Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0801255 | OGI:02096170 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:34144181-34144648 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATTTGGCGCATGTGGCTAATGCCTCTTTCAGGCATCCAGGCGCCGGAGCCCAGCCACACTGGTTTTCGACGTGGTTGACGCACTCTTTAATGTGACCTGGGAAGTGACTGGCTATGTAAATTAATATTGCTTTGCTCAGATGGCCAAAGATAAATTTCTCTTCATCGTTGGCGCGATCACCTAAACAAAAGAAGAAAGAAAAAGCATATATGCACAAGTAAGGACAGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGCAGATGAAAAGATCGATACTACAGTACTACTTAAGAGATGACAAGATGATGTACCTGTACCACCAGTCCCACGGGCGCTGCCTCCAGCGGCAGCGGCGGCCGCTACCTCCGTCATTAGGAGAATGACGATAAAAACAGCATACGCGACCTTCTTTGAGTCCAT
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| CDS seq | ATGGACTCAAAGAAGGTCGCGTATGCTGTTTTTATCGTCATTCTCCTAATGACGGAGGTAGCGGCCGCCGCTGCCGCTGGAGGCAGCGCCCGTGGGACTGGTGGTACAGGTGATCGCGCCAACGATGAAGAGAAATTTATCTTTGGCCATCTGAGCAAAGCAATATTAATTTACATAGCCAGTCACTTCCCAGGTCACATTAAAGAGTGCGTCAACCACGTCGAAAACCAGTGTGGCTGGGCTCCGGCGCCTGGATGCCTGAAAGAGGCATTAGCCACATGCGCCAAATAA |
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| Protein seq | MDSKKVAYAVFIVILLMTEVAAAAAAGGSARGTGGTGDRANDEEKFIFGHLSKAILIYIASHFPGHIKECVNHVENQCGWAPAPGCLKEALATCAK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0801255 | OsNip_02t0801255-00 | Chr02 | 34144181 | 34144648 | - | RAP2018-11-26 | ||
| CDS seq | ATGGACTCAAAGAAGGTCGCGTATGCTGTTTTTATCGTCATTCTCCTAATGACGGAGGTAGCGGCCGCCGCTGCCGCTGGAGGCAGCGCCCGTGGGACTGGTGGTACAGGTGATCGCGCCAACGATGAAGAGAAATTTATCTTTGGCCATCTGAGCAAAGCAATATTAATTTACATAGCCAGTCACTTCCCAGGTCACATTAAAGAGTGCGTCAACCACGTCGAAAACCAGTGTGGCTGGGCTCCGGCGCCTGGATGCCTGAAAGAGGCATTAGCCACATGCGCCAAATAA
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| Protein seq | MDSKKVAYAVFIVILLMTEVAAAAAAGGSARGTGGTGDRANDEEKFIFGHLSKAILIYIASHFPGHIKECVNHVENQCGWAPAPGCLKEALATCAK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.823425 | 3.324209 | 41.933994 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g55770 | RBH | 1.455702 | 1.965416 | 1.397863 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0801255 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0037310 | RBH | 1.436874 | 0.000000 | 108.399017 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0036850 | RBH | 0.188071 | 0.063631 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0037030 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0558700 | RBH | 4.9236185 | 14.8340275 | 24.7021055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0588800 | RBH | 4.559023 | 17.2407485 | 19.905865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0037010 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0036720 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0037150 | RBH | 6.090285 | 19.222601 | 44.207127 |
