGTACTCCGCGTGTGGGTGCCTCGGCGACGCGCGCAAGGTGTTCGACGCGGGTCCTGTTTGGGACGCCGTTTCTTGGAACACGATCCTGGCCGCGTACGTGCAGGCTGAGGATGTGGACCAGGCGGTTGGGGTGTTTGCACGGATGCCTGAACGGGGTGCTGCGGCGGTGAGTTCGATGGTGTCGCTGTTTGGGAGGAGAGGAATGGTGGACGAGGCGAGGAAGGTGTTTGATGTGGTGGAGCGCAAGGATGTTTTCACGTGGACTGCGATGATTTCTTGCTTTCAGCGGAATGGCAAGTTTGCAGAGGCGTTGGCTTTGTTCTCAGATATGCGTGGGGAGGGGTGGCCTGTGGATGAGGCAGTCATGGTCTGTGTTGTCGCTGCCTGTGCACGGTTGGAGGTAACTCGGAATGGGGAGATGTGTCATGGGCTGGCTTTCAGAGCTGGCCTTGGCTCGAGGTTGAACGTCCAGAACGCATTGATCCACATGTACTCAAGTTTTCTGAATGTTGTTGCGGCACGAAGATTGTTTGACAGTGGCCAGTGTTTGGACCAGTTCTCTTGGAACTCGATGATAGCTGGCTATCTTAAGAATGGCTCTGTCAAGGATGCAAAGGAATTGTTCACTGTAATGCCTGACAAAGATAATGTTTCTTGGACTACAATGATATCTGGTTGTGTGCAAAATGACCAGTCCTCAGAGGCACTCACTATTTTCAACAACATGCAAGCCCAAGGAATCAAGCCAGATGAGGTTACGCTTGTAAGCGTCATCTCTGCATGTACTAATATGTCTTCTCTCGAGCAAGGCAAGTCAATGCATGAGTACATAAGGGAACACCAATATACCATCACAGTCATACTTGGGACTAGCCTCATTGACATGTACATGAAGTGTGGGTGCTTAGAATCTGCATTAGAAGTCTTCGATACAATGGAAGAAAGAGGAACACCTTGCTGGAATGCTGTCATTGTGGGGCTGGCCATGAATGGTCTGGTGATGAAGTCCCTTGACATGTTTTCGGAGATGGAATCATCTAGCACTGCCACTCCAAATGAGATAACTTTCACTGGAGTTTTGAGTGCTTGCAGACATGCTGGCCTAGTTGAGGAGGGCCAACATTTCTTCAAGTTGATGCAGCACAAGTATCACATTATCCCAAACATCAGACATTATGGATGCATGGTGGATCTTCTTGGACGTGCTGGATATGTCAAAGAGGCAGAGAATCTGATTGAGAGCATGCCCATGTCACCAGATGTTCCAGCATGGGGTGCTTTGCTTGGTTCCTGCTGGAAACATGGTGATAATGAGGTTGGAGAAAGGGTGGGGAGGAAGCTTGTCAATCTAGATCCTCACCATGACGGGTTCCACACTATGCTATCTAACATATATGCTTCAGAAGGAATGTGGCAACATGTAAAGGACCTAAGGGGCTCCATGAAACAATGGCATGTCCCAAAAATTCCTGGTTCTAGTGTGGTTGAATCATCACTACCTTTGTGA
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| Protein seq | MLTVTLLDAHLARCSSARHLLQIHAQFVASGLLADAFAASRLILFTTSTRLLPLPFHHSLRLLHVVHRPNAFSCNMVLKAAREHGLPHLCLPLYASMSAAPDCYTHTILAAACATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVKDLRGSMKQWHVPKIPGSSVVESSLPL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.221840 | 0.000000 | 0.691986 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0688100 | RBH | 0.527081 | 0.509662 | 0.714118 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g19980 | RBH | 0.148158 | 0.506486 | 0.175920 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0314400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0015510 | RBH | 0.093908 | 0.0 | 0.626996 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0015350 | RBH | 0.0 | 0.0 | 0.157707 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0015350 | RBH | 0.208179 | 0.0 | 1.465249 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0015350 | RBH | 0.0 | 0.029061 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0015160 | RBH | 0.258735 | 0.0 | 1.676853 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0187600 | RBH | 1.272537 | 2.6950595 | 1.7773095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0015060 | RBH | 0.055588 | 0.0 | 0.229163 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0191200 | RBH | 1.1731845 | 2.31073 | 8.268942 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0015310 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0015300 | RBH | 0.177043 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0015360 | RBH | 0.0 | 3.121225 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0015240 | RBH | 0.091115 | 0.118006 | 0.134144 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0015180 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G015110 | RBH | 0.0 | 0.876404 | 0.174824 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0014990 | RBH | 0.234922 | 0.0 | 1.145999 |
