Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0129800 | OGI:03004570 | 11/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:1668201-1673176 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACCTGCAATTCCTAGGCACACTCCAGGTGACAGAATGCCGGTCACTCCCGGGCGTCGCCATGAACCTCCTCCAGTCCTGGAGCATGAGCCCGAGGTCGTCGACCTTCCGGCGGAGGCCGACGCAGCAGTTGGCGTGCATGGTGCACACCGTGCTCAGATTCCGGCCGTGCTCGCAGAGGCCGGCGAAGAGGTCGGTGCTGAGGAACCTGATCCTGACGCCGAGGCGGGCGACGTAGGCGTCGCGCTTGATGAGGTTGAGCACGTCCTGGTCGTGGAGACCCGGGTGCCTCTCCCTCGCCGCGTACCAGTACCGGTAGAACGCCGCCGTCGCCGAGGTCGAGCGCACGTACGCGAACCCGCCGTTGGGGCTGTTGCTGAGGTCGTCCGGGTCGCCGGTGAAGTGGTCGCAGGCGATCTGGAAGTCGCCGTCGTGGTGCAGGTGCGGCAGCGGGTTCCTGAACCACACGATGTCCGTGTCCTGACGAAACAAACCTTCACAAAGTTCAGACTTTGAACAAAAAGAATAGTATGTTCTTTGAGCAAAAGATTTGATTAGAAAAGCCATTGTTTCGCTTACAATTGCTTACTATGGATCATAAGGAACACAACTTATAAGTGATAAAAAATATAATATATAGATAAAACTTTTATATCTATGTTCATAACCATATAAAAATAAACTACATGAAAACCTTAAAATCAATTTTAAAATTAAGTTTTATTGTTTTTCTTCTCTTTTTACCGTGAAGATGAAGCTGTAGCCCTTGGCAAGAACGTGGCCGAGGAAATCGATGCGTCGCCACATCATCTTGAGGTAGCCGTCGGTCATGAAGTTCTTCTCGCCGGAGAAGTCGAAGCCATCGTCGGTGGTGAGGGCGAAGCAGTGGCGGTGGATCTGCAGGCAGCGGCGGTGCGCCGTGAGGTCGAGGGAGACCATGACGAGGTGGTCGAGGAGCCACCTCGTTTCGTCGCCGATCCGGAAGCTCTCGAGGAAGACGTCCACCACCGACCCGGGCTCCGCCCACGCCGAGTTCAGCGTCGTCAGGATCACCGTGCCGTTCGCCATCGCCGCCGCCCTCAGGACGCGTTCCAGCCTCGCGTCCTCACTGTTCTGCGTGCACAAGCACAACCTCATATATGTCACATTGATTAACTGTTACCTGCCGGAAATATGGTGTATAAAAAGAGGACATATTTGGTGAAAACAAGCTAAATGTGAAAACTCATGAAAATCATATCTAAAAATTTTGTAAATTTATGAAAAAACTACTAGAGATATGCGTAGATATGAAATACACTCTCACAAATCTTAAATCTAAACTCAACTTAGGGTGTGTTTGAGGAGAAGGGGATTGAGGAGATTGGGAAGATACGCAAAACGAGATGAGCTATTAGCTTATGATTAATTGAGTATTAACTATTTTAAATTTCAAAAATGGATTAATATGATTTTTTAAAGCAATTTTCCTATAGAAAATTTTTACAAAAAACGCAAAAAAGAGAACATGTTGATTATAGAAAAATTAGGCCTGGATGCAGAGTGGGCCTAGCTCGCCGCGGACCGCGCGCGGGTCGAAGAGGAGCGACGCGCCGTGGATGACATGGTGAGGGTGGAGCGCAAAATGCGCCAAGCCCAACTAGCCGAAATCCAGGCGCGCGAGGAGGTCCTGGACTCCCTCATGCGGGATACGGAGGAGGAGCGGCAGGCGGCACTGATCGCCTCGAGCGTCCTGGACGAGGCGCTGGGCGACATCTGCCTCCAATATGAGGCTCATGCCGAGGACCTGGAGAGGAGGATCCAGGACGCGCGCGGCATCCTCGACGCAGCTGCCGCCCAAGAGCGGCGGGCGTCAGAGGCTAACGCCTCTCTGCAGGCTCGGATGACGGCGCTCGAGGCTGAGCGCAAAGCCTTGGTGCCCTTGCCCTCACCCATAACTGTTTAGTAGTTTGGGAAACGTGCGCGCAGAAAACGAAACAAACAAACTCACTCTCTCACCCTCTCGAACGCTGCCTTAGTTTAAGAGAAATATAAATAAAAAAATTTCAGATGAATAGTGTGCTGTTACTATTGTGGCAGGTTTTTTTAAGAAAAAAAAATAGATGTTCAAATGTAACTACCATTCCTGTGTTTTTTACGACTAGTTTGAAATGAATGAAGTTTGCCGGATTTTCACATGAATCAGTCCAATTCCCGTGAAATTCTCTTTAAAAAATCCTCTATTTCAAAAGATGCCTTTGCCAATAGAAGAGATGTACTAGTCTGTTAATTTGATTGGCAGACAGTTTTTCATGTTGCTTTCTAAGAATGCCAACCATGCCAGTAATCTGGCATTTTGGCATGGATGTCGACTGTCAAAAAAAAGTTTTTAAGTGCCGTGGCCAATCAAACGCTGTAGGCCTGCTACAGGACGAGTAAAATTTCATTTCTGGGAGTGAATTCTCGGGTGCATGCATCACAGGGTTGAATTACATACTAACCTGGGAGCAAATTTCTGGCACGTTGCAATTGAATAATAGTGTTTCTAGAAAGAAGCCAAATGAGGAGGTTAACAGCACTCACATTGTCAACATAATTTACAGTTTAGACTAAAGCCTTACCATTTGAAAACAATTTGCGCGTTCGCGGAAATAAAAGCGTTCGCGAAAAAAAACAATTTGCAATTTGCGAAGGCACTGATCTTATCTCAAATTGGTGGATCTCCCGAATTCACCATCGCTCTCATCAGTTTTACTATTCTTCCTCTACAGTGGAGTATTTAACTATTTACTACTGCTAACAATGAGGAATTTTAACCGTCCACCATTTTTGCACCCAAAAAAAAAATCAATGAGATGCAAAGAGGTGTTCCTGCATTTTCTGGTGATCATGAACATGAATCACAAGCTGATTAAAGAAAAATAATTTTTGCCAACAAAAACAGCCTTCAGTTCAGCCGTACGTGACTGACAGACGTGTTCATCGTTTACGTATACACACCTTGATCATCCTAGAGGAAGAAGGCGGGCGAACAACTCACCACCGGGTCGACGTCGCCGCGCGGCGGCGCCGGCAGGGCGGCCGGCCGGAGGAACAGCCCCGCCGGCGACACGGCGGCGCGGTACAGCACGAGGCACGGGAGCGCGACGGCCGCCAGGAACAGCGCCGCCGTCTTCGCCCTCCTCACCTGATCGCCCGCTCCAACTCCGGCGCCACCACCGCCGCCGCCGCCGCCGACCTCATCCGCCGTGGCCATGCGAGATCAGACGTATGCGCGCGTTACACCGGCCACCGGAAAAGGGTTTTAACGTGTTCGCGGGGGGAATGGCTCGCGGCGGCTCCAGCGTGCGCGACCCAATGGCCGTTTCGCGCGTATTTGTAGGCATGGATGGCTTGGATTTCCCGGAAAAAAAATCGCGCCCGATCGATCGAGTCTGTCACGGTGGAATTCCTTCCACTGGTTCGGTCGGTCATCCGGAACAGCGTGGCGCGGTGATCAAATTGCTCCAACCAAAACATGGACCGGGGCTTCCGAAACCGTCAAACGGAACCAAATCCCCCCCAAATTTCCGTCGCATTTACTTCCACTTGTTTTTTGCTTTTTCCTATCTGGGAGCTAGATTACTTTCAGGGTAAGAATGAAATTAGGAGCTCCGCCACTAGCCGCCCGCCGTGTGAAGTTCTAAGTTTTGAACCTTCGTTTTCCCTTGTTGAGCCAATGTTGTACGACTAAACTGTGGGCTTTTAGTGCCTCTGACGAAGAGCAAATATTGCTCAACATGTTCGGGAAGCAAGCTAGTCGATCTGAATTCAGATTACTTTATCTGGTGGTGACACCGATTGTTGCAATTCTGTCTAAAGTTCAGATCAACTACATGTATTCCTGAACTGGCTTGTAGTTGTAGACGCCGTAAAAGTACCAACTGCATGACTTTTTCTCAGATATACTCCTACTACAAAAAGGTAACTTGGGTTAGGCTTTATACTGCATTTGTTGCCCATGTGCACCAATGAGCTTAGTTTGATTTTGTCTGCACTTTACTGTTCAATCCGCGTGAAGCACTGTGACATATGTCCGTGTAGAAGCTGACAATTCATGCATGCTACTACTCCATTTCAACAGAAGAGAAACGTACAACCTTGAACCTGGTACAAATTTCCCCTGTATTTACAGTACACATGAAGAGAATGGAGAAGAACATGCCCACTAAATTTGGGCTCATAAAAGCTAGCCACAGACCTACGGTACTGAAGCTTGAATTTGCCACTTCAAAAAGGCTAAGCTGTTGCTTGGTGCCTTGGTTGCTTCCATTGAAGAAAGTTAAGGTGTGTTATTTCTGCCTGATCTCTTTTTTTTTTTTTGCGGGGAAATTTCTGCCTGATCTCTGTACGTATAACCGCATGAGGTGCAGAAATTCGGGGCATCGAGATTCGTGCTTTCTCCAGGATTGGTGAATAGCTAATCTGAATAAGAGGCCCATATGTGAAAGCAGCTCGCGGCCCAAGAGAAAAACTATATGAGCTGCCTGAATAAGAGGCCCATATATGAGCTGCCTTGTTGGGCCTAAAACTACATCAAAATCAGGCGACAAAACGGCCCACAAAGCCCACAAAGGCCCAAACATCTCACGCTGCCACGCACGCACGCACGCTCTACGAGTCAAGCGTGGAGAGCGACAAGTCGAGGCTGATCCGGCTTCCCGACGACGACGACGTCGTCGACGAGACCAGGCTGCCGCCGGCGCCGGCGCATCCCGTGTCCAACGCCAGCGAGAGCGAGAGCGAGCAGCCGTCGTCGTGCTCGCCGTCCGGCGCCACGCCGTTGTTGCTCGCGGCGGCGGCGGCGGCCGGTTCGAACCACACCGAGCGATACGACGACGAGGGGCGCGCCTCCGCGCGGCCGCCGCCGCCGCCGCCGCCGCAGCTCGCCGTTGGCGGCGCGACGCGGTGTGGGGCAAACGTGCCGACCTGCATGAACAGCGCCACGTGGTAATTAA
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| CDS seq | TTAATTACCACGTGGCGCTGTTCATGCAGGTCGGCACGTTTGCCCCACACCGCGTCGCGCCGCCAACGGCGAGCTGCGGCGGCGGCGGCGGCGGCGGCCGCGCGGAGGCGCGCCCCTCGTCGTCGTATCGCTCGGTGTGGTTCGAACCGGCCGCCGCCGCCGCCGCGAGCAACAACGGCGTGGCGCCGGACGGCGAGCACGACGACGGCTGCTCGCTCTCGCTCTCGCTGGCGTTGGACACGGGATGCGCCGGCGCCGGCGGCAGCCTGGTCTCTTGGAGCGGGCGATCAGGTGAGGAGGGCGAAGACGGCGGCGCTGTTCCTGGCGGCCGTCGCGCTCCCGTGCCTCGTGCTGTACCGCGCCGCCGTGTCGCCGGCGGGGCTGTTCCTCCGGCCGGCCGCCCTGCCGGCGCCGCCGCGCGGCGACGTCGACCCGAACAGTGAGGACGCGAGGCTGGAACGCGTCCTGAGGGCGGCGGCGATGGCGAACGGCACGGTGATCCTGACGACGCTGAACTCGGCGTGGGCGGAGCCCGGGTCGGTGGTGGACGTCTTCCTCGAGAGCTTCCGGATCGGCGACGAAACGAGGTGGCTCCTCGACCACCTCGTCATGGTCTCCCTCGACCTCACGGCGCACCGCCGCTGCCTGCAGATCCACCGCCACTGCTTCGCCCTCACCACCGACGATGGCTTCGACTTCTCCGGCGAGAAGAACTTCATGACCGACGGCTACCTCAAGATGATGTGGCGACGCATCGATTTCCTCGGCCACGTTCTTGCCAAGGGCTACAGCTTCATCTTCACGGACACGGACATCGTGTGGTTCAGGAACCCGCTGCCGCACCTGCACCACGACGGCGACTTCCAGATCGCCTGCGACCACTTCACCGGCGACCCGGACGACCTCAGCAACAGCCCCAACGGCGGGTTCGCGTACGTGCGCTCGACCTCGGCGACGGCGGCGTTCTACCGGTACTGGTACGCGGCGAGGGAGAGGCACCCGGGTCTCCACGACCAGGACGTGCTCAACCTCATCAAGCGCGACGCCTACGTCGCCCGCCTCGGCGTCAGGATCAGGTTCCTCAGCACCGACCTCTTCGCCGGCCTCTGCGAGCACGGCCGGAATCTGAGCACGGTGTGCACCATGCACGCCAACTGCTGCGTCGGCCTCCGCCGGAAGGTCGACGACCTCGGGCTCATGCTCCAGGACTGGAGGAGGTTCATGGCGACGCCCGGGAGTGACCGGCATTCTGTCACCTGGAGTGTGCCTAGGAATTGCAGGTGA
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| Protein seq | LITTWRCSCRSARLPHTASRRQRRAAAAAAAAAARRRAPRRRIARCGSNRPPPPPRATTAWRRTASTTTAARSRSRWRWTRDAPAPAAAWSLGAGDQVRRAKTAALFLAAVALPCLVLYRAAVSPAGLFLRPAALPAPPRGDVDPNSEDARLERVLRAAAMANGTVILTTLNSAWAEPGSVVDVFLESFRIGDETRWLLDHLVMVSLDLTAHRRCLQIHRHCFALTTDDGFDFSGEKNFMTDGYLKMMWRRIDFLGHVLAKGYSFIFTDTDIVWFRNPLPHLHHDGDFQIACDHFTGDPDDLSNSPNGGFAYVRSTSATAAFYRYWYAARERHPGLHDQDVLNLIKRDAYVARLGVRIRFLSTDLFAGLCEHGRNLSTVCTMHANCCVGLRRKVDDLGLMLQDWRRFMATPGSDRHSVTWSVPRNCR |
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| Function | Uncharacterized protein At4g15970 [UniProtKB/Swiss-Prot:P0C042] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0129800 | OsNip_03t0129800-00 | Chr03 | 1668201 | 1673176 | - | RAP2018-11-26 | ||
| CDS seq | TTAATTACCACGTGGCGCTGTTCATGCAGGTCGGCACGTTTGCCCCACACCGCGTCGCGCCGCCAACGGCGAGCTGCGGCGGCGGCGGCGGCGGCGGCCGCGCGGAGGCGCGCCCCTCGTCGTCGTATCGCTCGGTGTGGTTCGAACCGGCCGCCGCCGCCGCCGCGAGCAACAACGGCGTGGCGCCGGACGGCGAGCACGACGACGGCTGCTCGCTCTCGCTCTCGCTGGCGTTGGACACGGGATGCGCCGGCGCCGGCGGCAGCCTGGTCTCTTGGAGCGGGCGATCAGGTGAGGAGGGCGAAGACGGCGGCGCTGTTCCTGGCGGCCGTCGCGCTCCCGTGCCTCGTGCTGTACCGCGCCGCCGTGTCGCCGGCGGGGCTGTTCCTCCGGCCGGCCGCCCTGCCGGCGCCGCCGCGCGGCGACGTCGACCCGAACAGTGAGGACGCGAGGCTGGAACGCGTCCTGAGGGCGGCGGCGATGGCGAACGGCACGGTGATCCTGACGACGCTGAACTCGGCGTGGGCGGAGCCCGGGTCGGTGGTGGACGTCTTCCTCGAGAGCTTCCGGATCGGCGACGAAACGAGGTGGCTCCTCGACCACCTCGTCATGGTCTCCCTCGACCTCACGGCGCACCGCCGCTGCCTGCAGATCCACCGCCACTGCTTCGCCCTCACCACCGACGATGGCTTCGACTTCTCCGGCGAGAAGAACTTCATGACCGACGGCTACCTCAAGATGATGTGGCGACGCATCGATTTCCTCGGCCACGTTCTTGCCAAGGGCTACAGCTTCATCTTCACGGACACGGACATCGTGTGGTTCAGGAACCCGCTGCCGCACCTGCACCACGACGGCGACTTCCAGATCGCCTGCGACCACTTCACCGGCGACCCGGACGACCTCAGCAACAGCCCCAACGGCGGGTTCGCGTACGTGCGCTCGACCTCGGCGACGGCGGCGTTCTACCGGTACTGGTACGCGGCGAGGGAGAGGCACCCGGGTCTCCACGACCAGGACGTGCTCAACCTCATCAAGCGCGACGCCTACGTCGCCCGCCTCGGCGTCAGGATCAGGTTCCTCAGCACCGACCTCTTCGCCGGCCTCTGCGAGCACGGCCGGAATCTGAGCACGGTGTGCACCATGCACGCCAACTGCTGCGTCGGCCTCCGCCGGAAGGTCGACGACCTCGGGCTCATGCTCCAGGACTGGAGGAGGTTCATGGCGACGCCCGGGAGTGACCGGCATTCTGTCACCTGGAGTGTGCCTAGGAATTGCAGGTGA
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| Protein seq | LITTWRCSCRSARLPHTASRRQRRAAAAAAAAAARRRAPRRRIARCGSNRPPPPPRATTAWRRTASTTTAARSRSRWRWTRDAPAPAAAWSLGAGDQVRRAKTAALFLAAVALPCLVLYRAAVSPAGLFLRPAALPAPPRGDVDPNSEDARLERVLRAAAMANGTVILTTLNSAWAEPGSVVDVFLESFRIGDETRWLLDHLVMVSLDLTAHRRCLQIHRHCFALTTDDGFDFSGEKNFMTDGYLKMMWRRIDFLGHVLAKGYSFIFTDTDIVWFRNPLPHLHHDGDFQIACDHFTGDPDDLSNSPNGGFAYVRSTSATAAFYRYWYAARERHPGLHDQDVLNLIKRDAYVARLGVRIRFLSTDLFAGLCEHGRNLSTVCTMHANCCVGLRRKVDDLGLMLQDWRRFMATPGSDRHSVTWSVPRNCR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.474099 | 0.355077 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g03730 | RBH | 0.495622 | 0.382143 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0129800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0002350 | RBH | 0.094906 | 0.000000 | 0.283762 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0002320 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0002350 | RBH | 0.783305 | 0.0 | 1.010556 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0002330 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0002370 | RBH | 0.000000 | 1.454222 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0026300 | RBH | 0.8929395 | 5.283651 | 0.1089865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0002310 | RBH | 0.034185 | 0.0 | 0.109991 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0027200 | RBH | 3.129071 | 14.0529945 | 2.9412445 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0002400 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0002400 | RBH | 0.0 | 0.959110 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0002370 | RBH | 2.132202 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0002410 | RBH | 0.131473 | 0.170277 | 0.596675 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0002390 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G002390 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0002220 | RBH | 0.000000 | 0.0 | 0.000000 |
