Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0128700 | OGI:03004440 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:1625098-1629527 | ||||||||
| Gene Symbol | CDPK7, OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13, OsCDPK12, OsCPK11, OsCDPK1 | ||||||||||
| DNA seq | TCTTCTCTCCGCTCTATTTTTTTCATCCTATCGATTTTGCAGTTTAGCCCTCGAAGAAGCAAGGATTTCGAGCCCGGTCCCTAGGCTCGATCCGGCCGTGTCCTTTGCTCCGATCGAGCGCGCGAGGTCTCGTAAGGTCCATCCTGAGCTTGTTGCTGTGGAGTGCGCGATTCCGCGCTCGATTTCGTTTCTTCCGGCGCAGATTTCGTGTTTTTTGGCCTAGATTTGGCTTGTGGGTGACCGCCTAGGCGTTTCTCGCGTGTTTCGGCTTTTTGTCTGGGATCGATTTGTGGCTGGATTTGCTTGTTCCTGGCTGCGGAGCTTGGATCTTAGCATTAGAAACCCTCAGATTGGGGATTTCCTGCCGGAGGAAGCTTTTTGGAGGAGCTGCCTTTGGGAGGAACTCTTCCAGTTCTGAGGGTTTCGGTGTTTGTTGCTCGCCTGGCTCGAGAAGAAGCTGGGAAATCTCGTATTTTAGGGCGGGTTCTAGTAGATTTCGTGTAGTGGAGAGCAAAAAGTTTGTGTGGTTTTGGTGGTCAAGTCTGGTGGTGGAAGCCCCTCAGGCCGGAGATTTCCTCCTTCCGGTGGACGACCAAAGGAGCCGCCCTTGGAAGGAATTTCTTGCCATCCCAGAGGTTTCCACTTCCTCACCTTGGCTAAGTTTAAAACTTTCCGCTGTTTTCCCTTGCCGTGTAGTAACAAGTATGGGTTGCTGATCAAGTCTTTGTTGTGAAAAATGTCAGGTTGGGGATTTCCTCACGCCCAGGAAGCCAAGCAAGGGCTGCCTTAGCGAGGAACTCTTCCAATTGGACGGGTTTGCGCGTAGCGGTGCGGCTATATAAGTGGAAATCTGCATCCCTGGGAAGGATACAATTGTTTTGAGGCTGGGAACTTTGGAATTGGTTTGCATAAGGAGTTCTTGGAATGGGGAATCAGTGCCAGAACGGGACTCTTGGGAGTGATTACCACAATCGGTTCCCAAGGGAGCATGCCGTTGGGTACGTTCAGGGGGATAGCTACTTGGACTTGAAGAAGTTCGATGATACTTGGCCTGAGGTGAACAACTTCAAGCCTACTGCTGCTAGTATTCTCAGGCGGGGGTTGGATCCTACATCTATCAATGTCCTTGGGCGGAAGACAGCGGACCTAAGGGAGCATTATATCATTGGTCGGAAGCTTGGTCAGGGCCAGTTTGGCACAACTTACCTCTGTACCGAGATCAATACAGGGTGTGAGTATGCTTGCAAGACCATCCCAAAGCGCAAGCTCATCACCAAGGAGGATGTAGAAGATGTGCGCCGTGAGATTCAGATAATGCACCATTTGTCGGGCCACAAGAATGTTGTTGCAATCAAGGATGTCTATGAGGATGGGCAAGCGGTGCACATTGTGATGGAGCTCTGCGCTGGTGGGGAGCTCTTTGACAGGATTCAGGAGAAGGGGCATTACAGCGAGCGGAAGGCTGCAGAGCTTATAAGAATAATTGTCAGCATTGTGGCTATGTGCCATTCGCTCGGGGTGATGCACCGTGATCTTAAGCCAGAAAATTTCCTCCTTTTGGATAAAGATGATGATCTGTCAATAAAGGCAATAGATTTTGGTCTATCCGTGTTCTTCAAACCAGGTATATGTCGCATTTTAATGCACTTGTAGTGGTTTATTTTTATTTTTAGAGAGTAACATATCAACACATAACGTGTATATGTCTGCTTTGCTGTATATTCTGTGGATATTATTTGCATGCCACCAGAATCAAGACCATCCTAACTATATTCTGTTGTTTATCCATCTTATTCATCTTCCTTAATAGTTCTTGCAATTTACATGTGTGAAGTGTTGTGGATTTACAAAATAGTTTTTGACTTCTATCTTTACTTAAATTTGGTGTTTTAAAATTTGCAGGTCAGGTTTTCACTGAGCTGGTTGGGAGTCCATATTATGTTGCTCCTGAGGTATTGCACAAACGTTATGGACCAGAATCTGATGTGTGGTCAGCTGGAGTGATACTTTACGTTTTGCTGAGTGGAGTGCCACCATTTTGGGCAGGTGGGTTATCTAAATTCTCAGGTGTTAAATTTGAATCTAATATCATTCTGGAATTGCAAAGCTGATCACATCCTATCCTTTTCCAGAGACACAACAAGGAATATTTGATGCAGTTCTGAAGGGTCACATTGATTTTCAATCTGATCCATGGCCAAAGATATCTGACAGTGCAAAGGATCTTATAAGAAAAATGCTCTCTCATTGCCCTTCGGAGCGTTTGAAGGCCCATGAAGTGCTAAGTAAGTATATTTGACCTATTTCTTCACATAAATTAGTTGCCCTTTTGTTTCATCGCGAATAGCTCTGCATTTTGTTCATAACATAGTTTGACGCATGGTTTTAGTTTTCACTAATTATCTAAGAGCTACAAACCTTTTGATATGTTGACTGATATATATATCTTATTGTCAGGGCATCCTTGGATCTGTGAAAATGGAGTTGCCACTGATCAAGCTCTGGATCCCAGTGTTATCTCTCGGCTCAAACAATTCTCTGCAATGAACAAGTTAAAGAAGTTGGCTCTGAGAGTGAGTGCTTCATATTCTTGCATGCTTCCATATTGCTGCTATGATATTTGCTATCATATCATCTTAATCGAGTATCCCCAATTGGCCTTCAGCCCTTCACTATATCCATTCGCATGCCATGCCATATTGTCATTCTTTGGATCCCTATGATAGTAAAATAAGTTATTTTTTTGGTAAATGTCAACTTTGGGAGCTGCTCTAGGCTGATCATCTGATTTTGTGGCAATATGGAAAACAAGTTTTTAGGTTGCGATATTCAATTATGTGGTATGCACATTAACATGCCGCAATTCAGCCTGTAGCACTATTTCGTTGCATGTCCTACTGCTGGCTACATCTGTGAACCATATGCCATTTCTTTTTTCTGACACTTACGTGCTTCCAGGTGATAGCTGAGCGTCTTTCAGAGGAGGAGATTGCTGGGTTAAGAGAAATGTTCAAGGCAGTGGACACAAAAAATAGAGGTGTAATCACTTTCGGTGAGCTTAGAGAAGGTTTAAGAAGATTTGGCGCTGAATTTAAGGATACAGAGATTGGTGATATAATGGAAGCGGTAAGTAGGTGCAAGACCACAAATTGTTGGTTAGATGGTGCTCTCTTTCTTTGAGATCTTGATTTAAACTCTGAAACTTCTTCAGGCACACAACGACAATAATGTAACAATCCATTATGAAGAATTTATTGCTGCAACTCTACCTCTTAACAAGATAGAACGTGAGGAGCACCTGCTGGCAGCTTTTACATATTTTGACAAAGATGGGAGTGGTTATATCACAGTTGACAAGCTTCAACGAGCTTGTGGAGAACATAACATGGAGGATTCACTCCTTGAAGAGATTATTTCAGAGGTTGATCAAAACAATGTAAGTTGATTTCACTATACAATATCCAAGATTTATTTTTTAGTGACTATTGACTTGTAACCACCGTATTGAGAATAATTTCAGCATAACACTCTGCGCTTTAAACGAAAGCATACACTCTTGGACATGTTAGGATTTTTTTAGACTTCTAGTGTCTCTGCTGGTCAGCTGGTACATCGGTAGTTTGCGTTGTAGTCTTTAATCCTAATGACATTCCCTGTAAAATTATTTATTTGATTTTACTGGCATCTGTCAGCGTCACATCTAACACCAAACTTGTTCAACAACAGAACGATAACATGTACACGGTTGAGGGCAGTCTCTTCTACAGATCCATTTGTCCTGGGTCCTCATGCTTTAGAACTTAGCATTAGCATGTTTTTTTTTCCAGGGATAGTATTTCAAAAGAAAAAAGAAGGCGATGATTTTGATTCGTCAACCCTGAAAATCTTTCTCGAGTTGAATCTAATGAACTGGTCTTGTCATTCTTTTTCAGGACGGCCAAATTGACTACGCCGAATTTGTAGCCATGATGCAAGGCAGCAACGTTGGACTAGGGTGGCAAACAATGGAAAGCAGTTTGAATGTAGCATTAAGAGACGCACCTCAAGTACATTGATGCACGAATGTATAGATTTTGTTCTCTTCTCTTGTCCATTCATTCTTCACTACCCAATTCGGGTCTGTGACTTGTATGAGAAGAGATCAAGTCAATTCATTTAGTTGGTATTTATTCCAAGCAAGTGTGAGTTGATAAGTAGCGTAGTCTCTATGGAGACAATAGCATGAGCATATAGTGGTGGTATATTGGTTGATGTAGTTGCAAGGCCGCCTAGCAATTAAAAAAGAACCCAAAAGAGGTGCATTCGCTTTGTTGGTTGTTCTTTCAACGACCTGTATTACGCAATGAAAGTCGTCATGTTTGCGTAACTCTAATCTCAATGCTTGCGTTCCTATAATATCTTTAAAGATTATAATATTACATTTCCATGTC
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| CDS seq | ATGGGGAATCAGTGCCAGAACGGGACTCTTGGGAGTGATTACCACAATCGGTTCCCAAGGGAGCATGCCGTTGGGTACGTTCAGGGGGATAGCTACTTGGACTTGAAGAAGTTCGATGATACTTGGCCTGAGGTGAACAACTTCAAGCCTACTGCTGCTAGTATTCTCAGGCGGGGGTTGGATCCTACATCTATCAATGTCCTTGGGCGGAAGACAGCGGACCTAAGGGAGCATTATATCATTGGTCGGAAGCTTGGTCAGGGCCAGTTTGGCACAACTTACCTCTGTACCGAGATCAATACAGGGTGTGAGTATGCTTGCAAGACCATCCCAAAGCGCAAGCTCATCACCAAGGAGGATGTAGAAGATGTGCGCCGTGAGATTCAGATAATGCACCATTTGTCGGGCCACAAGAATGTTGTTGCAATCAAGGATGTCTATGAGGATGGGCAAGCGGTGCACATTGTGATGGAGCTCTGCGCTGGTGGGGAGCTCTTTGACAGGATTCAGGAGAAGGGGCATTACAGCGAGCGGAAGGCTGCAGAGCTTATAAGAATAATTGTCAGCATTGTGGCTATGTGCCATTCGCTCGGGGTGATGCACCGTGATCTTAAGCCAGAAAATTTCCTCCTTTTGGATAAAGATGATGATCTGTCAATAAAGGCAATAGATTTTGGTCTATCCGTGTTCTTCAAACCAGGTCAGGTTTTCACTGAGCTGGTTGGGAGTCCATATTATGTTGCTCCTGAGGTATTGCACAAACGTTATGGACCAGAATCTGATGTGTGGTCAGCTGGAGTGATACTTTACGTTTTGCTGAGTGGAGTGCCACCATTTTGGGCAGAGACACAACAAGGAATATTTGATGCAGTTCTGAAGGGTCACATTGATTTTCAATCTGATCCATGGCCAAAGATATCTGACAGTGCAAAGGATCTTATAAGAAAAATGCTCTCTCATTGCCCTTCGGAGCGTTTGAAGGCCCATGAAGTGCTAAGGCATCCTTGGATCTGTGAAAATGGAGTTGCCACTGATCAAGCTCTGGATCCCAGTGTTATCTCTCGGCTCAAACAATTCTCTGCAATGAACAAGTTAAAGAAGTTGGCTCTGAGAGTGATAGCTGAGCGTCTTTCAGAGGAGGAGATTGCTGGGTTAAGAGAAATGTTCAAGGCAGTGGACACAAAAAATAGAGGTGTAATCACTTTCGGTGAGCTTAGAGAAGGTTTAAGAAGATTTGGCGCTGAATTTAAGGATACAGAGATTGGTGATATAATGGAAGCGGCACACAACGACAATAATGTAACAATCCATTATGAAGAATTTATTGCTGCAACTCTACCTCTTAACAAGATAGAACGTGAGGAGCACCTGCTGGCAGCTTTTACATATTTTGACAAAGATGGGAGTGGTTATATCACAGTTGACAAGCTTCAACGAGCTTGTGGAGAACATAACATGGAGGATTCACTCCTTGAAGAGATTATTTCAGAGGTTGATCAAAACAATGACGGCCAAATTGACTACGCCGAATTTGTAGCCATGATGCAAGGCAGCAACGTTGGACTAGGGTGGCAAACAATGGAAAGCAGTTTGAATGTAGCATTAAGAGACGCACCTCAAGTACATTGA
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| Protein seq | MGNQCQNGTLGSDYHNRFPREHAVGYVQGDSYLDLKKFDDTWPEVNNFKPTAASILRRGLDPTSINVLGRKTADLREHYIIGRKLGQGQFGTTYLCTEINTGCEYACKTIPKRKLITKEDVEDVRREIQIMHHLSGHKNVVAIKDVYEDGQAVHIVMELCAGGELFDRIQEKGHYSERKAAELIRIIVSIVAMCHSLGVMHRDLKPENFLLLDKDDDLSIKAIDFGLSVFFKPGQVFTELVGSPYYVAPEVLHKRYGPESDVWSAGVILYVLLSGVPPFWAETQQGIFDAVLKGHIDFQSDPWPKISDSAKDLIRKMLSHCPSERLKAHEVLRHPWICENGVATDQALDPSVISRLKQFSAMNKLKKLALRVIAERLSEEEIAGLREMFKAVDTKNRGVITFGELREGLRRFGAEFKDTEIGDIMEAAHNDNNVTIHYEEFIAATLPLNKIEREEHLLAAFTYFDKDGSGYITVDKLQRACGEHNMEDSLLEEIISEVDQNNDGQIDYAEFVAMMQGSNVGLGWQTMESSLNVALRDAPQVH |
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| Function | Calcium-dependent protein kinase 7 [UniProtKB/Swiss-Prot:P53684] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0128700 | OsNip_03t0128700-01 | Chr03 | 1625098 | 1629527 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGGAATCAGTGCCAGAACGGGACTCTTGGGAGTGATTACCACAATCGGTTCCCAAGGGAGCATGCCGTTGGGTACGTTCAGGGGGATAGCTACTTGGACTTGAAGAAGTTCGATGATACTTGGCCTGAGGTGAACAACTTCAAGCCTACTGCTGCTAGTATTCTCAGGCGGGGGTTGGATCCTACATCTATCAATGTCCTTGGGCGGAAGACAGCGGACCTAAGGGAGCATTATATCATTGGTCGGAAGCTTGGTCAGGGCCAGTTTGGCACAACTTACCTCTGTACCGAGATCAATACAGGGTGTGAGTATGCTTGCAAGACCATCCCAAAGCGCAAGCTCATCACCAAGGAGGATGTAGAAGATGTGCGCCGTGAGATTCAGATAATGCACCATTTGTCGGGCCACAAGAATGTTGTTGCAATCAAGGATGTCTATGAGGATGGGCAAGCGGTGCACATTGTGATGGAGCTCTGCGCTGGTGGGGAGCTCTTTGACAGGATTCAGGAGAAGGGGCATTACAGCGAGCGGAAGGCTGCAGAGCTTATAAGAATAATTGTCAGCATTGTGGCTATGTGCCATTCGCTCGGGGTGATGCACCGTGATCTTAAGCCAGAAAATTTCCTCCTTTTGGATAAAGATGATGATCTGTCAATAAAGGCAATAGATTTTGGTCTATCCGTGTTCTTCAAACCAGGTCAGGTTTTCACTGAGCTGGTTGGGAGTCCATATTATGTTGCTCCTGAGGTATTGCACAAACGTTATGGACCAGAATCTGATGTGTGGTCAGCTGGAGTGATACTTTACGTTTTGCTGAGTGGAGTGCCACCATTTTGGGCAGAGACACAACAAGGAATATTTGATGCAGTTCTGAAGGGTCACATTGATTTTCAATCTGATCCATGGCCAAAGATATCTGACAGTGCAAAGGATCTTATAAGAAAAATGCTCTCTCATTGCCCTTCGGAGCGTTTGAAGGCCCATGAAGTGCTAAGGCATCCTTGGATCTGTGAAAATGGAGTTGCCACTGATCAAGCTCTGGATCCCAGTGTTATCTCTCGGCTCAAACAATTCTCTGCAATGAACAAGTTAAAGAAGTTGGCTCTGAGAGTGATAGCTGAGCGTCTTTCAGAGGAGGAGATTGCTGGGTTAAGAGAAATGTTCAAGGCAGTGGACACAAAAAATAGAGGTGTAATCACTTTCGGTGAGCTTAGAGAAGGTTTAAGAAGATTTGGCGCTGAATTTAAGGATACAGAGATTGGTGATATAATGGAAGCGGCACACAACGACAATAATGTAACAATCCATTATGAAGAATTTATTGCTGCAACTCTACCTCTTAACAAGATAGAACGTGAGGAGCACCTGCTGGCAGCTTTTACATATTTTGACAAAGATGGGAGTGGTTATATCACAGTTGACAAGCTTCAACGAGCTTGTGGAGAACATAACATGGAGGATTCACTCCTTGAAGAGATTATTTCAGAGGTTGATCAAAACAATGACGGCCAAATTGACTACGCCGAATTTGTAGCCATGATGCAAGGCAGCAACGTTGGACTAGGGTGGCAAACAATGGAAAGCAGTTTGAATGTAGCATTAAGAGACGCACCTCAAGTACATTGA
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| Protein seq | MGNQCQNGTLGSDYHNRFPREHAVGYVQGDSYLDLKKFDDTWPEVNNFKPTAASILRRGLDPTSINVLGRKTADLREHYIIGRKLGQGQFGTTYLCTEINTGCEYACKTIPKRKLITKEDVEDVRREIQIMHHLSGHKNVVAIKDVYEDGQAVHIVMELCAGGELFDRIQEKGHYSERKAAELIRIIVSIVAMCHSLGVMHRDLKPENFLLLDKDDDLSIKAIDFGLSVFFKPGQVFTELVGSPYYVAPEVLHKRYGPESDVWSAGVILYVLLSGVPPFWAETQQGIFDAVLKGHIDFQSDPWPKISDSAKDLIRKMLSHCPSERLKAHEVLRHPWICENGVATDQALDPSVISRLKQFSAMNKLKKLALRVIAERLSEEEIAGLREMFKAVDTKNRGVITFGELREGLRRFGAEFKDTEIGDIMEAAHNDNNVTIHYEEFIAATLPLNKIEREEHLLAAFTYFDKDGSGYITVDKLQRACGEHNMEDSLLEEIISEVDQNNDGQIDYAEFVAMMQGSNVGLGWQTMESSLNVALRDAPQVH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.144250 | 2.129386 | 15.740503 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g03660 | RBH | 1.959387 | 1.321721 | 3.746628 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0128700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0002280 | RBH | 2.369782 | 85.535324 | 14.152196 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0002250 | RBH | 0.737338 | 16.386963 | 7.244877 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0002270 | RBH | 3.261928 | 82.062157 | 23.522017 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0002260 | RBH | 0.395678 | 1.481594 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0002300 | RBH | 4.863211 | 37.891521 | 40.416599 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0025800 | RBH | 15.649701 | 40.5043775 | 15.546731 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0002240 | RBH | 0.547725 | 3.841106 | 3.138892 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0026600 | RBH | 20.065931 | 54.8650475 | 23.768439 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0002330 | RBH | 0.376401 | 0.803233 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0002330 | RBH | 0.993065 | 40.518013 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0002300 | RBH | 12.603448 | 81.395660 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0002340 | RBH | 1.997377 | 4.658119 | 3.200579 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0002320 | RBH | 0.642932 | 23.859564 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G002320 | RBH | 1.657159 | 7.945010 | 6.105601 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0002150 | RBH | 2.752325 | 82.524162 | 19.149734 |
