Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0828533 | OGI:02083900 | 7/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:35598560-35600678 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTACATCTAAATCTCCTGGCTGTTTAGTTTGGCATTGATTACCATATTGATTCTGTTTTAATGATTGAAAGAGAGGCTCACTAGTTTCTTGTATTGGTTATTTGCAAAAAAAAAATGATGGATGGTTTCAAGTGCATTGCTAAGGAGGCTGAGTTGATTTCTGAATGGCTGAGGCATGGGCGCCGTATGCTTACCGATGATGAGTACACCTTGTGCCATGAAATCCGGGCTGTTGCTTGTAAACTTTTTGTTATCCGTGGGGAGTGGACTGTTGATATTGCTTCTGCCCTTCTGGTATGTGCATGCCTGCCTTCACCTAACCACATTCTGGTATGCTTGTCTAAAGTTTGTGTCACTTGAATTTGATCAATTTATTTGCACCATCAGGGTATCAGAAAGGAGGCTGAGTGGTTGATTGAGAACTTGAAGCGTTTTCCTGTTGAATCCATTAGTACCTCCATGAAGATTCGACAATTTGCCTTGGATTTTGTGTGGGAAAAGATTGGTGAGTATGCATCATATAAGAATAAGGAGAGCAGTGAAAGTGAAATGGCTTCTGAAAGTGATGCCGATGTCACTGAAAGCAATGATAACGACTATATGGTACGGTGTATGTTGTGAAAAATATGCTCTTGATTTTACTCAATGGAGATATCAATCTCATGCTACATATATAGCTGACTCACATGTATGGTTTTGGATTGTTGCCAGGTTTGCTATGACGAAGACTACTTGAAACTTGGTATATGAACGCATGTTGAGACTTGAGACCAAATATATCAGGCACAAGGTCTCGCCCCCTTCACCCGCACACGAGGCAATATCTTCATGATCAAAGCAAGAGTAAAGTAAAGACTGAGTTAACTAGATATCTCGAAGATATTCCTCAAGAAAATGATTTCCCTGATGATGATTTTGACATACTCCAGTGGTGGAGGGTGAACTCTTGCAAATATCCAATATTATCACGCATGGCACTTGATTTGCTTGCTGTCCCTGCATCCTCAGTTGCATCAGAGTCTGCATTTTCTACTGGATCAAGAATCATTAGCGACTATAGGAGTAGGTTGGCTAGTGGAACTGTGGAGGCATTGGTTTGCCTTCAAGATTGGATGCGAGCCGATGGTATGAAGCCTACTTTAGTTGTGCATTGCTACTTATATTATGGGCCATGAACTTATTTATGTTGAACTTTTGTATTCTGATGTTTTAGGTTTTGGTGATCCATATTCAATTCTAACTGATACGGCTGAGGGCGATGATGTTAATATGCAACTATTAGGTATTCAAATTACTTGATTTTATATTTCTGTATGTCTAATTGAATATGGGTACTATGATGATCTAATAATAATTTACAATTTATTCTACATTTGCTTCTTAAATGAGTTGCTAGATCTGGAAAAAGAGTTGTGTACACATGCTGCATTACCCCCTCACCATGGTCATAAAACTGTAACTGAATTGTTTCTGTTCCTTAAATAGTACTACATAATTTTATCTTCATTTCTAGGTAGTTTGGACCTCTCTTTTTCTGGGGGTCAGATTCACTTCTATTCTGTTAGATTGCTTTTAAATTCAATCCAAGATGTTCTGGCACTGGCAATGTAGATTATGTTCCAACTTTTAACCCCTTTTTTTGTCACTGGGCAGGACATTAAATCATTTGACATCTCAGGCAAATTACCATGTGAGTTCTATGCAATCTGGGTTCTGAGAAATTTTGCTAGTTCTGGAGCAGTGGTCAGTGGAGCTTGCTTAGTTTCCCAGCTCATATCAGTGTTTCCCACACATGTCAGATTACATCCAAAATTTGTATGATGTATTGGAAATTTAGTTGAGCCTGGGATTTCTGGACTTCTTTTCTGCCGTTGAGCCTGAAATTCATATTTGATTTTGCCTGGTGAATTCTGCATGAGTGACAGGAATAGATGCAAGGATCAGGCGGCTTTGTTGCTGTCAGGATATGCATGTCTTTTGAGTCCTTTTTTTCCCCTTTATGCTGTTGTTAAGCTATGAATATTTTGGAAAGGGATTTTTTTAGGACAATTTGATTAAGGATCGGTGGATTTTTATGCCAAATTGTAGACTCTGCTTTTCGCTGCAGTCACTGTCTTTC
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| CDS seq | GACTTGAGACCAAATATATCAGGCACAAGGTCTCGCCCCCTTCACCCGCACACGAGGCAATATCTTCATGATCAAAGCAAGAGTAAAGTAAAGACTGAGTTAACTAGATATCTCGAAGATATTCCTCAAGAAAATGATTTCCCTGATGATGATTTTGACATACTCCAGTGGTGGAGGGTGAACTCTTGCAAATATCCAATATTATCACGCATGGCACTTGATTTGCTTGCTGTCCCTGCATCCTCAGTTGCATCAGAGTCTGCATTTTCTACTGGATCAAGAATCATTAGCGACTATAGGAGTAGGTTGGCTAGTGGAACTGTGGAGGCATTGGTTTGCCTTCAAGATTGGATGCGAGCCGATGGTTTTGGTGATCCATATTCAATTCTAACTGATACGGCTGAGGGCGATGATGTTAATATGCAACTATTAGGACATTAA
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| Protein seq | DLRPNISGTRSRPLHPHTRQYLHDQSKSKVKTELTRYLEDIPQENDFPDDDFDILQWWRVNSCKYPILSRMALDLLAVPASSVASESAFSTGSRIISDYRSRLASGTVEALVCLQDWMRADGFGDPYSILTDTAEGDDVNMQLLGH |
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| Function | Putative AC transposase [UniProtKB/Swiss-Prot:P08770] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0828533 | OsNip_02t0828533-01 | Chr02 | 35598560 | 35600678 | + | RAP2018-11-26 | ||
| CDS seq | GACTTGAGACCAAATATATCAGGCACAAGGTCTCGCCCCCTTCACCCGCACACGAGGCAATATCTTCATGATCAAAGCAAGAGTAAAGTAAAGACTGAGTTAACTAGATATCTCGAAGATATTCCTCAAGAAAATGATTTCCCTGATGATGATTTTGACATACTCCAGTGGTGGAGGGTGAACTCTTGCAAATATCCAATATTATCACGCATGGCACTTGATTTGCTTGCTGTCCCTGCATCCTCAGTTGCATCAGAGTCTGCATTTTCTACTGGATCAAGAATCATTAGCGACTATAGGAGTAGGTTGGCTAGTGGAACTGTGGAGGCATTGGTTTGCCTTCAAGATTGGATGCGAGCCGATGGTTTTGGTGATCCATATTCAATTCTAACTGATACGGCTGAGGGCGATGATGTTAATATGCAACTATTAGGACATTAA
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| Protein seq | DLRPNISGTRSRPLHPHTRQYLHDQSKSKVKTELTRYLEDIPQENDFPDDDFDILQWWRVNSCKYPILSRMALDLLAVPASSVASESAFSTGSRIISDYRSRLASGTVEALVCLQDWMRADGFGDPYSILTDTAEGDDVNMQLLGH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g58170 | SBH | 0.156277 | 0.525731 | 1.350680 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0828533 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0039640 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0039670 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0039570 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0039210 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0039120 | SBH | 0.699096 | 4.828263 | 11.833127 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0558200 | RBH | 0.012255 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0038810 | SBH | 0.135988 | 0.337407 | 0.934634 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0512200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0039080 | SBH | 0.031056 | 0.053722 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0010770 | SBH | 0.448355 | 2.634545 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0039150 | SBH | 0.0 | 3.718841 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0039160 | SBH | 0.0 | 0.0 | 0.487388 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0038820 | SBH | 0.0 | 0.685111 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G010990 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0010780 | SBH | 0.000000 | 0.0 | 0.0 |
