Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0196400 | OGI:03013660 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:5034168-5040481 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCATCGCAGCTATCAGCGCCACTCCTCTTCAATTCTCACGCACTCTCCGCTCCAGTGACACACACACACACGACCGCTCGCTCGTTTGCCTTGCTGCTGCCTTAGCGAGAAACCGGGAGTTAGCGAGCGAGCCGTCGTCGCCGGCGATGAGGCAACAACAAGCGGGAGGAGTTGGCGACGGGGTGAGCCCGGGCAATGTCCCCGTGTGCTACTACGGGCCCGGGGGCCGCGTGCCGTCGTCGCTGGAGCGGCGGGCGCGCGCCGCCGAGGTGCTCCTGCGCTGCGCCGCCTGCGGCCTCGCCGTGCTCGCCGCCGCGCTGCTCGGCGCCGACCGCCAGACCCGCGTCTTCTTCTCCATCCAGAAGGTCGCCCGGTACACCGACATGCAGTCCCTCGTGTAAGCCTCCCTCCTCTCGATCCCCTCCATGTTTGTAGTAGCAGTAACTTTTCTTTCCTGCTTGACTAGTACTTAGTCACTTGATGATGATGAACGCAGCAGCAAGCCAGCAACCGAATCTTTAATAAACTGTTCCAAATTTGTTTTGCACGGAGCCAGCCTCACATGCAAGATGAGGTGGCTCAGAGCACAGTAGTAATATTATCTCAAAATTCGTTGTTATGTGCTACAGTTATTTGCTTCTCACTGGTCGTTGATAGGAGCCAAAGATTCTTGCTACTACCTTTTCATGAACAGTGTGTGCCTTGGCAGCCTTGCCTTTGTGGTTGTTTAATTTGCGTGTTGCTCATCAAGTAACCAATCCCCGGTAATTCGGTCCATGTCCTAGTATGCTAGTACCACTTCCTTTCTAAGGCAAGCGTTAGAGAAAGCCTCCTTAATTTGGTACACCGATCACCTCTCTCCATGTGCGGTGAAGAGCACGGCGAGATGAACTGGTGATTTGTTGTGGTGAATGGTGTGATAGAGTCGTAATCGTAGAGAAGCTGGAGAGATTAACGGCGAGGAAAGAGTGCCAAGTGCGAGGAGATGAGATGGCCAGCCAAGCGTTTCGTACGTGGAGGGAGGGGGAAGCAGCCACTTTTAAAGCAGCAGGCGCGGCACGGTTGGGCCATTTTACTGCCCTGTCGTTGGAAGGGGGTCCCTGCTGCTTGCGTGGCTGCACCACCACACGAAGCTCACAAGTCCGTTTCATTTTAGCCTTGGCTCTGTATCTGCATGTACACGAAGCAGAGGCTCTGCTGCATCAAAGAGGGTCGTAGAGCCGTACCAAAAGTTGGAAAGCTCCATTAATGGCACGGCCTGTCCTTGATGGAGCCACACAGGAGAGAAGAGAAAGAGCTCTCTCTGTGTGTTTTTTTTAACCTTTTCTTTTCTGTGGAGTGAAATAGTGCAAGTTTGTTTTTCTATCCGGATCGGTGCTTGAGTGTGAGTAGTGACGATCGGCACCTACCACGTGGTGGCTGCTCAATGCGGTCTTGATGGTTAGATCATTCATGGAACGTATAAATGCATAACCTACTTCTCGCCGACCGGCACGGTTGGAGAGGGTTAACCCTCTTTTCTGTAGAACTTGTCGGTAGAATTCTGGTCAAAAATGTGCTCACACAGTTCACAGGTAGTAGTAAGGCCAGTCCCTATCCAAGACACTAGACATAGTTTTTATAAACTCCACATCATCAAGAAACTAGTACTACTACTAGACACTACTCTTTCAATGCAAACATCACTTTTCCATATTTAAATTTAATGCTACTTATCTCTTAGAGCACCCGCAATGGTAAAGTAAGGTGCTATCTATAAAACATGTACATCTCAGTAATAGACTAGATTAATAGTAAACCACTTCAATGGTATGTCTACATGGGTATCTATAGCTCTCTAATTCATTGCCTCGTTTTTCTCTATAGACTATCTCCAGATTAGTAGATAGCTTTGCTCTCTCTCTTCATTTAATCTCTTCTAAGTAAGAAAATATGCTGACATGGATATCTTGTAGAGAGCCTATAGATAACCATTGCGGGTGCCCTTATGATGTCTTGGATATTGTGTAGAAACCATATCTCATGCAAGATCTGGTTTTCTTCTTTTTTTTCTCATTTATTCACTTGCCACATCATCTTTCATTCTAGGTGACGGCTTATTTAATGCTATGGACACCATCCTAGTCATTGGGTTGGCCTAGTAGTAGTAGTAGTGTTTTTAACCTTTTGTCAGAATGATTCAGGGTTAATAATGGACCCTCCATGCAAAAATATAGGGGCGTCTTTGACGGTCCAAAAACAAGTTTCTATCGTAAATTTCTCTTACGCTATTTTGCTTACTGTGACAAAATCATACTACTAGACATAAGAAGGTACTTTCGAACATGAAATTCAACAATATTTTTTTATGGAAACATCTAAATAGTATTGGATCCATATGTGGTTAAAAATCTTGCGGATTTTAGTCCAAAAAAGGGTGGTTAAAACTCAAAATTGGATGGTTAAAATAAGTCTTGTACTTCTAAACAGTGGGGGTAAAATAAAAATGATATTGACCTGTACCATTCTTATGACAATTTTTTTTCATACCATCTTTTTTCATATATTTAGTACTGTGTGCGTACAATGGCTTTGAACATCTTTTCTAACGGAAAGGAGTAATAAATGCAGTCCAAAAAGAAAATGCAAGTCATGCATCAATCCATGATCAGTGATCCAGCATGTATGCCGAGTGGCGACCACCATTGATCCGTATTTATTTCTTTTCAGATTTGTGCTCCATCTGTCTACGTTTTGTAGTTACTGTTTCAATTGCTGTCCACATTAACACCCGTAAGCAGGACCATCTTCCCAAGGGACCATGGAATCGTGTACCGTTCAAAGCACTGACATACTATTGAGAAGCTAACCTAGATAGCTAGGACACAGAGTATAAAATAAAATACTACTCCCTTCATCCCAAAATATAAACCACAACCACTATTTTCCAATGTTTCATAATACAATTCACGCATTCATGTATGCAATTAGTTAGCACTTTTCTCTTCTTTTAATTTGTTTTTTGAAATCCTCTCTCTGAAGATCTATAATCCCATTGTATATATGAATTGTGTTTATTGGATTGGTCCAAATGAGAAGGTGATAATAATTCGTTCTTGATCTATACGTTAGTGGTGGTTGGACGTTATATTTTGGGATGGAGGGATTACTACTTATTAGGCAGCTGTGGAGGATAGGCCAGTGATATAATCATCTTCTTGTCTTAAAAAAAAGTTCCATTGCAACATGGAGTAAATATAACTGTAATAGGCACCGAAAAATAACCATGTTTTGCTTAAACTCTTTAAAAAAGTAATTTGAATAACTTCATTGGAAACACAAGTTTGATCAAGGAGCTAGCTATGGGACACGATGGTAAATCTTGCTTTCTCTGATGCAGGCTCTTGGTGATAGCAAATGGGATGGCTGCGTGTTATAGCCTAATCCAGTGTGCAAGATGCTTGGTGAGCATAGTGAGAGGTGGTGTCCTTCTCAGTAGGCCCTTGGCATGGGCTATCTTCTCTTGTGATCAGGCAAGTAGCTGCTAATGTCACAATCAGCTTTTCATGTCATTTGTTTGCTTCTGTTATTTTCTCGCATGTGTGTTTGTCACTATCAAGAGGTGACTTTTCAGCTATGATGACTACATTTTGGGTGTATATAAATGCTGATGTTCTGTACTATAGCTCTGAAATTAGGAAACCCTTTCTAGTGAGATATAATCTTCAAGGATAGGAAAGCCTTTTTACTCAGACATTCCATCTTCATAGGAATTAGGAAACCATTTCTAGGGGGTGTTTGGGAGAGGGGCTAAAATTTAGCCCCTCTCTCAAAAACATAAGTCCCTCGGACTAAAGTTTAACCCCACTTTAGTCCCTCCAACCAAACACTACCCTAGTCAAACATATCGTGCCCAAGTTAATAATACTTACTTTCTTATCTAAGAGTATTTGTGCTACACCACCATGCACAATTCATGTAATCTCTATAGTTTTCCTTTGGATCCTTCCAGGTTGCATAGAACTGATTGGTATCACAGTAACCTATCAACACATATATCCCATGTCAGAAGAAGCAAAGGAAAAACATAAAATACATATACATATATTTTAAAGTTCAGGGTATGAACTTACATATAGAAAAAGTATCTATCTTTGATATACTTTCCTCCTGTTTCAAAATACTTGATATACTAGTAATTTCATAGCCAGCAGAGGTGATCTCAACCATTGATTTATAAGTTATACTACCATTCTACTACTATCAGTTGATGAGGTGATAGTCTAGACAGATACAATCCATTGGATTAGAAAGAAATGAACATTCTAGATTGATTTCTATTACTAGTAGAGACCATGGTAAACATCTCATTTTTACTATTGAAATCAAATTTAAAAGTTTGACCATTGATATTTTCACATTATTCAGTAAGTATGCATTGTAACTCACATGGTTACATTGTTGTGCAACGCACATCGACGAAACTGTACAATATTAAGTATTCACAAATTTAGTCATAAAAAGTAGTGGCCGAAATTTGTACAGTGAGGTCAATGTTAAGTAAATTAGATATTGACGGATTAATTGAACCTTTCATTTGTGGCGCATTAAACATTGGTATCTAACATAACAGTACAGCAGCTCACATGTCACGATCAAACCGTGTAACTAGATATTGATATGTTTGGTCAAAATCGATAGACTCCCTCTCATTTCAAATTAACTGTAGATGTTGATTAGGTTTATTTTAGCTTTGACCATCAATAAACTTTAAACGTCTAGATCAATATGTACGAAAGTTTAATGAGTATATTTAGGATGCAACATACTTAGCTAATATAGAATACTTTCAAATATTTATACATTTTCTTCAAAAGAAAAAATGAGCGGACAAAATTTTAATTTGATAGTACCCAGTGACCAATATTTGAAGATGGTGTGGGTACCATTGTGAGAAAAAGAAAGAACGTTTTAAATAGCAGCTGGAATAGATGAGCAGAATGCAATATATTTTTCATTGATTTTATTGTAATTGAACACTTTTCAAGCTACAGCAAAAATATTATGAGTAGAGTGTTAGTACAATGGTTGCTCCTGCTAGCAATAAATGTGGCTAGCCTGTATAACAGCATGTGCTTTTGCTGTCTGAATTCAGAATCAGCGTTACCATCAACAAGCAGTGAGATGCACACAAAGCACTGTTAGATGTTTTTTTTTAAAAAAAAAGAAGACCTGTTTGGTGTTAGTTGGTGATATCAGAACCATCACGGTATAGCTTGGTGTTAATGCTAGAGCACTAGATCGTTCTGTTGCCTATTCTAGCATTAAATTATCAGAATACATCGTACTCTAAGCTCCAGGGCTGTGTCCATCTGAAAGTGACAGGAGCAGTTTTTACTTCAGTACGTCATTATCTAAGTTTCTTTACGTCATTATCTTCGTTTAATTACTCCGTATACGCGGTTGTAACGTTTATGATCAATGCTGATCGTGTTCCGTCTGAATTCGTATGGTTCTTTTGACTTCTTCTCCAAACTGTCAATAACACTTTTTTGTTCTTGCATCTGCTGCTACATGCGTGCAGGTGATGGCGTACATAGTGATCTCAGCGGTGGCCGCGGCGATGGAGGCGGCGCTGATCGGCAAGTACGGGCAGCCGGAGTTCCAGTGGATGAAGACGTGCCACCTCTACAAGCGGTTCTGCGCGCAGGCCGGCGGCGGCGTGGCGTGCGCCATCGCGGCCAGCGTGAACATGGTCGGCGTCGCGCTCATCTCGGCGTTCAACCTCTTCCGGTTGTACGGCAACAGCAACGGCGGCGGCAAGGCCACCACCACCACCATGGCGGGCGGCAAGTGAAGCGAGCCAGACCAAGCTGTTGCTTCTTCTTCCTCCTCTCGCTGCTGTACTGCTGCCTAGCTGCCCGTACTTCTCTCTCAGCTCTCGTAGGTTTTAACACCACAAGTAGCCATGGCCACCACCATTTGTGTTTTGAGCTTTTGGGACACGACCGGTGTATATGATGTGAAGTGATCCGCGGGGGGGGGGGGGGGGGGGGGGGGCGTGTTTGTAGTATTATATGATACTGTAATAAACAAGCGAGAAAGCGATGTATCAGTGTGGCCGCTGGCACGATGGCAGCAGGGCTAGCTAGGCAAATTTACTCGGTTAGGTGCTCGCTGCTGCTGCTGTGACAACCTTTACTCTGTTTGGTGTTCCAACTTCCAACTTGGAAGCCATTTATACTGGCTCGAGGCATGTGGTGTTTCAATTATGGGGTTGGGTAATTGTCCTAGTCTGAACAATAGACCGGTAAATCAAGTATGGTTGGCTCTTC
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| CDS seq | ATGAGGCAACAACAAGCGGGAGGAGTTGGCGACGGGGTGAGCCCGGGCAATGTCCCCGTGTGCTACTACGGGCCCGGGGGCCGCGTGCCGTCGTCGCTGGAGCGGCGGGCGCGCGCCGCCGAGGTGCTCCTGCGCTGCGCCGCCTGCGGCCTCGCCGTGCTCGCCGCCGCGCTGCTCGGCGCCGACCGCCAGACCCGCGTCTTCTTCTCCATCCAGAAGGTCGCCCGGTACACCGACATGCAGTCCCTCGTGCTCTTGGTGATAGCAAATGGGATGGCTGCGTGTTATAGCCTAATCCAGTGTGCAAGATGCTTGGTGAGCATAGTGAGAGGTGGTGTCCTTCTCAGTAGGCCCTTGGCATGGGCTATCTTCTCTTGTGATCAGGTGATGGCGTACATAGTGATCTCAGCGGTGGCCGCGGCGATGGAGGCGGCGCTGATCGGCAAGTACGGGCAGCCGGAGTTCCAGTGGATGAAGACGTGCCACCTCTACAAGCGGTTCTGCGCGCAGGCCGGCGGCGGCGTGGCGTGCGCCATCGCGGCCAGCGTGAACATGGTCGGCGTCGCGCTCATCTCGGCGTTCAACCTCTTCCGGTTGTACGGCAACAGCAACGGCGGCGGCAAGGCCACCACCACCACCATGGCGGGCGGCAAGTGA
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| Protein seq | MRQQQAGGVGDGVSPGNVPVCYYGPGGRVPSSLERRARAAEVLLRCAACGLAVLAAALLGADRQTRVFFSIQKVARYTDMQSLVLLVIANGMAACYSLIQCARCLVSIVRGGVLLSRPLAWAIFSCDQVMAYIVISAVAAAMEAALIGKYGQPEFQWMKTCHLYKRFCAQAGGGVACAIAASVNMVGVALISAFNLFRLYGNSNGGGKATTTTMAGGK |
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| Function | CASP-like protein Os03g0196400 [UniProtKB/Swiss-Prot:Q10QH3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0196400 | OsNip_03t0196400-01 | Chr03 | 5034168 | 5040417 | + | RAP2018-11-26 | ||
| CDS seq | ATGAGGCAACAACAAGCGGGAGGAGTTGGCGACGGGGTGAGCCCGGGCAATGTCCCCGTGTGCTACTACGGGCCCGGGGGCCGCGTGCCGTCGTCGCTGGAGCGGCGGGCGCGCGCCGCCGAGGTGCTCCTGCGCTGCGCCGCCTGCGGCCTCGCCGTGCTCGCCGCCGCGCTGCTCGGCGCCGACCGCCAGACCCGCGTCTTCTTCTCCATCCAGAAGGTCGCCCGGTACACCGACATGCAGTCCCTCGTGCTCTTGGTGATAGCAAATGGGATGGCTGCGTGTTATAGCCTAATCCAGTGTGCAAGATGCTTGGTGAGCATAGTGAGAGGTGGTGTCCTTCTCAGTAGGCCCTTGGCATGGGCTATCTTCTCTTGTGATCAGGTGATGGCGTACATAGTGATCTCAGCGGTGGCCGCGGCGATGGAGGCGGCGCTGATCGGCAAGTACGGGCAGCCGGAGTTCCAGTGGATGAAGACGTGCCACCTCTACAAGCGGTTCTGCGCGCAGGCCGGCGGCGGCGTGGCGTGCGCCATCGCGGCCAGCGTGAACATGGTCGGCGTCGCGCTCATCTCGGCGTTCAACCTCTTCCGGTTGTACGGCAACAGCAACGGCGGCGGCAAGGCCACCACCACCACCATGGCGGGCGGCAAGTGA
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| Protein seq | MRQQQAGGVGDGVSPGNVPVCYYGPGGRVPSSLERRARAAEVLLRCAACGLAVLAAALLGADRQTRVFFSIQKVARYTDMQSLVLLVIANGMAACYSLIQCARCLVSIVRGGVLLSRPLAWAIFSCDQVMAYIVISAVAAAMEAALIGKYGQPEFQWMKTCHLYKRFCAQAGGGVACAIAASVNMVGVALISAFNLFRLYGNSNGGGKATTTTMAGGK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0196400 | OsNip_03t0196400-02 | Chr03 | 5034168 | 5040481 | + | IsoSeq | ||
| CDS seq | ATGTCCCCGTGTGCTACTACGGGCCCGGGGGCCGCGTGCCGTCGTCGCTGGAGCGGCGGGCGCGCGCCGCCGAGGTGCTCCTGCGCTGCGCCGCCTGCGGCCTCGCCGTGCTCGCCGCCGCGCTGCTCGGCGCCGACCGCCAGACCCGCGTCTTCTTCTCCATCCAGAAGGTCGCCCGGTACACCGACATGCAGTCCCTCGTGCTCT
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| Protein seq | MSPCATTGPGAACRRRWSGGRAPPRCSCAAPPAASPCSPPRCSAPTARPASSSPSRRSPGTPTCSPSCS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.948655 | 6.826584 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0514300 | RBH | 0.0 | 0.0 | 0.751533 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g10030 | RBH | 0.000000 | 0.640084 | 1.808001 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0196400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0007090 | RBH | 0.0 | 0.0 | 2.048984 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0007070 | RBH | 0.300052 | 1.264193 | 2.872844 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0007120 | RBH | 0.0 | 0.0 | 4.132972 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0007110 | RBH | 0.000000 | 0.080583 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0006990 | RBH | 5.650924 | 0.0 | 19.436848 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0084000 | RBH | 10.700157 | 8.635308 | 65.7043 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0006910 | RBH | 0.075238 | 0.0 | 2.619649 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0084500 | RBH | 14.93241 | 2.132193 | 38.101208 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0006950 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0007010 | RBH | 0.338052 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0006980 | RBH | 0.0 | 16.196421 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0007000 | RBH | 0.0 | 0.0 | 1.645960 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0006970 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G007000 | RBH | 0.128091 | 0.0 | 3.125743 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0006820 | RBH | 0.0 | 0.0 | 11.263422 |
