Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0180400 | OGI:03011270 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:4210533-4212985 | ||||||||
| Gene Symbol | OsPAA1, PAA1 | ||||||||||
| DNA seq | GCAGCATACAAGTAAATCGTAGTAAATTCAACCACAACGATAGAGGATGATCCAACAAGTAAAGCTGATGACTGTTTTTTGGAGTTACATGAAATGGTTCACTGAATGTTTCTTGGCTGAACATGAAATAAAATGACACTGCTGAAAGACTAGAGTGCAGTGTGAAGCAGTAACATGTCCAACTTCATTGTAGCTCAGTCGCGCTCACTTATGGCTGTTAGGTGCTGATCGATCTCCTCTGTCGTGAGTGCTCTGAAAACACGATCATCTTTCCTCACAACACCGACCTGCCAAACGATAGTTTATCTGATAAGCACAGCGAAGCAGAACTAAAAAAACTTTCAGAAAAGACTTGCGTATAAACAACAGCATACCTCAATCTCGGTGGCCTTGAAATCTTCCTGAAGAACTGATTGCAATGCAGAAATTGCAATCTGGGATCATAGGACAAAATTAGCAAATAATAATCCAGTAAGAACAAAAGTAAATGACTGGAAAAAGACCTCGCAATGTTTACCTGGACAGTTTCCTCGTAGGAGAACTGTGGGTCATCCTTCATTTTCTTCTCCAGAAAATTTATTGCTTCCTGCTCCTTAAGACCGGCGCTAGTTGCCTGAGAATAGAATACCAGGTGTTAAAGGAAACAAATTTCTAATCGTCCAACAAAAGACAGAAGGCTCAACATTCGTTCAGCTGATAAGTGAACTACAGAATGAAAAAGGAAATATAGTTTAACACTCTAATGAAGCATACAGAAACTGTGTATACCTTATGTCCAAAGAAGTGACCTGCCGGGTCACATTTGAATAGTTGAGCGTTTTTCTCTTCGTCATAGCCCAAGACCATAGCAACTGTGGAATATACCAAAAGAAAATGAATATGGAGGGCAAATAAGATCCAAGCTGATTGGTTTAACATTAACTATAGAACAGAAGCCAATGGAACAATAGGTCACTTGATGATACGAACCTACTCCAAGGGGCCTCATGTAGGCATGCTGCGTGTAGACTTGTGCTTTGTCTGCTATCCTGAAACATAAACCAGAAAAGTTAGCTATCACTTTGTTATAAGAAATGCAAAGATCATATATTCAACCACAACCCTATTTTCACAAATAGAGAACTTAAGGATGAGACATGATACCATTTTGCTAATACGTCTACGGGCATCTCGTAGCCCCATTTGAAACGGAATTCAGCTGCCTCATTCCTTGCTTGGTAGACTAAGGACCTTGCATCAGCTGAAAAACAGAAAAAGGAAAACAAAGTTTATGATCAATGAAGAATGAAGGTATTCAGGAAAAACAAAATAAGAAAATATGGTCTCAATGCCAAATTATCACTAGCAGAACAAATTATGTGGAACCTAATGCTACAACATATATACTACTAGAAAGCAAGAGCCTTCATAAGGAAACTGATGGCAAATATGAAAGAGCTTAATTAATATGGTATGCTTGCATTTGATCCAAATTTTGTGGTGTTTTCGCAGTCCCCAAAAGAAAAAGGGCAGTGCTTTCTACCATTGCCCTAAGAGTTAAAACAAACAGAGCTAAACATACTGATATACCATCCAGTGCCTCATGTACAACCCAAAACAACCAGGAGAACCATGCCCTATATAAAGCTCTAGCATCATCGCAAAATTAACCGGCAAAATCACTGTGGGTGGTCTATTTCCACAGCATCTATCTCAAAATTGATATCTGGAATAACTTAATCTTAAACCTAAGACACACACAAAAAAAAAACAACTTTTTCTTCATCATCAACACGCACAAAAACATAACACTAGTTATATACAGTGAAGCAAAGCTGCAGAGCAAACAAACCTGTGAGGCCAGTGGCGAGCAGACCGATGTACTTGGTGATCGGGAACAAGTGCGTGACGCTCGTATGGTCCAGCAACTTGTCCTGCAAAATCAGAATCACATCACAAGGAGCAAGACAAATCAGTCTCCTCTCCTGGTCTCTAATCGCCGTATAAACAGCATAAAGCCGCGATCTTTTTAGATCGAAGCGAAGAGAACTCACCGGCACTTTCTTCTGTGTGACGACGCAGACGGAGTCCTTGCCGCGGACGCCGATCGACGTCACCCCCGCCGACTTCACCGCCTTGAACGCGTACTCTGCACAACACCAAAACACCAGATCAAACCAGATCAGATCAGCCTCCCAACATCACAAAAAAAGCAGATCTAACCTCGAGCGGGGAAAAACGAGGGCGGGCGAGGCTAGGGTTTTAGTAAGGGGGGAGACCACGCACCGACTTGGTAGAGGCGGCCCTCCGGGGAGAAGATGGTGATGTGGCGGTCGTAGCCGGCGCCCGTGCCGCGGCTCATCGTCGCCGGATTTCTCGCCGCCGCGGGTGGGGTTTCGCGTTCGCTTTGCTCCGAGAGAATACGGCGAGGCTTGTGTTTGTGCTTGGTTGGGGAGGCAAAATAAACCAAAAAT
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| CDS seq | ATGAGCCGCGGCACGGGCGCCGGCTACGACCGCCACATCACCATCTTCTCCCCGGAGGGCCGCCTCTACCAAGTCGAGTACGCGTTCAAGGCGGTGAAGTCGGCGGGGGTGACGTCGATCGGCGTCCGCGGCAAGGACTCCGTCTGCGTCGTCACACAGAAGAAAGTGCCGGACAAGTTGCTGGACCATACGAGCGTCACGCACTTGTTCCCGATCACCAAGTACATCGGTCTGCTCGCCACTGGCCTCACAGCTGATGCAAGGTCCTTAGTCTACCAAGCAAGGAATGAGGCAGCTGAATTCCGTTTCAAATGGGGCTACGAGATGCCCGTAGACGTATTAGCAAAATGGATAGCAGACAAAGCACAAGTCTACACGCAGCATGCCTACATGAGGCCCCTTGGAGTAGTTGCTATGGTCTTGGGCTATGACGAAGAGAAAAACGCTCAACTATTCAAATGTGACCCGGCAGGTCACTTCTTTGGACATAAGGCAACTAGCGCCGGTCTTAAGGAGCAGGAAGCAATAAATTTTCTGGAGAAGAAAATGAAGGATGACCCACAGTTCTCCTACGAGGAAACTGTCCAGATTGCAATTTCTGCATTGCAATCAGTTCTTCAGGAAGATTTCAAGGCCACCGAGATTGAGGTCGGTGTTGTGAGGAAAGATGATCGTGTTTTCAGAGCACTCACGACAGAGGAGATCGATCAGCACCTAACAGCCATAAGTGAGCGCGACTGA
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| Protein seq | MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQIAISALQSVLQEDFKATEIEVGVVRKDDRVFRALTTEEIDQHLTAISERD |
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| Function | Proteasome subunit alpha type-6 [UniProtKB/Swiss-Prot:Q9LSU3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0180400 | OsNip_03t0180400-01 | Chr03 | 4210533 | 4212985 | - | RAP2018-11-26 | ||
| CDS seq | ATGAGCCGCGGCACGGGCGCCGGCTACGACCGCCACATCACCATCTTCTCCCCGGAGGGCCGCCTCTACCAAGTCGAGTACGCGTTCAAGGCGGTGAAGTCGGCGGGGGTGACGTCGATCGGCGTCCGCGGCAAGGACTCCGTCTGCGTCGTCACACAGAAGAAAGTGCCGGACAAGTTGCTGGACCATACGAGCGTCACGCACTTGTTCCCGATCACCAAGTACATCGGTCTGCTCGCCACTGGCCTCACAGCTGATGCAAGGTCCTTAGTCTACCAAGCAAGGAATGAGGCAGCTGAATTCCGTTTCAAATGGGGCTACGAGATGCCCGTAGACGTATTAGCAAAATGGATAGCAGACAAAGCACAAGTCTACACGCAGCATGCCTACATGAGGCCCCTTGGAGTAGTTGCTATGGTCTTGGGCTATGACGAAGAGAAAAACGCTCAACTATTCAAATGTGACCCGGCAGGTCACTTCTTTGGACATAAGGCAACTAGCGCCGGTCTTAAGGAGCAGGAAGCAATAAATTTTCTGGAGAAGAAAATGAAGGATGACCCACAGTTCTCCTACGAGGAAACTGTCCAGATTGCAATTTCTGCATTGCAATCAGTTCTTCAGGAAGATTTCAAGGCCACCGAGATTGAGGTCGGTGTTGTGAGGAAAGATGATCGTGTTTTCAGAGCACTCACGACAGAGGAGATCGATCAGCACCTAACAGCCATAAGTGAGCGCGACTGA
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| Protein seq | MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQIAISALQSVLQEDFKATEIEVGVVRKDDRVFRALTTEEIDQHLTAISERD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 8.484968 | 10.181498 | 34.571354 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0614100 | SBH | 3.665554 | 3.232700 | 4.881260 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g08280 | RBH | 5.423442 | 6.444621 | 8.417461 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0180400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0005990 | RBH | 1.972385 | 121.141685 | 13.924150 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0005950 | RBH | 1.146060 | 43.871471 | 13.433745 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0005970 | RBH | 5.805931 | 164.818893 | 40.359783 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0005960 | RBH | 0.434043 | 4.128995 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0005920 | RBH | 23.816187 | 196.858871 | 74.780617 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0068600 | RBH | 43.203663 | 38.889109 | 41.1975935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0005820 | RBH | 0.285078 | 11.350636 | 4.238370 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0068900 | RBH | 40.259054 | 26.5700435 | 77.1658595 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0005880 | RBH | 1.412465 | 1.652851 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0005900 | RBH | 2.447085 | 118.654350 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0005880 | RBH | 10.674628 | 167.355804 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0005900 | RBH | 3.786566 | 8.569162 | 7.791890 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0005900 | RBH | 0.427063 | 42.392578 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G005920 | RBH | 1.690350 | 54.695770 | 17.880415 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0005740 | RBH | 2.274487 | 101.503860 | 46.022881 |
