Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0232900 | OGI:03018570 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:7046913-7051263 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGGGCCTGATTTATCAAGTGAGTTGCACCCTGAAAAATCAGCCAATACCACACCACAGTTTACAGGTACCGATCATCACTCATTATCAATTTGTATCTCACAGTACTAGCAAGTCCTCCGTTACATTTTACAACAGACCAGGTCTAGTCTTTTGGCCAACAACAACAGTCATCTTTTGTTTCTGAAGACGAGAGAGAATCAGCGGTCCTCTTTTTCGGGACACAAGCAGGGCACCTACAATCTATCCACATCCTACGAGCACACAGATAATTTCTAGCAGCCTTGCACGTCTCTCCACTTGAGGTATACCAGTCCAGAATGATAGTGTGTGTATGCTCCAGCAACAACTAACACATGAAAAAGCTGGTGGCTATGACCAGCAATGTCAAATTTTCCAGGCATCCAGCGCTCGGGCACCCGAGTTGCATACACCAGTGCCCCAATGCCATAGAAAAGGCCCATCAGAACCTCATATGCGGTAGTGTGCAATGCCTCTGGTTGGTGCCAAAAGAGGATCAATTTGTGAATGACAGGGATCACGCCGGATGCACCCATGCCAAAGAAGAGGCATGCTCGTATGGTCCGAAACTCAGGGTTCTGGAAAACAGGGAGTAAAGAGAAAGCAATAGTTGCCACTCCTAAAATAGTTATGCAGCTGAGATACAGGTTGCAAAAGAATGGATAGCACATGAAAGAATAGTATACTGGAGGGTAGAATGATGTTGCGATAAGAGCAGCAATGCCTGCATAATCAAGGCGAAGCATAATGTATGCAAGGCGACGGGAGTGGCAGGAGAGAAGATGGCATGTGCTGCTGGCAAGAAGGCAAAACATTGCTCCTCCCAAGAAGGCATAAAATGGCCATCTCGGAATTGGCCTAATCAACTGTGGCGCAATCATGTTTGCTATATCTTCCTTCATGCTTTGCTGCATAAAACAAAAAAAAAACGGGGGTATATAAGATGACGGGGACTGAATTAATGACCTTCACTCCAAAATTTCAATCAAATAATCACATGTGAGAAAATGTTATTTGCTATCTCTGAAGACAAAAATGTCTAGATAAAATCTAGTCATACCATACAATTGTTCTCTGTATGTGTAATTGTGTGCCAGTGTTTGTAAAACTAGACACCTTCAATAAAATGAGTGCTGACTAAACAAAGGGTTCTCAAAATCATAAAGTTGCAACTTCTTAATGATCCTGATTTTCCAGTAAAGCAGTGACCTGCCTAGGAATCTGTTGGTTTTTATATTTTTTACTGGTCATGGTATAGAAACCAAATCTTTCGTCAGCATCAGCTTAAACTAGCATAAACTCAACTTTTGTTCATGGTCATGGCCTAAACTTTGTCATAAGTCAGATGAAATCAGATCAGTACGAACTAGCATAAACTAAGAAACCAAACGATTGCGAATTGATATTCCATCCCTAGTAATAATTTCCGGTTGAAAATTGTGCCAGCATATTATCATTAATTTTGCGATATCTGAAATAACATACTAGTAGCATAATAAGTGAGTAATAAACTAGGGAAGTTGTTGACTACTTACAAGAACAGACAGACTGGTTTCATTGGAATGAGTAAATCTGTGCGGCAAGCAACTTGATAGTAACTCCAAGAGGTGCCAACGGGACAATGATGGAAGCACCTCAATTGAATTCCATGAGCTTTTCAATTCATCCTTCAGCTTTTGCAAGTCAGAAAGGTGAGGTAACGAAGGAAGGCATGCCACAAGTTCTGTCTGAATCTTATGAAGATCAGCGTTTCTCAGCACATCAGGTAAATGCTGCAGACTTTGAAGATCTACTACATTTGGAACTTGTGTTGCGGTGTATATGGTAAGAACAAGAAAGATGAAAAATCCTATCAAGTGCCTGAGTTCACAAATTAAAAAACAGCTTTAGTATATCAGGAAAAGTAACTTAGCAGACGTATTCCTGCATTAATCACATTGATAACTTTTTTACATAAAAAAATGTCGCCTAGGAGTTGCACTTGCCACAGTCATAATTTTCCAGAATGCATACATCTCCATACGAGCACATAACTTTTAAATAACAGTAACCAAATAAACGTTGTATGATGCCAATCAAATTGCTTGATCTCCATTCGAGCTCGATATATATATGCAACGAATACAATAAAAGAAGGGGCTGTCTATATATCATGTGACAAAAAATGCCACCTCCTATTATTCGAATTTTGGACCATTGGATATGCTTCAAGATTTGTGTAGACCACTCTAACCCTAACTCCTCTCCTCTTCCCCCAATTCAGATCGCACGCTGCCGCCACTCCTCGTCCTCGCGCGATCCCCCACCACTGCCACCGCCATCGCCCCACCGCGCCGCTGCCCGCCTCGCCGGCTGGCCGGAAGGGGTCAACGGCGCCGGCGAGGCCCCCTCCCCCTTCCCTCCTCTCTTTCTCCTCGAGGCGGCGACGACGAGGTGCCCCCGCCCCGCCGTCTTCCCCGTCTCCGGCGGCTCCCTACCGCCGGATCCGCAACCACCGCCCGCCGCCTCCTAACCACACGCTTGCTTTGCCCCCGCCGCCGATGCCGGCCCACCACCCTCCTCCATCCCTGCGGCTTCGGCGGCGCCGCCACCGCCTCGCCGAAGTACACCGCCCACGGCCATCCCTCTAAGCTCCGAGGAAACCCCCCTCTTCCCCCTCCCCCAACCCCCCTCCTACCCTCACCCCAACCCCAGACCCTAACCCGTATGCTCCCTGCCGGAGTTGGGGTGTCGCCGGCGCCGGAGAAGAAGGGGAGCCCGCCGGAGTTGGAGGAGAGAAGGTGGTGCACGAATCTTGGCATGGATCCAATGGTCCAAAATCTGTAAGATTTCATCCCCAAATTTCATTCGAATGACATATAGCAATCCCGATAAAAGAAATACTGCTAGACCACTGTCCTCCATTAACTACTACAATTAAACGCATTAAATCATCCACAGGGGACTTCTTTCAATAAGTTAGGTGGTCCTGTGACCTGTTGCATGATATGAACAGTCAAGTACAAAACGAAGGCTTTTCCAGCTGGGAGTCGTCCCTCTATTGCATTCTAGTTGTTGAAGTTCCTTGCCCGTTTCTTTCAAATTAATGTCAGCTTGCAACATGAGAATCCATATGAGCAAATTGAGTTTAGTCTTTAAAGTAGAGAGAAAGGTAGGTAAATTGAATACCAGACTGTTTAGAAACTGTAAGCCTTGGCCTCCCTAATTTACACAACTACAAAACTATGCACTATTGAGAATATTCAAATAAAATAAATAAATAAATTAGTAAATAAGCACAAGAGCAAAAATCTACAGAATGGCTAGATATTTTGAGGGCAGCCTAATATTTCAAGATTCAGACTTCAAATACCCAATGCCAGAAGAAATATGTTGTATGGGATTTATCCAGCCTGAAACATAAAGCTATAGCATCCACAAGCAGACAAGAGATGTTTCGAACGCCCGATCTATAGACCAATTTCTTTGCTCCGTATAACAGATCCATCCATGAAAGAAATCGATGTCACATCTCCTTTCCACCGCATTACCCGTGCAATGAACAACTTAACCTCCTTCTCACATGACAGGAAATTCAACCGCACAATCAATCGAGAGGGGGGGAGGAGAGACGGAGAAAGGAACGAGGGAACGTACGTCCAGACGTTGAGGGTCTCGTTGTGGATGGAGAAGGCGGAGAGGAGCACCTGCGGGAGCGGCCACTCGCAGCGGTAGTGGCGCAGGATGTACTCGTTGTCCCGCATGTAGCCCGGCAGCGCCCGGTACTCCACAAGCCCGTACCTCCGCCGCCGCCGCAGCCCCTCCTTCCTCTCGTCCTCCGCCTCCGCCCACCGCGCCGCCTCCACCTCCTCCCCCGCCGCCGCCGCCATCGCCAGGAAGAGAGAGAGAGAGAGAAAGAGCGCGCGTCCCGGGCGACAATGGTGTTATGCCGTTGCCGCTCGAATATTCGCCGACCACGCGACGACGCGACCGAGAGGGAAGGGAAGGGAAGGGGAGGGGGTTTTTTTGTACGCGTTGCCCCCCGCCCGCTCGATCGCTGGCTCGCCTCGGTTGCGTCGGCCCGTCGGTCTCGGCGAGGGGGCCGCGCCGCGAGTCGGAGATGACGGAGACCTCTCCCCGATTTAGCCCCTCCTCCCCTCTCCCCCCGCTCTGGCCTTCTGACGGCGCCGCGTGCGTGCGTGCGTGCGCTCGTCGATCACCTTGGCCTTTCCTGGGCTTCTCTCTCTTGGCTGCCGGGGCGGTGCGACGCGAGCGCGACCGGTGTTGGGGTTGGGGTTTGGTGCCGTACTGTCGTGCCGTGTCGTTTGCTCGCTCGCCTACGCCTCTGCGCGC
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| CDS seq | ATGGCGGCGGCGGCGGGGGAGGAGGTGGAGGCGGCGCGGTGGGCGGAGGCGGAGGACGAGAGGAAGGAGGGGCTGCGGCGGCGGCGGAGGTACGGGCTTGTGGAGTACCGGGCGCTGCCGGGCTACATGCGGGACAACGAGTACATCCTGCGCCACTACCGCTGCGAGTGGCCGCTCCCGCAGGTGCTCCTCTCCGCCTTCTCCATCCACAACGAGACCCTCAACGTCTGGACGCACTTGATAGGATTTTTCATCTTTCTTGTTCTTACCATATACACCGCAACACAAGTTCCAAATGTAGTAGATCTTCAAAGTCTGCAGCATTTACCTGATGTGCTGAGAAACGCTGATCTTCATAAGATTCAGACAGAACTTGTGGCATGCCTTCCTTCGTTACCTCACCTTTCTGACTTGCAAAAGCTGAAGGATGAATTGAAAAGCTCATGGAATTCAATTGAGGTGCTTCCATCATTGTCCCGTTGGCACCTCTTGGAGTTACTATCAAGTTGCTTGCCGCACAGATTTACTCATTCCAATGAAACCAGTCTGTCTGTTCTTCAAAGCATGAAGGAAGATATAGCAAACATGATTGCGCCACAGTTGATTAGGCCAATTCCGAGATGGCCATTTTATGCCTTCTTGGGAGGAGCAATGTTTTGCCTTCTTGCCAGCAGCACATGCCATCTTCTCTCCTGCCACTCCCGTCGCCTTGCATACATTATGCTTCGCCTTGATTATGCAGGCATTGCTGCTCTTATCGCAACATCATTCTACCCTCCAGTATACTATTCTTTCATGTGCTATCCATTCTTTTGCAACCTGTATCTCAGCTGCATAACTATTTTAGGAGTGGCAACTATTGCTTTCTCTTTACTCCCTGTTTTCCAGAACCCTGAGTTTCGGACCATACGAGCATGCCTCTTCTTTGGCATGGGTGCATCCGGCGTGATCCCTGTCATTCACAAATTGATCCTCTTTTGGCACCAACCAGAGGCATTGCACACTACCGCATATGAGGTTCTGATGGGCCTTTTCTATGGCATTGGGGCACTGGTGTATGCAACTCGGGTGCCCGAGCGCTGGATGCCTGGAAAATTTGACATTGCTGGTCATAGCCACCAGCTTTTTCATGTGTTAGTTGTTGCTGGAGCATACACACACTATCATTCTGGACTGGTATACCTCAAGTGGAGAGACGTGCAAGGCTGCTAG
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| Protein seq | MAAAAGEEVEAARWAEAEDERKEGLRRRRRYGLVEYRALPGYMRDNEYILRHYRCEWPLPQVLLSAFSIHNETLNVWTHLIGFFIFLVLTIYTATQVPNVVDLQSLQHLPDVLRNADLHKIQTELVACLPSLPHLSDLQKLKDELKSSWNSIEVLPSLSRWHLLELLSSCLPHRFTHSNETSLSVLQSMKEDIANMIAPQLIRPIPRWPFYAFLGGAMFCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVYYSFMCYPFFCNLYLSCITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHKLILFWHQPEALHTTAYEVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGAYTHYHSGLVYLKWRDVQGC |
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| Function | Heptahelical transmembrane protein ADIPOR3 [UniProtKB/Swiss-Prot:Q10PI5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0232900 | OsNip_03t0232900-01 | Chr03 | 7046913 | 7051263 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGGCGGCGGCGGGGGAGGAGGTGGAGGCGGCGCGGTGGGCGGAGGCGGAGGACGAGAGGAAGGAGGGGCTGCGGCGGCGGCGGAGGTACGGGCTTGTGGAGTACCGGGCGCTGCCGGGCTACATGCGGGACAACGAGTACATCCTGCGCCACTACCGCTGCGAGTGGCCGCTCCCGCAGGTGCTCCTCTCCGCCTTCTCCATCCACAACGAGACCCTCAACGTCTGGACGCACTTGATAGGATTTTTCATCTTTCTTGTTCTTACCATATACACCGCAACACAAGTTCCAAATGTAGTAGATCTTCAAAGTCTGCAGCATTTACCTGATGTGCTGAGAAACGCTGATCTTCATAAGATTCAGACAGAACTTGTGGCATGCCTTCCTTCGTTACCTCACCTTTCTGACTTGCAAAAGCTGAAGGATGAATTGAAAAGCTCATGGAATTCAATTGAGGTGCTTCCATCATTGTCCCGTTGGCACCTCTTGGAGTTACTATCAAGTTGCTTGCCGCACAGATTTACTCATTCCAATGAAACCAGTCTGTCTGTTCTTCAAAGCATGAAGGAAGATATAGCAAACATGATTGCGCCACAGTTGATTAGGCCAATTCCGAGATGGCCATTTTATGCCTTCTTGGGAGGAGCAATGTTTTGCCTTCTTGCCAGCAGCACATGCCATCTTCTCTCCTGCCACTCCCGTCGCCTTGCATACATTATGCTTCGCCTTGATTATGCAGGCATTGCTGCTCTTATCGCAACATCATTCTACCCTCCAGTATACTATTCTTTCATGTGCTATCCATTCTTTTGCAACCTGTATCTCAGCTGCATAACTATTTTAGGAGTGGCAACTATTGCTTTCTCTTTACTCCCTGTTTTCCAGAACCCTGAGTTTCGGACCATACGAGCATGCCTCTTCTTTGGCATGGGTGCATCCGGCGTGATCCCTGTCATTCACAAATTGATCCTCTTTTGGCACCAACCAGAGGCATTGCACACTACCGCATATGAGGTTCTGATGGGCCTTTTCTATGGCATTGGGGCACTGGTGTATGCAACTCGGGTGCCCGAGCGCTGGATGCCTGGAAAATTTGACATTGCTGGTCATAGCCACCAGCTTTTTCATGTGTTAGTTGTTGCTGGAGCATACACACACTATCATTCTGGACTGGTATACCTCAAGTGGAGAGACGTGCAAGGCTGCTAG
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| Protein seq | MAAAAGEEVEAARWAEAEDERKEGLRRRRRYGLVEYRALPGYMRDNEYILRHYRCEWPLPQVLLSAFSIHNETLNVWTHLIGFFIFLVLTIYTATQVPNVVDLQSLQHLPDVLRNADLHKIQTELVACLPSLPHLSDLQKLKDELKSSWNSIEVLPSLSRWHLLELLSSCLPHRFTHSNETSLSVLQSMKEDIANMIAPQLIRPIPRWPFYAFLGGAMFCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVYYSFMCYPFFCNLYLSCITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHKLILFWHQPEALHTTAYEVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGAYTHYHSGLVYLKWRDVQGC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.744513 | 1.104186 | 3.248846 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g13040 | RBH | 0.460674 | 0.679519 | 0.765216 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0232900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0009870 | RBH | 0.233672 | 4.820204 | 8.760742 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0009720 | RBH | 0.206773 | 0.917685 | 4.612148 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0009770 | RBH | 0.426045 | 4.910707 | 9.458923 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0009700 | RBH | 0.145353 | 0.186062 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0009590 | RBH | 1.196402 | 3.009670 | 9.307270 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0116300 | RBH | 4.660826 | 2.2361975 | 2.360893 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0009500 | RBH | 0.000000 | 0.299839 | 1.860836 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0088700 | SBH | 0.050451 | 0.3225905 | 0.048066 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0009600 | RBH | 0.261160 | 0.058814 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0009680 | RBH | 0.114215 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0009600 | RBH | 0.0 | 3.046143 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0009670 | RBH | 0.115420 | 0.595960 | 0.845337 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0009620 | RBH | 0.113916 | 0.277421 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G009600 | RBH | 0.0 | 1.502411 | 2.391917 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0009520 | RBH | 0.296602 | 4.950594 | 9.146348 |
