Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0284400 | OGI:03026540 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:9781436-9782524 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTTTAAAACATCTCATCATACTGCTTTGAACAACTTTGTTGTAAACCTGGATACACTGATTGATGGTACAACTACACAAGCACTAGTAGTTATTGACCATTCTAATTGTGCATTGCCATTGCCCCTCAACCTACTAAACTTTGATCTCTGTAGTCTCTACAGGTAAAATTAAATTATCAAAACACTAGTTGTGGAACAAGCATTCCCTCTAAGTACGCAACGTAATCCTAATAACATCAGAACTCGGTAATCTTATGAAATCAGACCAGTAGGCATGCGTTGTAAGAGGTAAAACTTTTGTGATTCAATTCAAACGTGAGGCAGTAAAAGTACAGGAATTCTACAAGAAATGAGTGAGATGAGAGAAACGAAGCCACAAAACCATCTCTCAACAGCCATCAGGCGGCGCCGACCTCCTGCTCGAGCTTGCGCACGTACGCCGAGAGCACGGAGACGACGTCCCTGGCCGGCGCCTGCAGCGTGGTGACGACGGAGGTCGCGGGCCCCTGCAGCGAGCCGAGCAGCTTGGCGTACACCTCGGCGCGGCTGGGCATTGTCTCGAGCGCCTTGAAGTCCCCGGGGGCGTAGAACTTGCCCTCGAACACCGCGCCGACGAAGTCGTTGGTCTCCTCGAGGCGCTCCTCCTTCTGGAAGGCGCGGTAGGGCTTGAGCGCGGCGGGGACCTCCTCGGTGTGGACGAACAGCCACGCGTTCATCCCCTTCATGCACGGCTTGAGCGCCTCCCACGGCGTGCCCTCGATGGCCTTCCCCACCAGCGTGTTCTTCGCCACCAGCAGCCGGCAGGTCTCCGGGAGGGTGTCGCGGATGCCCTGCAGCTGCTTCACCGTGAGGCCCTCGTAGCGGATCCCGGCGAGGAGGTAGCAGCCCTCCAGCTGCTCGCGGACGGCGGCCACCGTGTCCTCCTTGCGGCCTCGGGTGATGGCCGCGCTGATGGTGGAGCGGCGGAGCGGGCGGGGGCGGGGGCGGGGTGCGAGGGTCTGGAACGCCGGGAGGGGCTTCGCGGTGGGGAGGGTGGTGCGGAGGAAGGAGGAGGTCTCCATCTTCGGAGGCCGGGAGCTATGGCGGGTT
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| CDS seq | ATGGAGACCTCCTCCTTCCTCCGCACCACCCTCCCCACCGCGAAGCCCCTCCCGGCGTTCCAGACCCTCGCACCCCGCCCCCGCCCCCGCCCGCTCCGCCGCTCCACCATCAGCGCGGCCATCACCCGAGGCCGCAAGGAGGACACGGTGGCCGCCGTCCGCGAGCAGCTGGAGGGCTGCTACCTCCTCGCCGGGATCCGCTACGAGGGCCTCACGGTGAAGCAGCTGCAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGAACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGGGAGGCGCTCAAGCCGTGCATGAAGGGGATGAACGCGTGGCTGTTCGTCCACACCGAGGAGGTCCCCGCCGCGCTCAAGCCCTACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGAGACCAACGACTTCGTCGGCGCGGTGTTCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCGCCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCACGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCGAGCAGGAGGTCGGCGCCGCCTGA
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| Protein seq | METSSFLRTTLPTAKPLPAFQTLAPRPRPRPLRRSTISAAITRGRKEDTVAAVREQLEGCYLLAGIRYEGLTVKQLQGIRDTLPETCRLLVAKNTLVGKAIEGTPWEALKPCMKGMNAWLFVHTEEVPAALKPYRAFQKEERLEETNDFVGAVFEGKFYAPGDFKALETMPSRAEVYAKLLGSLQGPATSVVTTLQAPARDVVSVLSAYVRKLEQEVGAA |
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| Function | 50S ribosomal protein L10, chloroplastic [UniProtKB/Swiss-Prot:O80362] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0284400 | OsNip_03t0284400-01 | Chr03 | 9781436 | 9782524 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGACCTCCTCCTTCCTCCGCACCACCCTCCCCACCGCGAAGCCCCTCCCGGCGTTCCAGACCCTCGCACCCCGCCCCCGCCCCCGCCCGCTCCGCCGCTCCACCATCAGCGCGGCCATCACCCGAGGCCGCAAGGAGGACACGGTGGCCGCCGTCCGCGAGCAGCTGGAGGGCTGCTACCTCCTCGCCGGGATCCGCTACGAGGGCCTCACGGTGAAGCAGCTGCAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGAACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGGGAGGCGCTCAAGCCGTGCATGAAGGGGATGAACGCGTGGCTGTTCGTCCACACCGAGGAGGTCCCCGCCGCGCTCAAGCCCTACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGAGACCAACGACTTCGTCGGCGCGGTGTTCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCGCCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCACGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCGAGCAGGAGGTCGGCGCCGCCTGA
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| Protein seq | METSSFLRTTLPTAKPLPAFQTLAPRPRPRPLRRSTISAAITRGRKEDTVAAVREQLEGCYLLAGIRYEGLTVKQLQGIRDTLPETCRLLVAKNTLVGKAIEGTPWEALKPCMKGMNAWLFVHTEEVPAALKPYRAFQKEERLEETNDFVGAVFEGKFYAPGDFKALETMPSRAEVYAKLLGSLQGPATSVVTTLQAPARDVVSVLSAYVRKLEQEVGAA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 9.254178 | 7.823140 | 4.467057 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0121500 | RBH | 0.988305 | 0.905207 | 1.543898 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g17580 | RBH | 5.892239 | 4.959216 | 1.082324 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0284400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0013440 | RBH | 2.819834 | 3.255751 | 4.721148 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0013250 | RBH | 1.066552 | 1.957656 | 4.173148 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0013290 | RBH | 7.111722 | 2.779880 | 9.086436 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0013250 | RBH | 1.131461 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0013100 | RBH | 22.026304 | 0.326295 | 16.457010 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0166600 | RBH | 45.913256 | 12.7117245 | 14.2885245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0013010 | RBH | 2.750720 | 0.253506 | 1.770288 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0167700 | RBH | 41.840868 | 7.600856 | 7.643568 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0013170 | RBH | 0.610977 | 0.091636 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0013190 | RBH | 2.320252 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0013260 | RBH | 35.707863 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0013130 | RBH | 5.621010 | 0.0 | 3.948831 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0013090 | RBH | 2.648356 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G013040 | RBH | 0.876998 | 0.0 | 3.560375 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0012890 | RBH | 9.952316 | 5.962366 | 6.346714 |
