Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0211900 | OGI:03015810 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:5840714-5844831 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGAAAAAATATCATTGAGCACACTGGTTACATTACACCAGGACTGTCGGTGCCATGCAAATGTGCTGGCAATACAGCTGAACTGCATCTCCATTACACAGTAGTACTAAGTTACAAGAAATGCAATACAACCTGTACACTCATCTAATGAAAACATACTCTTGGATGACAGGATAGCAGCAGTGCTCTGGACTTTACAATTTTTTTTTCTTTTTCTGGTTTGCAAGTGGCCTTTTGTGTGTGTGAACTTGTCCTCGAACAGTGCTGTGAGAAACAGTGTCTGTACTACTGATACATATATCGTATATATCCTAAAAACATGCATACATTTTTGTTGGTGCATGCTGAGGAGATGTAGAACGGTAGCCGCTCTGCTATCGTCACAGAATAAACAGTTGTTAAACTAAGATGTCAGCATCAGGTAATTCAAGCACCTTGTGCGTTCCTTTTGATTTGCTTCCTGGTCTAAATTGGTTTCCTTCAATGTACCTGCATCAAAAAAAAAAAAAAGTGTGCGCCTAAGTAAACCTAAAACAGAGCAGATTCAAGTATGAAATAATAATGTCGTGAGAGTAGAAATTCTAAAGCCAGCTTACAGCTCCTTCAAAAATGGATGTTTGTATAATCCTTCAGGAATCCTCCCAATGAAGTTGTTATTGTCCAAGTATCTGTAAAACCATTGTAAAATGAGACATATGACATATCAGACCCAAGCTGATCAAATATTTCACTTTACATAAATATAGAAATCGAAGCAGTAAAGCTCACAAATAGGTCAATCTTGGAATATGAACTAGCTTTGGTGATATCGATCCAATCAGCCTATTATTAGACAAGTGCCTGCAGAGTATACATATGTAAAAGAATGACGTGATGGTTACAGGGTCTTGATACAGTGTTGACAGCAAAGTTTAAGAAAACTTACAGTATCTCGAGGTTTGTCAAATTTGCAATCTGGTCTGGCAGAACGCCAGTCAAATCATTATTGTTAAGATACCTGTAGAACACAGTTTACAGTAAGCTTAGGAAGACAGCATTTGCCATTCAGGAGAGAAGGAATGGATATGGTAGCTTGTAAAAAATCTGCTTACAGATTTCTGAGGGAGGGGAAACCATTCCCATTGCCAATTAAATCCCTGAGGGTGCCTATCAAGTGGTTGTTACCAACATCCCTGCAAAAATGGAATTCAGCATTCAGTAAGACAACTCAATAGACAAGCATGTCAATAGTTGGGGGGCAGTAAAAGGATCTGGGATGGATGTTTACAGGTGACGAAGGTTCTTGAGAGTTCCAAGTTCAGGAGGGATCCTCCCAGTAAAGCGGTTCTCATGAAGATACAGATAGCGCAGTTCTGGTAGGTTTGCAAGCTCCACAGGAATTTCACCTTTGAAGTTATTGAAGCTCAAATATCTGCATATTTTCAATGGCAATTAGAGGCACAAAAAATGAAGTATTATTTCCATATAAACTCAAGAATTCCAAAAAGAAAAAGAACTTACAAATGTGTCAGTTTCTTCAGTTCACCAATTTCAGGTGGGAGCACATCCTGAAGCTTGTTCCACCTCAGGTTCCTAAGAACATGAGACAATTTGATTAGCTGAATAGAATCTGTACTCAAGAACAGGCAGCTATCTAGCCAATAACCAACATAGTAATATTGATTCAATAAAGTATTATCTGAGGCTGAGGAATAAAGAGCATAAACAAGTATGGTTTATGCATCACAAATTAAAATGTTTTCCAGAGCCAGTATCTATTCTCAGGATGACAAGCATATCTTAATCTAGCTCTGCATACACAAAGACAATCCATACTTACAATATCCTGAGGTGTTTCAGCCGTCCAATCTGTGGGGGAATGGGCCCTGTCAACTTGTTATTGTGTAGATCCCTGTAGTTGGAGTAGTCATTATTCACATGGTTTAAAGGATTGCTTAAATATGCAAGATATGGTCAAATTACAAAGATACTTACACCCTTTAAGGTACTTGTTTTATAGAAGAATTGGTCCTGTATAGTTTTTTTGGGAAAATAAAATACTACTCAAATATATCCGCTGCAATATGCAAATGGAAGAAACTGTTTGTACATAGAATTCTGCAACTCAAGCAATATAAAAGCTCCATATTTTATAAGCTGAAGTGATTTAAAGAATAAATTAATTCTTCTATTATGGCTAATGTTCTCTCTAAATCCATTTTTCATGACACAGCCTATTACATGGAAACATAAATTTACAAGAGCGCATACATCTGCACAGATGTGTTCTATTGTAATTTCGCTGATGGTTGTACTAAAACTCTAAAAGACCAGAAACGTATAATTTATTATCGTTGCAAAGAAGGTAACTAATTAGACAATAACATTAACTCCACTCAGGTTGCACCAAATAATTACAAAGTACCAACACATGCACCTCAAGATAATTGTACATAATACGGGAACAAAGCAGTGGTGACAAGGAAAACATACTTACAATCTTTTTAAATCCAAAAGGTTTGTAACTGCTGTAGGGAAAGGACCGACTATTGATACAGCATAGACTTCACTGAAATAAGATAAGCAATATAGTTACTCAGATTTGTACATCAACAAACATATAATATAGCTTAACATAAGTTGCATGATTTTGCGGTTAATAGAGTTGAGATCCATATGCAGCAGCCATTGGTATTAGAACAGTTAAGAATTATTCTTGCCAACTATTTCAAAGCATTTACAGAAAAGAAATTTAAGGAACGAAATGGCATCATGTAAGAGGATTTTCTAATCCATTTTATGGCCTCATACACCAAAGCTTTATATCTGGCATACACAAGAAAGCGTGGTCAGGTACAGTTCTTCAGGTTGAGGTTGCATATTTAAGACTCAGCAAGAAACTATTAAAATTATGAATTTTGTGTAGCTTTGAGCCTTTTACTAAGATTCCTCAGACAGCTACAGCATGAAGATAAAGGACTTAATCAGCTAGTTTCCACATCAAATCAGCAAGCAAGAAATATCATTGCACTTTTAATTAACTAGGGAGTAAAAGAGTGTTTCGGATGTTGGAGCAGCCAAGCAAGACAAAAGTTTTGACCTTGGAGACCATAAGTGACAAATGTTTTTCCCCACTCGGAAACAATCAATCTACGAGCAGATTTGTATTCTTTCACATAGAAAAGGCAATACATAACAATCTAAAAATCCTTACAGATCCTTATGTATGTCAGCAGAAAATTTTAAGATCAAGAAATTGAAGACGTGTTTCTTACAGTTCGGTGACAACTCTGTAATCTCCTTGCTGAGAACAGGTCACACCAGACCAGGGGGGCAGATCACCATGCCCGCAAGGGTCATCACCAACCCATGAGTAGACAACTCTCCATCCTAACGAAGATTTGATCTCATTCAATGCTTTCACTGCAGCATAAAAAATTGTTTTCTTTCAGTCGGTTCCAACATTCTACGAACCATGAAATTACTCAATGGCCGCCAAACATTGTTAAGTCAGACTAATATCCATGTCTCTATGAAGAGATAAACCTCTCCACCTGATGCAGTGTCAGTCAGTGTGGAGCCTAATTAGTATACAGCTAGGAAATGGCAAAACTAGATAGTCACATGTATACAATCACAGAGTAATTTAGACATCTAAGACACAAGCCAACAACAGATCCCAATGCTACACACCCCAAATGAGGCAGCTAACCGATCGAGCAGGTGCCCAATTCACAGCCATGAGCATAAAAGAATGCAAGGCACCAGATGGTCAGATCTCCAGCAGGGAACGGCCAAAGAAACCAAATCTTTCCCAAATTCCATGTCGCGGAATCGCGCATCACGAGACCAGTATCACTCGCTCAATTCACGGGGGGGAAAGAAAAAAAAAAGAAGTGCAGAGAAGGATGAGCGGAGCAGCCAGCTACGTACCGTCCCTCTTGACCGTCTTGCCGCTTGCGACGCCGGCCAGGACGAGGAGGAGGAGGAGGAGAAAGAGCGGGCGGACGGGCAAGAACCGGGGGGCGGCGGCGGCGGCGGCCATGGACGTGTGGGGAAGCTGCGGCTCCGCGCTAGGATGGACAGTAGCGGGGCGCGCCGCGGGAGACCATATGAGAGAGAGAGAGAGAGAAGAGGAG
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| CDS seq | ATGGCCGCCGCCGCCGCCGCCCCCCGGTTCTTGCCCGTCCGCCCGCTCTTTCTCCTCCTCCTCCTCCTCGTCCTGGCCGGCGTCGCAAGCGGCAAGACGGTCAAGAGGGACGTGAAAGCATTGAATGAGATCAAATCTTCGTTAGGATGGAGAGTTGTCTACTCATGGGTTGGTGATGACCCTTGCGGGCATGGTGATCTGCCCCCCTGGTCTGGTGTGACCTGTTCTCAGCAAGGAGATTACAGAGTTGTCACCGAACTTGAAGTCTATGCTGTATCAATAGTCGGTCCTTTCCCTACAGCAGTTACAAACCTTTTGGATTTAAAAAGATTGGATCTACACAATAACAAGTTGACAGGGCCCATTCCCCCACAGATTGGACGGCTGAAACACCTCAGGATATTGAACCTGAGGTGGAACAAGCTTCAGGATGTGCTCCCACCTGAAATTGGTGAACTGAAGAAACTGACACATTTATATTTGAGCTTCAATAACTTCAAAGGTGAAATTCCTGTGGAGCTTGCAAACCTACCAGAACTGCGCTATCTGTATCTTCATGAGAACCGCTTTACTGGGAGGATCCCTCCTGAACTTGGAACTCTCAAGAACCTTCGTCACCTGGATGTTGGTAACAACCACTTGATAGGCACCCTCAGGGATTTAATTGGCAATGGGAATGGTTTCCCCTCCCTCAGAAATCTGTATCTTAACAATAATGATTTGACTGGCGTTCTGCCAGACCAGATTGCAAATTTGACAAACCTCGAGATACTGCACTTGTCTAATAATAGGCTGATTGGATCGATATCACCAAAGCTAGTTCATATTCCAAGATTGACCTATTTATACTTGGACAATAACAACTTCATTGGGAGGATTCCTGAAGGATTATACAAACATCCATTTTTGAAGGAGCTGTACATTGAAGGAAACCAATTTAGACCAGGAAGCAAATCAAAAGGAACGCACAAGGTGCTTGAATTACCTGATGCTGACATCTTAGTTTAA
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| Protein seq | MAAAAAAPRFLPVRPLFLLLLLLVLAGVASGKTVKRDVKALNEIKSSLGWRVVYSWVGDDPCGHGDLPPWSGVTCSQQGDYRVVTELEVYAVSIVGPFPTAVTNLLDLKRLDLHNNKLTGPIPPQIGRLKHLRILNLRWNKLQDVLPPEIGELKKLTHLYLSFNNFKGEIPVELANLPELRYLYLHENRFTGRIPPELGTLKNLRHLDVGNNHLIGTLRDLIGNGNGFPSLRNLYLNNNDLTGVLPDQIANLTNLEILHLSNNRLIGSISPKLVHIPRLTYLYLDNNNFIGRIPEGLYKHPFLKELYIEGNQFRPGSKSKGTHKVLELPDADILV |
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| Function | Probable leucine-rich repeat receptor-like protein kinase At1g35710 [UniProtKB/Swiss-Prot:Q9LP24] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0211900 | OsNip_03t0211900-02 | Chr03 | 5840714 | 5844806 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCCGCCGCCGCCGCCGCCCCCCGGTTCTTGCCCGTCCGCCCGCTCTTTCTCCTCCTCCTCCTCCTCGTCCTGGCCGGCGTCGCAAGCGGCAAGACGGTCAAGAGGGACGTGAAAGCATTGAATGAGATCAAATCTTCGTTAGGATGGAGAGTTGTCTACTCATGGGTTGGTGATGACCCTTGCGGGCATGGTGATCTGCCCCCCTGGTCTGGTGTGACCTGTTCTCAGCAAGGAGATTACAGAGTTGTCACCGAACTTGAAGTCTATGCTGTATCAATAGTCGGTCCTTTCCCTACAGCAGTTACAAACCTTTTGGATTTAAAAAGATTGTAA
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| Protein seq | MAAAAAAPRFLPVRPLFLLLLLLVLAGVASGKTVKRDVKALNEIKSSLGWRVVYSWVGDDPCGHGDLPPWSGVTCSQQGDYRVVTELEVYAVSIVGPFPTAVTNLLDLKRL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0211900 | OsNip_03t0211900-01 | Chr03 | 5840929 | 5844831 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCCGCCGCCGCCGCCGCCCCCCGGTTCTTGCCCGTCCGCCCGCTCTTTCTCCTCCTCCTCCTCCTCGTCCTGGCCGGCGTCGCAAGCGGCAAGACGGTCAAGAGGGACGTGAAAGCATTGAATGAGATCAAATCTTCGTTAGGATGGAGAGTTGTCTACTCATGGGTTGGTGATGACCCTTGCGGGCATGGTGATCTGCCCCCCTGGTCTGGTGTGACCTGTTCTCAGCAAGGAGATTACAGAGTTGTCACCGAACTTGAAGTCTATGCTGTATCAATAGTCGGTCCTTTCCCTACAGCAGTTACAAACCTTTTGGATTTAAAAAGATTGGATCTACACAATAACAAGTTGACAGGGCCCATTCCCCCACAGATTGGACGGCTGAAACACCTCAGGATATTGAACCTGAGGTGGAACAAGCTTCAGGATGTGCTCCCACCTGAAATTGGTGAACTGAAGAAACTGACACATTTATATTTGAGCTTCAATAACTTCAAAGGTGAAATTCCTGTGGAGCTTGCAAACCTACCAGAACTGCGCTATCTGTATCTTCATGAGAACCGCTTTACTGGGAGGATCCCTCCTGAACTTGGAACTCTCAAGAACCTTCGTCACCTGGATGTTGGTAACAACCACTTGATAGGCACCCTCAGGGATTTAATTGGCAATGGGAATGGTTTCCCCTCCCTCAGAAATCTGTATCTTAACAATAATGATTTGACTGGCGTTCTGCCAGACCAGATTGCAAATTTGACAAACCTCGAGATACTGCACTTGTCTAATAATAGGCTGATTGGATCGATATCACCAAAGCTAGTTCATATTCCAAGATTGACCTATTTATACTTGGACAATAACAACTTCATTGGGAGGATTCCTGAAGGATTATACAAACATCCATTTTTGAAGGAGCTGTACATTGAAGGAAACCAATTTAGACCAGGAAGCAAATCAAAAGGAACGCACAAGGTGCTTGAATTACCTGATGCTGACATCTTAGTTTAA
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| Protein seq | MAAAAAAPRFLPVRPLFLLLLLLVLAGVASGKTVKRDVKALNEIKSSLGWRVVYSWVGDDPCGHGDLPPWSGVTCSQQGDYRVVTELEVYAVSIVGPFPTAVTNLLDLKRLDLHNNKLTGPIPPQIGRLKHLRILNLRWNKLQDVLPPEIGELKKLTHLYLSFNNFKGEIPVELANLPELRYLYLHENRFTGRIPPELGTLKNLRHLDVGNNHLIGTLRDLIGNGNGFPSLRNLYLNNNDLTGVLPDQIANLTNLEILHLSNNRLIGSISPKLVHIPRLTYLYLDNNNFIGRIPEGLYKHPFLKELYIEGNQFRPGSKSKGTHKVLELPDADILV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr03 | 5842533 | 5843261 | - | OsNip_03t0211900-02 | OsNip_03t0211900-01,OsNip_03t0211900-02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.654514 | 0.747185 | 3.271265 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g11340 | RBH | 0.927057 | 0.651713 | 0.799320 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0211900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0008240 | RBH | 0.704455 | 27.311090 | 11.474374 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0008210 | RBH | 0.153851 | 7.804233 | 3.930293 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0008290 | RBH | 0.772400 | 36.037975 | 16.572962 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0008280 | RBH | 0.042677 | 1.162099 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0008150 | RBH | 6.382474 | 66.971107 | 21.809336 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0098700 | RBH | 5.6362455 | 33.3567905 | 9.4370145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0008090 | RBH | 0.054235 | 1.451940 | 2.411417 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0099400 | RBH | 5.612283 | 18.422434 | 16.084815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0008110 | RBH | 0.037899 | 0.371322 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0008180 | RBH | 0.436888 | 17.574900 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0008160 | RBH | 0.000000 | 34.573036 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0008170 | RBH | 0.397691 | 3.027708 | 1.412808 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0008140 | RBH | 0.070698 | 13.849082 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G008180 | RBH | 0.093324 | 12.793820 | 3.431563 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0008050 | RBH | 0.699825 | 23.206018 | 4.214726 |
