Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0269300 | OGI:03024200 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:8964025-8966806 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAAATGCACAACACAACCATTCCATTCATGTCCTCTTGACCAGCAACATTTGTTCAATCTCAAAAAAAAAAAAAGAAATAGTACTACCTAAACAATATATCTTCAGTTCACCTGCCCTTAGCGGGGCTTCGGTTGGCTTTGTCTGTAAGAGCTTGTTCACTGCTGTAATCGCTGCTAGTGTTTCTCTGACTCCGCGGCGCCCTTCGTGATCGTGGCCCGATGGACTCACCGGATTCCATGATGGAACTGTATGTATCTTCTGCGTACGTTATCCTAAATATAGAGTTTAGATCTTCTCCGTGCGTTTCTCCTTGCAAGTGCTTCAGGATCTGATAGGAGGAAAGAAACTTCTTTTCACATTTATGTGTCACACATCAAATATTGTTCTCTGGTTATGTGGTTATTGTTCTATTTTATTCAGGAAATAAGGCACATGTGATTCTACGACTATTTCTACTGAACATTTAGCAGTTTCAGCGTTTCACCATTTTCAGGGAAGGACTGAATTATACTCAGGGAGTAGTGATTAGGAAGCGAACCTGAACCATGGATGGACGCAGATGTGCTGATTGGCGCACGGCAGCGGCGGCACACTCGATCATTCGCATCATTATGTTTTCATCATAATCATCTCCAATATCTGGATCAACAAGGATATCAAAGTTGCCTTCCTCCGTAGCTTCGGAAAGCAAGGGTTTCGCCTGAAGAAGTATATTCAGAGGAAATGTTTTGTCAGGCTAAACATCAAAATTCCTCTCAAAACTACATTTATTGGAGTGAAGGAAATGTCTTAGATGTTAAGGCATTAATTTATCAAGAAGTTTGTTGTTAGAAACTGACCCAAGCAACTAACGTGCTATCCATGTAAGACTCAGATGACTGAACCGGCAGCCTTCCAGTTATCAGTTCCAAGAGGACGACACCAAAAGCAAAGACATCGGCTTTGTCAGTAAGTTTCCCGCTAGACAAAAACTCTGGAGCTATGTACCTGCAGAAAAGAGGATGTGCTAGCTATGAATATAATGAATATGGTAACACTTATCCTATAGATATTCATGTCCATAAATAAGAGGGAATGCTGAAGAAAAACTGACCCAAATGTGCCCATTATTCTTGTGGAAACGTGAGTGTGGTTTCCTGGTTGATACTTTGCTAGACCAAAATCTGCAACCTGCAAAGGATCAAAACATACTGAGTATAGTACTGTGCAATGGCATATTGTTTGCAATTCAAACTCGTCCTGTAAAAACCAGATCTTCTTGAAACGTTGAACAATATGTGCAGAGAGAGTACCTTGGGCTCAAAATCATGATCCAGCAGAATATTGGATGCCTTGACATCACGATGTATAATTTTAGGAGAACCTGAATAGTAAATGAAATTTCTCGTATTGTATCACAGTTCAGCACTAAATATTAAATCGAATATAACACGAAATGGATGTGTAGAGCAGAACTAACAGTCATCGTGTAGATAGGCCAAACCCCTTGCAGACCCCACAGCGATTTTCCATCTTTGCTGCCAATCCAGAGGTGGCCCCTTGTTCCCTGCATATAAAGTTCAACATCAACATGATCACATATAAAGTTCAACATCAACATGATCAGAGTAAAAACCAAGACCAAAAAACATTGACTAAACAGTTAGCATGCATTTGACAGAAGAAAAAAAATATGTAACATACATTTTTTCCATTTTAAATGTAGACATAGGTTTACCGTGTAAATGCGTGTCGAGCGTCTTGTTGGGGACAAACTCGTAAACCAGCAGCCTCTCGTTGCCGGAGATGCAGAACCCCACGAGCGAGACGAGGTTCCTGTGGTGCACGCGAGTGATGATCTCCACCTCGGCGCGGAACTCGCGGTCGCCCTGCTTGCTCTCCGTCTTGAGCTTCTTGATCGCCACCTCGGTGCCATCCTGCAGCGTCCCCCTGTACACGCACCCGAAGCCGCCCTGCCCGATGACGTTGTCGGGAGAGAACCCGTCCGTCGCGGCGGCCAGCTGGTCGTACGAGAGCGAGCCGCCGGTGGGCAGCTCGGTGAGGATGTCGATGGAGTGCGGGCGCTCGGAGCCGGCGTCGGAGAACGTGCCGCTGGTCTGCGGCGGCGTCGGGTGCTGGTGCTGAATGAAGTAGTGGTCCGACGGCGGTTGCTGCGCAACGAATGGCTGCGGCGGAAGGTCACCTGCAAGAACCAAGTGCGCGCGGTGAATATCTCCGACGACGACGACGACATGGCCGTACACGTTGGCGAACGTGACAAAATGTGCGCACCTTTGTAGTAGGGGTTGGGGTTGTATATTGGCGGTGGTAGCGGAAAAGGCTGGGCCTGCCGCCGCCGCCTGCGCTGCCGCCGGCATCGACGGATCCAAAGCGTGAGCACGCACAGAGCCAAAACCGCCCCGACGACGCCGGCCGCCACTATGATCCAGACCACCGCCGTAGAGCTCAAGCCCGAGCTCGAGTCCTTCTGCGGTGCCGCGGGCGCCGGGTCGGAAGGCGGGGCCGTGAGCTGGGCCAAGGCACGGCGGACTCTCTGCCCGTCGTCGGAGGGCGTGACAGGTCCACCGGTGGTCAGGAGAGCCTTGGCGCGGCCGACCACGTCGCCAGCGACGGCGTAGAGCTTCGCGAAGGCCGACGGCTCTTCGGGAGGCACGTACTGAGGCGGCGTCGGCGGTGGCGGCGGGGGCACGAACGCCGCCGGCCGCGCCCTCTCGGCCGGCTTGGAATACCAGAAGCGCGCCCACATTTCAGCTACTGCATGTGCACAACAGCACAAGCAT
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| CDS seq | ATGTGGGCGCGCTTCTGGTATTCCAAGCCGGCCGAGAGGGCGCGGCCGGCGGCGTTCGTGCCCCCGCCGCCACCGCCGACGCCGCCTCAGTACGTGCCTCCCGAAGAGCCGTCGGCCTTCGCGAAGCTCTACGCCGTCGCTGGCGACGTGGTCGGCCGCGCCAAGGCTCTCCTGACCACCGGTGGACCTGTCACGCCCTCCGACGACGGGCAGAGAGTCCGCCGTGCCTTGGCCCAGCTCACGGCCCCGCCTTCCGACCCGGCGCCCGCGGCACCGCAGAAGGACTCGAGCTCGGGCTTGAGCTCTACGGCGGTGGTCTGGATCATAGTGGCGGCCGGCGTCGTCGGGGCGGTTTTGGCTCTGTGCGTGCTCACGCTTTGGATCCGTCGATGCCGGCGGCAGCGCAGGCGGCGGCGGCAGGCCCAGCCTTTTCCGCTACCACCGCCAATATACAACCCCAACCCCTACTACAAAGGTGACCTTCCGCCGCAGCCATTCGTTGCGCAGCAACCGCCGTCGGACCACTACTTCATTCAGCACCAGCACCCGACGCCGCCGCAGACCAGCGGCACGTTCTCCGACGCCGGCTCCGAGCGCCCGCACTCCATCGACATCCTCACCGAGCTGCCCACCGGCGGCTCGCTCTCGTACGACCAGCTGGCCGCCGCGACGGACGGGTTCTCTCCCGACAACGTCATCGGGCAGGGCGGCTTCGGGTGCGTGTACAGGGGGACGCTGCAGGATGGCACCGAGGTGGCGATCAAGAAGCTCAAGACGGAGAGCAAGCAGGGCGACCGCGAGTTCCGCGCCGAGGTGGAGATCATCACTCGCGTGCACCACAGGAACCTCGTCTCGCTCGTGGGGTTCTGCATCTCCGGCAACGAGAGGCTGCTGGTTTACGAGTTTGTCCCCAACAAGACGCTCGACACGCATTTACACGGGAACAAGGGGCCACCTCTGGATTGGCAGCAAAGATGGAAAATCGCTGTGGGGTCTGCAAGGGGTTTGGCCTATCTACACGATGACTGTTCTCCTAAAATTATACATCGTGATGTCAAGGCATCCAATATTCTGCTGGATCATGATTTTGAGCCCAAGGTTGCAGATTTTGGTCTAGCAAAGTATCAACCAGGAAACCACACTCACGTTTCCACAAGAATAATGGGCACATTTGGGTACATAGCTCCAGAGTTTTTGTCTAGCGGGAAACTTACTGACAAAGCCGATGTCTTTGCTTTTGGTGTCGTCCTCTTGGAACTGATAACTGGAAGGCTGCCGGTTCAGTCATCTGAGTCTTACATGGATAGCACGTTAGTTGCTTGGGCGAAACCCTTGCTTTCCGAAGCTACGGAGGAAGGCAACTTTGATATCCTTGTTGATCCAGATATTGGAGATGATTATGATGAAAACATAATGATGCGAATGATCGAGTGTGCCGCCGCTGCCGTGCGCCAATCAGCACATCTGCGTCCATCCATGGTTCAGATCCTGAAGCACTTGCAAGGAGAAACGCACGGAGAAGATCTAAACTCTATATTTAGGATAACGTACGCAGAAGATACATACAGTTCCATCATGGAATCCGGTGAGTCCATCGGGCCACGATCACGAAGGGCGCCGCGGAGTCAGAGAAACACTAGCAGCGATTACAGCAGTGAACAAGCTCTTACAGACAAAGCCAACCGAAGCCCCGCTAAGGGCAGGTGA
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| Protein seq | MWARFWYSKPAERARPAAFVPPPPPPTPPQYVPPEEPSAFAKLYAVAGDVVGRAKALLTTGGPVTPSDDGQRVRRALAQLTAPPSDPAPAAPQKDSSSGLSSTAVVWIIVAAGVVGAVLALCVLTLWIRRCRRQRRRRRQAQPFPLPPPIYNPNPYYKGDLPPQPFVAQQPPSDHYFIQHQHPTPPQTSGTFSDAGSERPHSIDILTELPTGGSLSYDQLAAATDGFSPDNVIGQGGFGCVYRGTLQDGTEVAIKKLKTESKQGDREFRAEVEIITRVHHRNLVSLVGFCISGNERLLVYEFVPNKTLDTHLHGNKGPPLDWQQRWKIAVGSARGLAYLHDDCSPKIIHRDVKASNILLDHDFEPKVADFGLAKYQPGNHTHVSTRIMGTFGYIAPEFLSSGKLTDKADVFAFGVVLLELITGRLPVQSSESYMDSTLVAWAKPLLSEATEEGNFDILVDPDIGDDYDENIMMRMIECAAAAVRQSAHLRPSMVQILKHLQGETHGEDLNSIFRITYAEDTYSSIMESGESIGPRSRRAPRSQRNTSSDYSSEQALTDKANRSPAKGR |
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| Function | Proline-rich receptor-like protein kinase PERK1 [UniProtKB/Swiss-Prot:Q9LV48] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0269300 | OsNip_03t0269300-01 | Chr03 | 8964025 | 8966806 | - | RAP2018-11-26 | ||
| CDS seq | ATGTGGGCGCGCTTCTGGTATTCCAAGCCGGCCGAGAGGGCGCGGCCGGCGGCGTTCGTGCCCCCGCCGCCACCGCCGACGCCGCCTCAGTACGTGCCTCCCGAAGAGCCGTCGGCCTTCGCGAAGCTCTACGCCGTCGCTGGCGACGTGGTCGGCCGCGCCAAGGCTCTCCTGACCACCGGTGGACCTGTCACGCCCTCCGACGACGGGCAGAGAGTCCGCCGTGCCTTGGCCCAGCTCACGGCCCCGCCTTCCGACCCGGCGCCCGCGGCACCGCAGAAGGACTCGAGCTCGGGCTTGAGCTCTACGGCGGTGGTCTGGATCATAGTGGCGGCCGGCGTCGTCGGGGCGGTTTTGGCTCTGTGCGTGCTCACGCTTTGGATCCGTCGATGCCGGCGGCAGCGCAGGCGGCGGCGGCAGGCCCAGCCTTTTCCGCTACCACCGCCAATATACAACCCCAACCCCTACTACAAAGGTGACCTTCCGCCGCAGCCATTCGTTGCGCAGCAACCGCCGTCGGACCACTACTTCATTCAGCACCAGCACCCGACGCCGCCGCAGACCAGCGGCACGTTCTCCGACGCCGGCTCCGAGCGCCCGCACTCCATCGACATCCTCACCGAGCTGCCCACCGGCGGCTCGCTCTCGTACGACCAGCTGGCCGCCGCGACGGACGGGTTCTCTCCCGACAACGTCATCGGGCAGGGCGGCTTCGGGTGCGTGTACAGGGGGACGCTGCAGGATGGCACCGAGGTGGCGATCAAGAAGCTCAAGACGGAGAGCAAGCAGGGCGACCGCGAGTTCCGCGCCGAGGTGGAGATCATCACTCGCGTGCACCACAGGAACCTCGTCTCGCTCGTGGGGTTCTGCATCTCCGGCAACGAGAGGCTGCTGGTTTACGAGTTTGTCCCCAACAAGACGCTCGACACGCATTTACACGGGAACAAGGGGCCACCTCTGGATTGGCAGCAAAGATGGAAAATCGCTGTGGGGTCTGCAAGGGGTTTGGCCTATCTACACGATGACTGTTCTCCTAAAATTATACATCGTGATGTCAAGGCATCCAATATTCTGCTGGATCATGATTTTGAGCCCAAGGTTGCAGATTTTGGTCTAGCAAAGTATCAACCAGGAAACCACACTCACGTTTCCACAAGAATAATGGGCACATTTGGGTACATAGCTCCAGAGTTTTTGTCTAGCGGGAAACTTACTGACAAAGCCGATGTCTTTGCTTTTGGTGTCGTCCTCTTGGAACTGATAACTGGAAGGCTGCCGGTTCAGTCATCTGAGTCTTACATGGATAGCACGTTAGTTGCTTGGGCGAAACCCTTGCTTTCCGAAGCTACGGAGGAAGGCAACTTTGATATCCTTGTTGATCCAGATATTGGAGATGATTATGATGAAAACATAATGATGCGAATGATCGAGTGTGCCGCCGCTGCCGTGCGCCAATCAGCACATCTGCGTCCATCCATGGTTCAGATCCTGAAGCACTTGCAAGGAGAAACGCACGGAGAAGATCTAAACTCTATATTTAGGATAACGTACGCAGAAGATACATACAGTTCCATCATGGAATCCGGTGAGTCCATCGGGCCACGATCACGAAGGGCGCCGCGGAGTCAGAGAAACACTAGCAGCGATTACAGCAGTGAACAAGCTCTTACAGACAAAGCCAACCGAAGCCCCGCTAAGGGCAGGTGA
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| Protein seq | MWARFWYSKPAERARPAAFVPPPPPPTPPQYVPPEEPSAFAKLYAVAGDVVGRAKALLTTGGPVTPSDDGQRVRRALAQLTAPPSDPAPAAPQKDSSSGLSSTAVVWIIVAAGVVGAVLALCVLTLWIRRCRRQRRRRRQAQPFPLPPPIYNPNPYYKGDLPPQPFVAQQPPSDHYFIQHQHPTPPQTSGTFSDAGSERPHSIDILTELPTGGSLSYDQLAAATDGFSPDNVIGQGGFGCVYRGTLQDGTEVAIKKLKTESKQGDREFRAEVEIITRVHHRNLVSLVGFCISGNERLLVYEFVPNKTLDTHLHGNKGPPLDWQQRWKIAVGSARGLAYLHDDCSPKIIHRDVKASNILLDHDFEPKVADFGLAKYQPGNHTHVSTRIMGTFGYIAPEFLSSGKLTDKADVFAFGVVLLELITGRLPVQSSESYMDSTLVAWAKPLLSEATEEGNFDILVDPDIGDDYDENIMMRMIECAAAAVRQSAHLRPSMVQILKHLQGETHGEDLNSIFRITYAEDTYSSIMESGESIGPRSRRAPRSQRNTSSDYSSEQALTDKANRSPAKGR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0269300 | OsNip_03t0269300-02 | Chr03 | 8964027 | 8966806 | - | RAP2018-11-26 | ||
| CDS seq | ATGTGGGCGCGCTTCTGGTATTCCAAGCCGGCCGAGAGGGCGCGGCCGGCGGCGTTCGTGCCCCCGCCGCCACCGCCGACGCCGCCTCAGTACGTGCCTCCCGAAGAGCCGTCGGCCTTCGCGAAGCTCTACGCCGTCGCTGGCGACGTGGTCGGCCGCGCCAAGGCTCTCCTGACCACCGGTGGACCTGTCACGCCCTCCGACGACGGGCAGAGAGTCCGCCGTGCCTTGGCCCAGCTCACGGCCCCGCCTTCCGACCCGGCGCCCGCGGCACCGCAGAAGGACTCGAGCTCGGGCTTGAGCTCTACGGCGGTGGTCTGGATCATAGTGGCGGCCGGCGTCGTCGGGGCGGTTTTGGCTCTGTGCGTGCTCACGCTTTGGATCCGTCGATGCCGGCGGCAGCGCAGGCGGCGGCGGCAGGCCCAGCCTTTTCCGCTACCACCGCCAATATACAACCCCAACCCCTACTACAAAGGTGACCTTCCGCCGCAGCCATTCGTTGCGCAGCAACCGCCGTCGGACCACTACTTCATTCAGCACCAGCACCCGACGCCGCCGCAGACCAGCGGCACGTTCTCCGACGCCGGCTCCGAGCGCCCGCACTCCATCGACATCCTCACCGAGCTGCCCACCGGCGGCTCGCTCTCGTACGACCAGCTGGCCGCCGCGACGGACGGGTTCTCTCCCGACAACGTCATCGGGCAGGGCGGCTTCGGGTGCGTGTACAGGGGGACGCTGCAGGATGGCACCGAGGTGGCGATCAAGAAGCTCAAGACGGAGAGCAAGCAGGGCGACCGCGAGTTCCGCGCCGAGGTGGAGATCATCACTCGCGTGCACCACAGGAACCTCGTCTCGCTCGTGGGGTTCTGCATCTCCGGCAACGAGAGGCTGCTGGTTTACGAGTTTGTCCCCAACAAGACGCTCGACACGCATTTACACGGTAAACCTATGTCTACATTTAAAATGGAAAAAATGTATGTTACATATTTTTTTTCTTCTGTCAAATGCATGCTAACTGTTTAG
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| Protein seq | MWARFWYSKPAERARPAAFVPPPPPPTPPQYVPPEEPSAFAKLYAVAGDVVGRAKALLTTGGPVTPSDDGQRVRRALAQLTAPPSDPAPAAPQKDSSSGLSSTAVVWIIVAAGVVGAVLALCVLTLWIRRCRRQRRRRRQAQPFPLPPPIYNPNPYYKGDLPPQPFVAQQPPSDHYFIQHQHPTPPQTSGTFSDAGSERPHSIDILTELPTGGSLSYDQLAAATDGFSPDNVIGQGGFGCVYRGTLQDGTEVAIKKLKTESKQGDREFRAEVEIITRVHHRNLVSLVGFCISGNERLLVYEFVPNKTLDTHLHGKPMSTFKMEKMYVTYFFSSVKCMLTV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g16260 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0269300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0012380 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0012210 | RBH | 0.0 | 0.586370 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0012230 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0012180 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0012040 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0152000 | RBH | 0 | 0.1333855 | 0.0701425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0011940 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0153300 | RBH | 0.0666875 | 0.105228 | 0.2532665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0012080 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0012130 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0012140 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0012070 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0012010 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G011980 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0011850 | RBH | 0.0 | 0.0 | 0.0 |
