Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0158300 | OGI:03008280 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:3120322-3123758 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAGCTGTAAGTGTACACTTGATTTATTGTTTAGTTCCATGTACCATGTTCTTTTTCCTGTTCTCTGTACACTTGGCCACGCTGATACATGAGATGCACCACTATCTCTTCCTGCATGCTATCGCTTTCAGCGTGTTTCTTGTTTCAAAGAACAATTCGTGTATAAATTGGTCGCCTTTTTCACTGTCGTAATAATGAAAAAAAAATAGAGAAGAAGTTACAGGTTGTCGTGCTCGATGACCTGCGCCGCCCTCCACTCCTCGCCGGGGTTGACGACCACCGGCACCAGCATGGACGCCGTCCCGGTGCACAGGAAGTAGTCCTTGCCGAACTTCCTGTACATCTCCCCCGGGCTGCACAGGTACATGTCCTCGTACCCCATCCTCACCACCCTGAACCCCAGCCCGCTATTCTGCAAACGCATCAACAAATTCAAAGATCAAATTCAGTTCAATTTCAACCAAGCCTTTGATGATCTTTTTTTCAATTCTCAGAAGAAACAAAGTTCTTGACGATCCATGAAGATTTCTTGGTGCTATGATTTTTCTTCAAAAAGGAAAAAGGCTTTGTCTTTTTATGATACTCTCCATTTCAAAAATTAACAACTAATGCCTCCTTCAAATGTTTGACGTTTGAACCAACCAACATCGAACAAAAAAAGAATAGAGGGAATATGTTATGTCAAATACGGATTGAGATCCTCTGACTTTACGTCAGAGGAACGTGGTGACTGGTATGTGGACCCCACCGCTCTCGGGCCTACCTACTAGTGACCACATCAGGGATAACTTTACGTCAGAAGATCCCTCAACATCAAATACAATACTAGTCTGTTATATTTTGGGAAAGAAGAATTATACGAACATATGAACATTTCTTGGTGGTGATTTTGGTTGTTTACCTGATCAATGGTGGTGAATTTGGAGGGCGCCGTGCTGTAGATGCGCTTCTTCCTCTCCTCCGGCGGGGCCGCGTACACCCTGCTCACCTTCTTCTTGAGGATGGTGTAGAGGTTGTCCTCCACGGTCCACACCCCCTGCCGGGGCTCCTCGCCGCCGCCGCCGCCGAACCATCCGCCGTCCTCCCGCTTCATGGCCTCCGCCGGGGTGAGGAGCGCGAAGCCGGCGGCCGGCGGCGGGTGGGAGCAGTAGGGGCATCCCCGGAGCCCCTCCACCGCCGTGCCCCGCCGCTTGTCGAACTTGATGTGGCTCAGCATCGCGCTCGTCAGCGACACCGGCTTCTTGCCGTTGTTCTTCACCATCACCGCCGTCGCCATGCTCAGCGGGTACAGCGTCACCACGTACGTCACCTCCAGCGTCCCGCTCCCCTTGGTGCACCCCAGCTCAACCTGCAAATCTTAGACAAATTTTACCCCAGATTTGAAGTGGATTTGTTTGCCTCGGAACGCAAACAAGATTCTTCAGGTTTGCAAACATTTGCAATGCCAACATGTAACATATTAAGGTACATAGATTTTTTTTTTTACCTACATGTAATCGCACCATGTTTGGCACAGCTTTGGATTAAGATTTCTTAGAGCTGGATATTTCTAGCTCCACAAATCCATTAACCAATATATGTTTATGTTGATATAATATTATTTTTTTTGACTGAAAAAGGTAGAGAGACTCTACCTTATAACCATTGTATTAATGGTAGTCAAGGTGATATATAAAGAGGTACAAAAGAACCGGATAAAGAGGGAGGAAGAAGAGAAAATAAGAAGGAGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATACAGAAAACAGGAGAAAGCATGGAAGAACTAGAAAAGCTAGCTACGCTAGTAAGTCTATCCATCTGCATATTGGAGGTCGACATTGTGGCTTAATGTGATTTTCCCATAATTGTAGACATTCTCTGATTTGATGTGTCACATTTGCCGTGGTAAGATCTCGCTGCTGGAATGTTCTATGGTTGCGTGCTTTCCATAAGTTGTGTGTGCAGGCGCCAAAGCATATTGGCCATCCAGATTTGAGATGTGAGGGCGTAATTGTCAGGACCTGATCAACGAAGTGGAGAACGTCTGTGCTTTGAGTTGCCTGTTCATAGATGTTGAGTTTCTTCCAAACCTTAGAAGCTAGTCGGCAGCGCAATATGATATGGTCTGCTGTCTCAATGGTAGGGCAGACAGCACAATGTGGATCAGATGCCCAGCATTTCTGTACCCTATTGTCATTTGTGTTCAGTCTTCCTCGAAAGGCCAGCCAAAGAAAAATTTTACATGTGTTCGGTATTGCTTTGATCCATATGAAAGGAGCTGGGCGCCATAGAATGCCATGATATGTTATAAGCCTGTAGTATGCTGCTGTTGTTAATCCAACCGGGCTTAGTGTACAGCTTCTTACGTCTTGTTCAGTATGCTGTAGTTGCTGAGAAGCTAGAATCGTCATGAGCGAATCCAGCTCAGTTTGGGCTTGGCGAGAGAGCACAGGGTGAAGATCCAGTACCCAATTATCATTAACCAGCTGAGAGGAGGCGGTGCAGTTGATGTCGCGGGCAAACGAGGCCAGGGTTGGAAAGGTGAAGCAATGATGAATTATATTGTTTATATTTTAGATAAAATATAAAATTTTAACTACTATAAAGTTTAACTTACAAACTTGAGTTATGTCAAACAGGACCTAAGCTAAATTGGTTTTGCATGTACATTCATTCTTGCGTGTTCTTGTTTTGAATTTTGTAAATTTCCCAAAATTCGTTCACAAAGAAATTCGCATTTGCAAACATTTGGGAATCGCGATGTGAACCAGCAACATAGGAAATTGAATATTCAAGACTCGAATGCAGTCGTTTCCTTCTCATTCCTCAAATATCAATCGAATATGATCTTGCACGTTCATGTTTTGAATTTTTTTTTATTGTAGAGTCCGTAAAATTCGTTCAAAAATCATTATGAAACGATTTTAGAATGGGAAGTGTACCTGCACTGCATCGTAGGAGTCGGAGTCGGCGTCCACGACGGACCACTCGGAGCCGACGAGGAGCGACTCGGCGGCGCCGGAGGAGGACACCTCGCTGAGCGCGAGCCCGACGCCGCCCTTGACCTCGCCGCCGGCGCCGGCGCCGGCGACGGTGTGGAGCACCTCCCTGCACCCGTCGTCCTTCCAGTACACCTTGGGCCGGTACGAGGTGACCAGCCCGTCGGCGAGCCGGAGCTGCAGCGAGCTGCCGTTCCGCACGCTGAGCTCGGCGGTGGGCGCGCCGGTGGCCGGGTCGGCGGCGAACCGGAGGCCCTTCCGTCCGAACGACTCCTCCAGCGACTGCGGCGTCGGGGCCGCCGCCGCCGTCGCGGCGGCGGAGGCCTTGACGGCGGACGGCCTCGTGGGGAGGTGGAGGGGGAGCAGCGAGGAGGTGGCCATGGGTGGGTTGGAGTGGAGTGGAGAGGCGGGGGCTTGGGCTTTCAC
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| CDS seq | ATGGCCACCTCCTCGCTGCTCCCCCTCCACCTCCCCACGAGGCCGTCCGCCGTCAAGGCCTCCGCCGCCGCGACGGCGGCGGCGGCCCCGACGCCGCAGTCGCTGGAGGAGTCGTTCGGACGGAAGGGCCTCCGGTTCGCCGCCGACCCGGCCACCGGCGCGCCCACCGCCGAGCTCAGCGTGCGGAACGGCAGCTCGCTGCAGCTCCGGCTCGCCGACGGGCTGGTCACCTCGTACCGGCCCAAGGTGTACTGGAAGGACGACGGGTGCAGGGAGGTGCTCCACACCGTCGCCGGCGCCGGCGCCGGCGGCGAGGTCAAGGGCGGCGTCGGGCTCGCGCTCAGCGAGGTGTCCTCCTCCGGCGCCGCCGAGTCGCTCCTCGTCGGCTCCGAGTGGTCCGTCGTGGACGCCGACTCCGACTCCTACGATGCAGTGCAGGTTGAGCTGGGGTGCACCAAGGGGAGCGGGACGCTGGAGGTGACGTACGTGGTGACGCTGTACCCGCTGAGCATGGCGACGGCGGTGATGGTGAAGAACAACGGCAAGAAGCCGGTGTCGCTGACGAGCGCGATGCTGAGCCACATCAAGTTCGACAAGCGGCGGGGCACGGCGGTGGAGGGGCTCCGGGGATGCCCCTACTGCTCCCACCCGCCGCCGGCCGCCGGCTTCGCGCTCCTCACCCCGGCGGAGGCCATGAAGCGGGAGGACGGCGGATGGTTCGGCGGCGGCGGCGGCGAGGAGCCCCGGCAGGGGGTGTGGACCGTGGAGGACAACCTCTACACCATCCTCAAGAAGAAGGTGAGCAGGGTGTACGCGGCCCCGCCGGAGGAGAGGAAGAAGCGCATCTACAGCACGGCGCCCTCCAAATTCACCACCATTGATCAGAATAGCGGGCTGGGGTTCAGGGTGGTGAGGATGGGGTACGAGGACATGTACCTGTGCAGCCCGGGGGAGATGTACAGGAAGTTCGGCAAGGACTACTTCCTGTGCACCGGGACGGCGTCCATGCTGGTGCCGGTGGTCGTCAACCCCGGCGAGGAGTGGAGGGCGGCGCAGGTCATCGAGCACGACAACCTGTAA
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| Protein seq | MATSSLLPLHLPTRPSAVKASAAATAAAAPTPQSLEESFGRKGLRFAADPATGAPTAELSVRNGSSLQLRLADGLVTSYRPKVYWKDDGCREVLHTVAGAGAGGEVKGGVGLALSEVSSSGAAESLLVGSEWSVVDADSDSYDAVQVELGCTKGSGTLEVTYVVTLYPLSMATAVMVKNNGKKPVSLTSAMLSHIKFDKRRGTAVEGLRGCPYCSHPPPAAGFALLTPAEAMKREDGGWFGGGGGEEPRQGVWTVEDNLYTILKKKVSRVYAAPPEERKKRIYSTAPSKFTTIDQNSGLGFRVVRMGYEDMYLCSPGEMYRKFGKDYFLCTGTASMLVPVVVNPGEEWRAAQVIEHDNL |
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| Function | Photosynthetic NDH subunit of subcomplex B 2, chloroplastic [UniProtKB/Swiss-Prot:Q94AQ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0158300 | OsNip_03t0158300-01 | Chr03 | 3120322 | 3123758 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCCACCTCCTCGCTGCTCCCCCTCCACCTCCCCACGAGGCCGTCCGCCGTCAAGGCCTCCGCCGCCGCGACGGCGGCGGCGGCCCCGACGCCGCAGTCGCTGGAGGAGTCGTTCGGACGGAAGGGCCTCCGGTTCGCCGCCGACCCGGCCACCGGCGCGCCCACCGCCGAGCTCAGCGTGCGGAACGGCAGCTCGCTGCAGCTCCGGCTCGCCGACGGGCTGGTCACCTCGTACCGGCCCAAGGTGTACTGGAAGGACGACGGGTGCAGGGAGGTGCTCCACACCGTCGCCGGCGCCGGCGCCGGCGGCGAGGTCAAGGGCGGCGTCGGGCTCGCGCTCAGCGAGGTGTCCTCCTCCGGCGCCGCCGAGTCGCTCCTCGTCGGCTCCGAGTGGTCCGTCGTGGACGCCGACTCCGACTCCTACGATGCAGTGCAGGTTGAGCTGGGGTGCACCAAGGGGAGCGGGACGCTGGAGGTGACGTACGTGGTGACGCTGTACCCGCTGAGCATGGCGACGGCGGTGATGGTGAAGAACAACGGCAAGAAGCCGGTGTCGCTGACGAGCGCGATGCTGAGCCACATCAAGTTCGACAAGCGGCGGGGCACGGCGGTGGAGGGGCTCCGGGGATGCCCCTACTGCTCCCACCCGCCGCCGGCCGCCGGCTTCGCGCTCCTCACCCCGGCGGAGGCCATGAAGCGGGAGGACGGCGGATGGTTCGGCGGCGGCGGCGGCGAGGAGCCCCGGCAGGGGGTGTGGACCGTGGAGGACAACCTCTACACCATCCTCAAGAAGAAGGTGAGCAGGGTGTACGCGGCCCCGCCGGAGGAGAGGAAGAAGCGCATCTACAGCACGGCGCCCTCCAAATTCACCACCATTGATCAGAATAGCGGGCTGGGGTTCAGGGTGGTGAGGATGGGGTACGAGGACATGTACCTGTGCAGCCCGGGGGAGATGTACAGGAAGTTCGGCAAGGACTACTTCCTGTGCACCGGGACGGCGTCCATGCTGGTGCCGGTGGTCGTCAACCCCGGCGAGGAGTGGAGGGCGGCGCAGGTCATCGAGCACGACAACCTGTAA
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| Protein seq | MATSSLLPLHLPTRPSAVKASAAATAAAAPTPQSLEESFGRKGLRFAADPATGAPTAELSVRNGSSLQLRLADGLVTSYRPKVYWKDDGCREVLHTVAGAGAGGEVKGGVGLALSEVSSSGAAESLLVGSEWSVVDADSDSYDAVQVELGCTKGSGTLEVTYVVTLYPLSMATAVMVKNNGKKPVSLTSAMLSHIKFDKRRGTAVEGLRGCPYCSHPPPAAGFALLTPAEAMKREDGGWFGGGGGEEPRQGVWTVEDNLYTILKKKVSRVYAAPPEERKKRIYSTAPSKFTTIDQNSGLGFRVVRMGYEDMYLCSPGEMYRKFGKDYFLCTGTASMLVPVVVNPGEEWRAAQVIEHDNL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 9.687812 | 8.872342 | 3.111906 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g06230 | RBH | 4.088944 | 3.778858 | 0.335108 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0158300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0004370 | RBH | 0.947327 | 0.000000 | 0.980980 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0004300 | RBH | 0.997053 | 0.000000 | 0.694456 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0004330 | SBH | 3.682722 | 0.000000 | 1.640106 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0004300 | RBH | 0.686183 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0004350 | RBH | 20.907768 | 0.000000 | 4.674756 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0049900 | RBH | 37.0157035 | 1.981139 | 0.0162785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0004240 | RBH | 1.134343 | 0.087458 | 0.078945 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0050400 | RBH | 25.8406625 | 0.3072215 | 1.409683 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0004350 | RBH | 0.830037 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0004320 | RBH | 3.253772 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0004280 | RBH | 22.195383 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0004340 | RBH | 3.221741 | 0.000000 | 0.878785 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0004330 | RBH | 1.701656 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G004300 | RBH | 0.719844 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0004150 | RBH | 8.695547 | 0.000000 | 3.974548 |
