Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0252900 | OGI:03021890 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:8060898-8061996 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CATAGTCAGAAACCAAACCTTGCATTCCATTACATTAATTAGTTAATCAAGACCAACAAACCACACGTTACAAAGTAGAGCCAGATACATTTTACATCCCTGACAACTGCATGCATACGTAGTTGCATACCACTGCTGACTACTGCTCGATGGCAGAAGCTTTAGCCAGTACTCCAGCAGCTAGCCATGCATGCTCTTCCCTCTCTCTCAGACTCTCACTACATAACAAATTAAGCTACAGCTATCAAGGTAGATGCTTCCAATATCCAAAGCCGTAGACCACATTCAGATATGTATACGTAAATACACATATATAGCACACATAATATGCATATCTCGTACTCTTGTTATCTTTACGTGCTTGTTGTTTGTTGACACACATTCATTTCTCCGTACGTCATGTCTGCGGCCCGTTGGCTCTGCATGCACAAATGCATTATATAAAATCATGAGAGACACCTCGATCACTACTAGAAAAATGATGTTTCATAATATTGGCTTATTATTTTTATTGGTGGAAAAATTTAAAAACCACCAGCAAACTCGTAACGAGAGGGTGAGGGGCACCGACCATCAGCAAAATGAATTTTCACTAGCGACCTATCTAATGCAGCCGCCAGCGAAAATATGTCATTTTTTTCGATCGATCGAAATCGAAGGCGATATGATCGATCGCTGATCGATCTTGCGTCAGTAATTTTTACCTGCTCTGGCGCCTGTTCGTGTTGCCGTCGTTGTTCTTGTCCCTGCCATTGCCGTTGCCGTTGCCGCTGCCGCGGCCGGCGCCGGCGCCGGTGCCGGGGTAGCCGTAGTTTCCGGACTCGATGCTGCCGCAGTCGTCGACGAGGAGGTCGAAGTGGCGCCTCACGTCGTCCGCCGTCTTCCCCCCGCCGACCACCGCCGCCACGCGCTCCCACCGCCCCGGCGTGTCGCGGTCGTACATGGCCAGCGCCTGCTCGAACCTCGCGTTCTCCGCCCTGCTCCAATCCATGTACACACACACGCAAACCCTTCTTCTTTCTACTCCTCTTCTCGCCGGCCGACCGATCGTTTGTACGCTCACTGCTCAGTGCTCTAGCTTGCTGGCTGCTGCTGCTTC
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| CDS seq | ATGGATTGGAGCAGGGCGGAGAACGCGAGGTTCGAGCAGGCGCTGGCCATGTACGACCGCGACACGCCGGGGCGGTGGGAGCGCGTGGCGGCGGTGGTCGGCGGGGGGAAGACGGCGGACGACGTGAGGCGCCACTTCGACCTCCTCGTCGACGACTGCGGCAGCATCGAGTCCGGAAACTACGGCTACCCCGGCACCGGCGCCGGCGCCGGCCGCGGCAGCGGCAACGGCAACGGCAATGGCAGGGACAAGAACAACGACGGCAACACGAACAGGCGCCAGAGCAGGTAA |
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| Protein seq | MDWSRAENARFEQALAMYDRDTPGRWERVAAVVGGGKTADDVRRHFDLLVDDCGSIESGNYGYPGTGAGAGRGSGNGNGNGRDKNNDGNTNRRQSR |
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| Function | Protein RADIALIS-like 1 [UniProtKB/Swiss-Prot:F4JVB8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0252900 | OsNip_03t0252900-00 | Chr03 | 8061598 | 8061988 | - | RAP2018-11-26 | ||
| CDS seq | ATGGATTGGAGCAGGGCGGAGAACGCGAGGTTCGAGCAGGCGCTGGCCATGTACGACCGCGACACGCCGGGGCGGTGGGAGCGCGTGGCGGCGGTGGTCGGCGGGGGGAAGACGGCGGACGACGTGAGGCGCCACTTCGACCTCCTCGTCGACGACTGCGGCAGCATCGAGTCCGGAAACTACGGCTACCCCGGCACCGGCGCCGGCGCCGGCCGCGGCAGCGGCAACGGCAACGGCAATGGCAGGGACAAGAACAACGACGGCAACACGAACAGGCGCCAGAGCAGGTAA
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| Protein seq | MDWSRAENARFEQALAMYDRDTPGRWERVAAVVGGGKTADDVRRHFDLLVDDCGSIESGNYGYPGTGAGAGRGSGNGNGNGRDKNNDGNTNRRQSR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0252900 | OsNip_03t0252900-01 | Chr03 | 8060898 | 8061996 | - | IsoSeq | ||
| CDS seq | ATGGCAGGGACAAGAACAACGACGGCAACACGAACAGGCGCCAGAGCAGAGCCAACGGGCCGCAGACATGACGTACGGAGAAATGAATGTGTGTCAACAAACAACAAGCACGTAAAGATAACAAGAGTACGAGATATGCATATTATGTGTGCTATATATGTGTATTTACGTATACAT |
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| Protein seq | MAGTRTTTATRTGARAEPTGRRHDVRRNECVSTNNKHVKITRVRDMHIMCAIYVYLRIH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g14810 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0252900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0011220 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0011060 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0011070 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0011050 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0010910 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0137100 | RBH | 0.023414 | 6.290979 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0010800 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0137200 | RBH | 0 | 0.506955 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0010960 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0011030 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0011000 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0010980 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0010910 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G010900 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0010770 | RBH | 0.0 | 0.0 | 0.0 |
