Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0185200 | OGI:03011880 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:4470567-4476128 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGGAAACTGCTATGTTATTTTACGAATATCCAGACAACGTGTTGCAGTGAGACATTAAAATGCTATGCAGATTCAGGGTTGCCATAATTAACTTCTTCTCCCTGGTAAGACCTCGTCAAGCAAAAGCCAATCAACATGAGCTGCATCTGAATTCAATCAACAATGTTAGAAGCAGTTGTGTTCGCCTAATTTTTCTGAAGATCAATCTTGTTATCTGTTAGAGAGTAACAATAGACCCCCACTAATTTAAGTAGCAGTTAAGAACAAAAATAATAAATTCAGAGAGAAATGACAACTCCCATCTAACTCTGCTTACCTTGCAGAAGCACAATCCAATTATTCATTGAATCCTAAACCTACAGCAGGACACTACTATTAATATGTAGTTTAAATCATTAGTACTTTGTTCACTGGAAATTATGCAAAATCATAGATGGATTATTGATATTTATTGAACTAAAAGCATGATACATAACATTCTTGAACTTGGGTCCACATTCAACATGAATTGCTGTCACAGAAAAAGGAGAAAAAACAGAGTATGCATTCTGATGTGGCTGCCTTGCCTTGCCATCTAATGTATTCTGATCTGGCTACCTTGCATTGCGCCTGACACCAATCAATGGAAACCATGACACTAAGACAGAGAGGGCCATCTCTTACCGACAAGAAGGAACCATATCGGGGATTGCAATTTCTCTGTTCATCTCGAATTGCAACGGAGGAGTTGCAGGTGAATATGGCAGCGACTGTGCCATTTCCGTGGTCCATCCAAGATCTCATCGAACCTAGTATTTGTGCTTCTACACCTGCCATCCCTAATCGGCGGAGGAGATAGAGCTCAGCTGCTCAGGAGGCATCAGCAACGGTGAGGAGGCAGCCGACAGGGGGACAGACGCCAGCGATGGTCCACTGATCCGGCGAAGCGGCCGACCGCTCGAGGGGACGTAATGTCGGCGCGGGGCTTGCTGGTGGTGACGGAGCTGAGCGTGGTGCTCGGCACCGTGGTCACGCTCCTTGGACCCGTCAACCTTCCCTCCACCAGCGGGCGGCGCTCAGCCAGACATTGGTGAGCCGCTCGAGTTAGAGGCGGGCCTCTTCGTCACGGGCGACAGCGCCGGTGCGAACATCTCTAGCCCTAGCCATCTTTGACGACCCCCTCCACCATCGGCCTCGCTGTGGAACGTCTTTTCTAGATCTGGACACCATGTCTCCTCCCGATCTGCTCTTCCTCGACCTCGCGGCTTCGGACCGGTGCCATCGTCGTCACCTCCACCGCCGTCAACCTGGGGGACCACGCCGGCACTCCATCTCCGACTCCTCGCCGGCGATCGATCTCCTGACAGAAGGGGATGTGCAGGCCGGCTGCAAGAGCGGAAGAGAGGCGGCTAGGGTTTGGGAGGGTGGGGTGAGGGGTGGGCGCCGGCCGCCAGGTGGTAGGGTTGTTCGTTTTTACAAAAAAGGCCACTCACTTGTTGTTATTTAAAGTGCGGCCTATTTTTCGTTTTTTTTCTCTTCTTAGCATAAGATATTTCAGGTCTTGGAGGGCCTTAAAGTAAGAATACAGAACACATAAACGAAGACAAGGGACTTATCACAGATTATCAATAATAGCAAGGGCTTTTTTTGTAAAACGACCAGAGTCAACGCGGGCCTCCCGCTCGCTCGTGAAATTCGGCTGCCTGGAGTTTCGGGGCCGACGTGGATAGCACGGGAAACGGCCACGCCTATGCAAAACGCTATGGAGGCGCCAATCCAGGGCAGGTTTAAATTTAACCGCTGTCTCTAACTCTATCATATTAAATATCACGATCAAGGACAAGGTCACAAGGGCCATCAAGATTCTAAAATTTTATACACGTATACTAGGGCCTATTTGAAGGAAATCTACAGCAATTAGTTGCAGTCTTGTATTTCTAGACAAACTTTATGTCAAAAATCATTTCAAGACCGGAAGCACACCAGAAATAAAACTAGTGATCATTGGATCAGACACACAGTTTGCCAACTACAAACAGCTATCCTCACCACAACAATCATGGAGATTCACTCTAATGTAGACATGTATTGCAGTTCACTGCTGAAATGAATTGAGACAAAAATATCAATGTATCATGAAGCACTATATTCCCCCATAGAACATCATACCCCCCCAAAAAATACCATGTGCATTCAATGAGAACATACCTGGAAAGCTCAAAGCAAGGCTAGTGCAACAACCAGCTATTCCAGCATTAACAACTGCAAATGAAGAATTCATAATTAGTGCTATATATTCAACTACCAAGATGTTACATCTAAAAAACTAGCACGATGTTAACAGAAAATAGGGAACTAAAACAATGCACATACTGTCATCTTTGCCACGCAGCCTTCTCAACAGGCACACAACTAGACAATGGACGCCAGAGAGAACTGCAAAACTTTGATCCGATAAATTTATGTTATGAGCAAGGTGTCTGGATGATTTTCATGTACAGAAGAACTGAATTCACATTATCAATAGTTAACCTTGGCAGAGGACCCTGGGTGCTGAACAAGCCCTTAAATCCCCTCTTAGTGAACAAACCTTGTCCTGAATAAAGAATCCAGTACAGAACATAAAGATTTTACACGAGGAAAATAACTAGTTGCTACAAATGGCCTTAACTAATTCACATGTCTGGTACTTAACAAGATTAATAGCATCTTCATTGACATAAATATCAAAATTCAGATGAAGGAACCAAAGATTCCTCACAAGATGTGCTATTATCTACACATTCTAGATTTATTACAAATTCTTACAGCCATACTAGGTGAGTTTGAGGAGAAGGGGATTGAGAAGATTGGGAAGATACGCAAAACGAGGTGAGCCATTACCGTATGATTAATTGAGTATTAACTATTTTAAATTTAAAAAATGGATTAATCTGATTTTTTAAAGCAACTTTCCTATAGAAAATTTTTGCAAAAAACGCACCGTTTAGTAGTTTGGGAAGCGTGCGCGCGGAAAACAAAACAAACTATCTCTCTTTCTCCAGCTGCCGAACACAGCGTAAGAATAGGTTAGGAATGAACTTCCTTTGCATGACATGGAAAGGAACAAAATCTAAAACTAGAAAAAGTTCGTGATTACAACAACATAGACAACATGGGCAGCACCGGAAACACATAAACACTGAAACACAAGGGGGCAACGGAGAAATTGGGATAATACCATATCCAATGGTAGACACCAAATGAACTGTTGGTAGTGGATGCATGAGTGTTGCTGCACTCTGAAGCACGGTAGACAAATCATGATGACTAAAAGCAACTGCGCACATTGAAAGTTTTATTAGCATGCAATTTGTTTATTACCCAGTTAGAAGAGATGCAAATAGAAAGATTGCGTTGTTATCTTTTTAAAATGAAGCGTAGAGAAAAAAATCACAGTAACTAAAGAATGCTGGGCATTCATAACCCATTCTGTGCAGTTACAAAACAGAAGGTAGGTTATTGGTCATAGTCTCTGCCATCTTCGTAGGAAGAAATACCAGTACGAACAAAAGGTACATTATTGTGAAGAACAAAAACAACAGAGGCCACAGAGGTGGTGCATCTTTTGTAGCTATACAATTACTTGAAGGATGGTGCAACAAGAAATCAAGCTTACAGAAAAGGGTAGGTCTTACTTAGGCCTAACAGTCTAGCAGCCAGGTATTTACTTGCTGTCACTGTACAATATATGGACATAGCAAATAGAGCATAATTAGGCATAATTACTGAAACAGGGGATAAAAACATTTAAACATAAAAGGGGGAAAGGTCTATACATCCATGGTGGCAAAACCTGGGAGGTAATTAGAAATTCTCACACGGTACAGGGGAAGTATTAGGTGGATTTGTAGTGCAATTGATAAAGTAGGCAACCCGGCTGTTCAGGGGGTGAAATGGATTTTTTTTTTCTGTGACAGTCTAAAACTGACGCTCTGTATAGATTGTTCATGGTGTAAAGTAATAACTATTCTCTACTAACGAGCATGTCCAAATTGATGATGGGTTAGAAATAAGAAATATTACACTGCCCAGCACAAACAATAAGCTATCATTGATGATGAGTTATAATGCAGGCAAGAATAGCCAAAATATATACCTTCTTACATAGCTTGAACACGACTTTGTCCAGAAGGCTTCACTAACTCCTCCCTGTCAATCATCATCCTAACTCTCTTTGCATCCTCAACCATTCCGGCCTTTGCATATATATTTGACATAGTCACAAAATTTCCAGGGTTATCTGGCTCCAATTGAACCAGTTTCTCAAAAGCGATCTGTGCATGATCCACATCATGGTGCATCCTACTTCCAGATAACAAAGCACCCCATACAACTGCATTTGGTCTGATTGGCATCTGATCAATAAATCCAGCAGCCTCTCTGAACCTCCCAGCTCGTGAAAGCAAATCCACAATACAAGCACACTGCTCCATAGTAGGGATGAGGGCAGAATTTTCCACAAACCGCTCAAAAAGCGCAAGACCTTCATCAACCAAGCCACAGTGGCAGCATGCCATGAGCAGAGTTGTGAATGTCACTGAATCTGGCTGCATCCCACAACGCAACATTGCATCCACAAGTTCAAGTGCCCTCTCTCCATGCCCATTCTTTGCGAAAGCACCTATCATCACATTCCATGACACAACATCCTTCCGTTCAATCTCGAAGAACACATGTTCTGCATTGTCGACACATCCAACACGTGAATACATGTTCATCAACGCATTCCACAGAATTGCGTTTGAACCACTATCACCATGGTTTCTCACCATGTGCCCATGGACCTGTCTTCCAGACTCCAAATCACAAGCCCCCAGCACAGCAACCGCGGTACGGGCATTCCCTCGAACACCTCTTGCGCGCATCTCCCGGAAGCAATCCCACGCCTCGCCATTCATCCCGGCACCAGCGAACCCCCCAATCATCGCGTTCCAGGACACCACGTCCTCGCCGTCCATACGATCAAAGATCCTCTTGGCCGCGCTCACCCTCCCACACATCGCATACAGCGCGACGAGCGCCGGGCCGGCCGAGGCGTAGAAGGCCAGCAGTGGCGCGGTCTTTACCCCGTAGGCGTGCGCGGCGCGAGCGGGGAGGGAGGCGGATGCGCGGCGGCAGCAGGAGACGACGCAGGAGAGGAGCTCGGCGTCGGGGCGGGCGACCGCGGCGGCGGAGAAGAGGGAGAGGGCCTCCCGGGGGCGGCCGTGGCGGGAGAGCGCGGAGAGGATGGCGGTGTAGGATCCGGTGGAAGGGTGGGGGATGAGGGAGAAGGCGCGGAGCGCGCAGGGGAGGAGGCCGGAGAGGGAGTAGGCGGAGACGAGGGCGTTGGAGGCCGGGAGCGAGGAGGGGAGGACCCCCAGCTTGAGAGCGGCGGCGTGTAGGGTGGAGACGGCCGGGGCGGCGGCGCCGGGGGTGGTGGCGGCGGAGACGAGTAGGCGAGGGAGGGAGAGAGGGTCGACGGGAAGAGCGCGCCGCTCGCCGGCGGCGGGGGCCGAGGTCGAGCACCTGGCGCGTCCGAACATTGCGCGCTCTGTAAATCCC
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| CDS seq | ATGTTCGGACGCGCCAGGTGCTCGACCTCGGCCCCCGCCGCCGGCGAGCGGCGCGCTCTTCCCGTCGACCCTCTCTCCCTCCCTCGCCTACTCGTCTCCGCCGCCACCACCCCCGGCGCCGCCGCCCCGGCCGTCTCCACCCTACACGCCGCCGCTCTCAAGCTGGGGGTCCTCCCCTCCTCGCTCCCGGCCTCCAACGCCCTCGTCTCCGCCTACTCCCTCTCCGGCCTCCTCCCCTGCGCGCTCCGCGCCTTCTCCCTCATCCCCCACCCTTCCACCGGATCCTACACCGCCATCCTCTCCGCGCTCTCCCGCCACGGCCGCCCCCGGGAGGCCCTCTCCCTCTTCTCCGCCGCCGCGGTCGCCCGCCCCGACGCCGAGCTCCTCTCCTGCGTCGTCTCCTGCTGCCGCCGCGCATCCGCCTCCCTCCCCGCTCGCGCCGCGCACGCCTACGGGGTAAAGACCGCGCCACTGCTGGCCTTCTACGCCTCGGCCGGCCCGGCGCTCGTCGCGCTGTATGCGATGTGTGGGAGGGTGAGCGCGGCCAAGAGGATCTTTGATCGTATGGACGGCGAGGACGTGGTGTCCTGGAACGCGATGATTGGGGGGTTCGCTGGTGCCGGGATGAATGGCGAGGCGTGGGATTGCTTCCGGGAGATGCGCGCAAGAGGTGTTCGAGGGAATGCCCGTACCGCGGTTGCTGTGCTGGGGGCTTGTGATTTGGAGTCTGGAAGACAGGTCCATGGGCACATGGTGAGAAACCATGGTGATAGTGGTTCAAACGCAATTCTGTGGAATGCGTTGATGAACATGTATTCACGTGTTGGATGTGTCGACAATGCAGAACATGTGTTCTTCGAGATTGAACGGAAGGATGTTGTGTCATGGAATGTGATGATAGGTGCTTTCGCAAAGAATGGGCATGGAGAGAGGGCACTTGAACTTGTGGATGCAATGTTGCGTTGTGGGATGCAGCCAGATTCAGTGACATTCACAACTCTGCTCATGGCATGCTGCCACTGTGGCTTGGTTGATGAAGGTCTTGCGCTTTTTGAGCGGTTTGTGGAAAATTCTGCCCTCATCCCTACTATGGAGCAGTGTGCTTGTATTGTGGATTTGCTTTCACGAGCTGGGAGGTTCAGAGAGGCTGCTGGATTTATTGATCAGATGCCAATCAGACCAAATGCAGTTGTATGGGGTGCTTTGTTATCTGGAAGTAGGATGCACCATGATGTGGATCATGCACAGATCGCTTTTGAGAAACTGGTTCAATTGGAGCCAGATAACCCTGGAAATTTTGTGACTATGTCAAATATATATGCAAAGGCCGGAATGGTTGAGGATGCAAAGAGAGTTAGGATGATGATTGACAGGGAGGAGTTAGTGAAGCCTTCTGGACAAAGTCGTGTTCAAGCTATGTAA
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| Protein seq | MFGRARCSTSAPAAGERRALPVDPLSLPRLLVSAATTPGAAAPAVSTLHAAALKLGVLPSSLPASNALVSAYSLSGLLPCALRAFSLIPHPSTGSYTAILSALSRHGRPREALSLFSAAAVARPDAELLSCVVSCCRRASASLPARAAHAYGVKTAPLLAFYASAGPALVALYAMCGRVSAAKRIFDRMDGEDVVSWNAMIGGFAGAGMNGEAWDCFREMRARGVRGNARTAVAVLGACDLESGRQVHGHMVRNHGDSGSNAILWNALMNMYSRVGCVDNAEHVFFEIERKDVVSWNVMIGAFAKNGHGERALELVDAMLRCGMQPDSVTFTTLLMACCHCGLVDEGLALFERFVENSALIPTMEQCACIVDLLSRAGRFREAAGFIDQMPIRPNAVVWGALLSGSRMHHDVDHAQIAFEKLVQLEPDNPGNFVTMSNIYAKAGMVEDAKRVRMMIDREELVKPSGQSRVQAM |
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| Function | Pentatricopeptide repeat-containing protein DOT4, chloroplastic [UniProtKB/Swiss-Prot:Q9SN39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0185200 | OsNip_03t0185200-01 | Chr03 | 4470567 | 4476128 | - | RAP2018-11-26 | ||
| CDS seq | ATGTTCGGACGCGCCAGGTGCTCGACCTCGGCCCCCGCCGCCGGCGAGCGGCGCGCTCTTCCCGTCGACCCTCTCTCCCTCCCTCGCCTACTCGTCTCCGCCGCCACCACCCCCGGCGCCGCCGCCCCGGCCGTCTCCACCCTACACGCCGCCGCTCTCAAGCTGGGGGTCCTCCCCTCCTCGCTCCCGGCCTCCAACGCCCTCGTCTCCGCCTACTCCCTCTCCGGCCTCCTCCCCTGCGCGCTCCGCGCCTTCTCCCTCATCCCCCACCCTTCCACCGGATCCTACACCGCCATCCTCTCCGCGCTCTCCCGCCACGGCCGCCCCCGGGAGGCCCTCTCCCTCTTCTCCGCCGCCGCGGTCGCCCGCCCCGACGCCGAGCTCCTCTCCTGCGTCGTCTCCTGCTGCCGCCGCGCATCCGCCTCCCTCCCCGCTCGCGCCGCGCACGCCTACGGGGTAAAGACCGCGCCACTGCTGGCCTTCTACGCCTCGGCCGGCCCGGCGCTCGTCGCGCTGTATGCGATGTGTGGGAGGGTGAGCGCGGCCAAGAGGATCTTTGATCGTATGGACGGCGAGGACGTGGTGTCCTGGAACGCGATGATTGGGGGGTTCGCTGGTGCCGGGATGAATGGCGAGGCGTGGGATTGCTTCCGGGAGATGCGCGCAAGAGGTGTTCGAGGGAATGCCCGTACCGCGGTTGCTGTGCTGGGGGCTTGTGATTTGGAGTCTGGAAGACAGGTCCATGGGCACATGGTGAGAAACCATGGTGATAGTGGTTCAAACGCAATTCTGTGGAATGCGTTGATGAACATGTATTCACGTGTTGGATGTGTCGACAATGCAGAACATGTGTTCTTCGAGATTGAACGGAAGGATGTTGTGTCATGGAATGTGATGATAGGTGCTTTCGCAAAGAATGGGCATGGAGAGAGGGCACTTGAACTTGTGGATGCAATGTTGCGTTGTGGGATGCAGCCAGATTCAGTGACATTCACAACTCTGCTCATGGCATGCTGCCACTGTGGCTTGGTTGATGAAGGTCTTGCGCTTTTTGAGCGGTTTGTGGAAAATTCTGCCCTCATCCCTACTATGGAGCAGTGTGCTTGTATTGTGGATTTGCTTTCACGAGCTGGGAGGTTCAGAGAGGCTGCTGGATTTATTGATCAGATGCCAATCAGACCAAATGCAGTTGTATGGGGTGCTTTGTTATCTGGAAGTAGGATGCACCATGATGTGGATCATGCACAGATCGCTTTTGAGAAACTGGTTCAATTGGAGCCAGATAACCCTGGAAATTTTGTGACTATGTCAAATATATATGCAAAGGCCGGAATGGTTGAGGATGCAAAGAGAGTTAGGATGATGATTGACAGGGAGGAGTTAGTGAAGCCTTCTGGACAAAGTCGTGTTCAAGCTATGTAA
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| Protein seq | MFGRARCSTSAPAAGERRALPVDPLSLPRLLVSAATTPGAAAPAVSTLHAAALKLGVLPSSLPASNALVSAYSLSGLLPCALRAFSLIPHPSTGSYTAILSALSRHGRPREALSLFSAAAVARPDAELLSCVVSCCRRASASLPARAAHAYGVKTAPLLAFYASAGPALVALYAMCGRVSAAKRIFDRMDGEDVVSWNAMIGGFAGAGMNGEAWDCFREMRARGVRGNARTAVAVLGACDLESGRQVHGHMVRNHGDSGSNAILWNALMNMYSRVGCVDNAEHVFFEIERKDVVSWNVMIGAFAKNGHGERALELVDAMLRCGMQPDSVTFTTLLMACCHCGLVDEGLALFERFVENSALIPTMEQCACIVDLLSRAGRFREAAGFIDQMPIRPNAVVWGALLSGSRMHHDVDHAQIAFEKLVQLEPDNPGNFVTMSNIYAKAGMVEDAKRVRMMIDREELVKPSGQSRVQAM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.426382 | 0.121139 | 0.150908 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0185400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g08680 | RBH | 0.218215 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0185200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0006330 | RBH | 0.392309 | 2.709479 | 0.327417 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0006300 | RBH | 0.0 | 0.0 | 0.656450 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0006320 | RBH | 0.0 | 0.0 | 1.064826 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0006310 | RBH | 0.047447 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0006250 | RBH | 0.000000 | 2.296286 | 0.579464 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0073200 | RBH | 1.216558 | 3.286125 | 3.200831 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0006180 | RBH | 0.000000 | 0.000000 | 0.208123 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0073500 | RBH | 1.7520655 | 4.639942 | 9.3378395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0006210 | RBH | 0.042738 | 0.062893 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0006260 | RBH | 0.094167 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0006220 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0006240 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0006230 | RBH | 0.060908 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G006260 | RBH | 0.080941 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0006080 | RBH | 1.162967 | 0.0 | 0.000000 |
