Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0110900 | OGI:03001700 | 12/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:636744-639511 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTTCAACTGGCAGATATCCCACCACAGCTCTTCCAAGGCTCCAACCCCAAATCCAAGCCATAAAACCTTTGCAACAACCATGAGAGCTAAGCTTCCAAGCTCTGAATTTTCAGGATGTTGATGCCAGCTTCTGCTCAGATCCCTCATCACACAATACGTCCTGTTGCAAGTTACTTAGTTCTGCATCGACGGCGCCGGCACAAGTCTGACCGGCGTGAGTTCTTGATCTCATCTTGGGGTTCAATCCTAATGCATTTTCAGTTTAGCATATGGCCAAAGTTGAGTTAACCATATTCCTCATGCAGGTTTTAGATTGCAGGGTCCTACGAGGAGGGTGGTCTTTTGCACTCGCAGTGTGCTAGGTTCCAGCAATGGCGCGCCATCTGGTGGCCTTGTCAAGAAAAGGTGTGCGACTCCGTATTTTGCACTGCTAGGTCAGCATGAGATCATGAAAAGAGAAATGTCCATCCTTAAATTTACATTGTGAAAGAACAATACTTTCATCCAATTAACCTCTAAAGTTCTGCATACTATCATTTTACTTTTCCTGATTCCTGAATATATATATATAGCACCTACTTCAGAAGACCTTAGTATAATAGTACATGATAGTCTGGAGTATATAGATGGACAGTCTGACTTGGTGAACTATGGCAGAAAGATTGTGGAGCACATCATTCTGCTTAGAGCCAAGCCAAATATCTCGGACGCTGAAGAAAAGGACATGCTAGATTACTTGTATACTTCTCAGTATCAGATGAGAGGGATTCTAGCTGTGTCATTAGGTGAGAAGTTTTTATATATATGTATTTATTGATGAAGAATTCTCCAAAGTAATGTGTTGTGTTTTGATATCCGTCTATCTCTTGGATGCAGGGCGCATAGAGGATCCCAACACAGAGAACTTTACGCATGCTGTTTTGATGCGTTTTCAGCAGAAAGACGACATTGCAAAGTTCCACAGTAGTCCCTACTACTACAAAATTCTCGATGAGCACGTAAAACCCGTTTCATATGTACGCCTCAGCATGTAATCTTCTTTCTGGTTCTTACAAAATTCTGACTATTTGTTGTCCATTGCATTGTGAGAGTCACTGGTTGGATAACTTACAGGGCTCGGTTTCTGTAGATTTTGAATCTGAAGTTGAAGATGACATTATCCCTCTCTTCCGTCGGGGAGAGGTAATTCAAGATGGCATCAAGCTGGAGCTCAAATTGTTATTCTTTGGTTTGGTCTTGTAAGATATTCCACAAACTTTGTTTGTGAGCCTAAGTTTGCTTCTTCCAACAGGATTTTAACTATGGAGTGGAGTTCATGCTACTGATATCTTTCTTGGAAAGTGCATCTGGAGATTCAGTGGAGGATGCATTAGCTTCTCTTCAGAGGTTCATCAGTCAATGCAGTTCTTTCATTGTTCAGGCAACCTTAGGTATGACAAAATGGTATCTGTGTCATTTCTTCCGACACATTTTCACAAAACTTTCCATTTTTCCTCAATCTCAGATAATAAAGTGTGATGTTTTACATGTACCAGGCTGCTGTCTGAATCATATGGACAGTGGTTACAGTCATGCTGCAGTTATCCGTTTTCCGTCATGTAAGTGATCAATAATTCTAATTTGTCCTTGAAATTAAAAATCCATATAAATGCAGAACAAAGCTGGATAATTTTCTTTTTTAGAAAATGGGATAAACCTGGCCTCTACATCCAATTGGATGTACGCAGCCAACAAAGCTGGATTATGGACAGATTGTGTATCAAAAAGGCTCCTTAGTGAATTTATTTGTTTCCTGCAGTTGATGACTTCAAGATATTCAGGGAGGGGATGGAATACAAGGATGTAAGGCTTCTCTACTTGCATGAATTCACATTTGATATCTGGACAAAAAAAATGATAGAAGCAAATAACTGTGAAAATTGGTCTTGCTTCCTGTTCAATTCCTTTCTGGCAAATTTCAGAACCTGCTGTTGTATACAGAAACAATGGGCTGGTTGACAGTTTTGTGGGAGGGGGTCTCTTACCCTAACCTATTGCATTGGAAATAATAAACATGAATCGAACTAGATTTACATAATTATGATACACTTGTAACTAGTAGAGGAATGCTTGAACACTGAATTATTGCACCAAAATATAGCCCTTAGTTGAGTTGTTTACAGGGAGCAAGTATGTACATGCACGCACTCACTCTGTTAACAGCTGCATGATGTGAAGTACTGAAAATTGACAATGCCTTGTGAAATACAGATGTGGGCATCAACATTTCAACCGATTGTGGAGAAATCTCTTGAGCTACACTTCACAGTTGATCCCGTGGGTAACCAGCTGATGTAGATTCTGAGCACCTGACAAAATATTCAGTCCTGGATTGGACGTATATATTGTTGGTAAACTCCTGAGTTGCTGATGAGGGAAAAGTATTGAAATGAAATCTTGAGGTTTTACATAGGCGATTGTGTTCATCACATAAACGCCTTCCTTTTCCTTGCCCGGAATGCAAGAACGAGAGATACCTTGAAAATGTTTTATCCTGTCATGAATGTACCTCAATCGCAAGATGTACAGTGTGGTTGGACCGGCTGGTTGGTTAATTATATTGGTCCTGACATGTTCCTATCCTAATTAATCTCCTGTTTGTGGGGAAAACGAAGAATAAGTATGTCATTTTCATCTAGCTGGGTTGCCTGCATCTGCATGCTAGCTAGCTACTGTAAATGATGCGTACGTATGCTCATGAATGAATTCGCAAGCGATCGCCGCACCAT
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| CDS seq | ATGTTGATGCCAGCTTCTGCTCAGATCCCTCATCACACAATACGTCCTGTTGCAAGTTACTTAGTTCTGCATCGACGGCGCCGGCACAAGTCTGACCGGCGTTTTAGATTGCAGGGTCCTACGAGGAGGGTGGTCTTTTGCACTCGCAGTGTGCTAGGTTCCAGCAATGGCGCGCCATCTGGTGGCCTTGTCAAGAAAAGAAAGATTGTGGAGCACATCATTCTGCTTAGAGCCAAGCCAAATATCTCGGACGCTGAAGAAAAGGACATGCTAGATTACTTGTATACTTCTCAGTATCAGATGAGAGGGATTCTAGCTGTGTCATTAGGGCGCATAGAGGATCCCAACACAGAGAACTTTACGCATGCTGTTTTGATGCGTTTTCAGCAGAAAGACGACATTGCAAAGTTCCACAGTAGTCCCTACTACTACAAAATTCTCGATGAGCACGTAAAACCCGTTTCATATGGCTCGGTTTCTGTAGATTTTGAATCTGAAGTTGAAGATGACATTATCCCTCTCTTCCGTCGGGGAGAGGATTTTAACTATGGAGTGGAGTTCATGCTACTGATATCTTTCTTGGAAAGTGCATCTGGAGATTCAGTGGAGGATGCATTAGCTTCTCTTCAGAGGTTCATCAGTCAATGCAGTTCTTTCATTGTTCAGGCAACCTTAGGCTGCTGTCTGAATCATATGGACAGTGGTTACAGTCATGCTGCAGTTATCCGTTTTCCGTCATTTGATGACTTCAAGATATTCAGGGAGGGGATGGAATACAAGGATATGTGGGCATCAACATTTCAACCGATTGTGGAGAAATCTCTTGAGCTACACTTCACAGTTGATCCCGTGGGTAACCAGCTGATGTAG
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| Protein seq | MLMPASAQIPHHTIRPVASYLVLHRRRRHKSDRRFRLQGPTRRVVFCTRSVLGSSNGAPSGGLVKKRKIVEHIILLRAKPNISDAEEKDMLDYLYTSQYQMRGILAVSLGRIEDPNTENFTHAVLMRFQQKDDIAKFHSSPYYYKILDEHVKPVSYGSVSVDFESEVEDDIIPLFRRGEDFNYGVEFMLLISFLESASGDSVEDALASLQRFISQCSSFIVQATLGCCLNHMDSGYSHAAVIRFPSFDDFKIFREGMEYKDMWASTFQPIVEKSLELHFTVDPVGNQLM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0110900 | OsNip_03t0110900-01 | Chr03 | 636744 | 639366 | + | RAP2018-11-26 | ||
| CDS seq | ATGTTGATGCCAGCTTCTGCTCAGATCCCTCATCACACAATACGTCCTGTTGCAAGTTACTTAGTTCTGCATCGACGGCGCCGGCACAAGTCTGACCGGCGTTTTAGATTGCAGGGTCCTACGAGGAGGGTGGTCTTTTGCACTCGCAGTGTGCTAGGTTCCAGCAATGGCGCGCCATCTGGTGGCCTTGTCAAGAAAAGAAAGATTGTGGAGCACATCATTCTGCTTAGAGCCAAGCCAAATATCTCGGACGCTGAAGAAAAGGACATGCTAGATTACTTGTATACTTCTCAGTATCAGATGAGAGGGATTCTAGCTGTGTCATTAGGGCGCATAGAGGATCCCAACACAGAGAACTTTACGCATGCTGTTTTGATGCGTTTTCAGCAGAAAGACGACATTGCAAAGTTCCACAGTAGTCCCTACTACTACAAAATTCTCGATGAGCACGTAAAACCCGTTTCATATGGCTCGGTTTCTGTAGATTTTGAATCTGAAGTTGAAGATGACATTATCCCTCTCTTCCGTCGGGGAGAGGATTTTAACTATGGAGTGGAGTTCATGCTACTGATATCTTTCTTGGAAAGTGCATCTGGAGATTCAGTGGAGGATGCATTAGCTTCTCTTCAGAGGTTCATCAGTCAATGCAGTTCTTTCATTGTTCAGGCAACCTTAGGCTGCTGTCTGAATCATATGGACAGTGGTTACAGTCATGCTGCAGTTATCCGTTTTCCGTCATTTGATGACTTCAAGATATTCAGGGAGGGGATGGAATACAAGGATATGTGGGCATCAACATTTCAACCGATTGTGGAGAAATCTCTTGAGCTACACTTCACAGTTGATCCCGTGGGTAACCAGCTGATGTAG
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| Protein seq | MLMPASAQIPHHTIRPVASYLVLHRRRRHKSDRRFRLQGPTRRVVFCTRSVLGSSNGAPSGGLVKKRKIVEHIILLRAKPNISDAEEKDMLDYLYTSQYQMRGILAVSLGRIEDPNTENFTHAVLMRFQQKDDIAKFHSSPYYYKILDEHVKPVSYGSVSVDFESEVEDDIIPLFRRGEDFNYGVEFMLLISFLESASGDSVEDALASLQRFISQCSSFIVQATLGCCLNHMDSGYSHAAVIRFPSFDDFKIFREGMEYKDMWASTFQPIVEKSLELHFTVDPVGNQLM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0110900 | OsNip_03t0110900-02 | Chr03 | 636832 | 639511 | + | IsoSeq | ||
| CDS seq | ATGCTGCAGTTATCCGTTTTCCGTCATTTGATGACTTCAAGATATTCAGGGAGGGGATGGAATACAAGGATATGTGGGCATCAACATTTCAACCGATTGTGGAGAAATCTCTTGAGCTACACTTCACAGTTGATCCCGTGGGTAACC |
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| Protein seq | MLQLSVFRHLMTSRYSGRGWNTRICGHQHFNRLWRNLLSYTSQLIPWVT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 18.867575 | 13.893129 | 8.716278 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g02020 | RBH | 12.341976 | 9.381747 | 2.245794 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0110900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0000960 | SBH | 2.309366 | 14.254322 | 5.215779 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0000940 | SBH | 5.850554 | 1.436269 | 8.598313 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0000960 | SBH | 2.493253 | 4.862382 | 13.367157 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0000950 | SBH | 0.763371 | 0.436852 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0000970 | RBH | 50.659752 | 9.722352 | 27.084772 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0010000 | RBH | 59.7703895 | 2.378692 | 0.5421535 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0000950 | RBH | 2.034524 | 0.390612 | 1.856236 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0009600 | RBH | 32.977175 | 0.8808215 | 3.6997215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0001000 | RBH | 3.127680 | 0.424654 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0001020 | RBH | 5.214345 | 13.943072 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0000970 | RBH | 43.703140 | 16.055082 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0000980 | RBH | 5.289683 | 1.234202 | 3.559460 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0000990 | RBH | 3.634585 | 3.363887 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G000990 | RBH | 6.092290 | 2.377667 | 4.262039 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0000870 | RBH | 13.793283 | 14.975452 | 19.588385 |
