Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0787000 | OGI:02094370 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:33427245-33427781 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGAAGGGCTTCTGCCCCATGATGTTGCCCTGCGGCTCGTAGTGGCACGCCATGAGCGTCTCGCCGGAGGAGCAGGTGACGGTGGCGCAGCCGACCTGCGTGCTGTCGCGCCACATCATCTGCTTGTAGTGGCCGCACTCCTTGCCCGCCGCGCACGCGTTGGCGCCGTAGTCGTAGTGCTGCGCCTCCTCCGCCCACGCCGCCACCGCGTCGCTCGGCTGCCACGCCTCGCCGCCGTAGCCGCGGAACACGTTCACGCCGCCCGCCGCCGACGCCGCCGACGCCGCCGCGCAGTCGCCCTTGTACTGGTCCGCCCACCGCGTCGCCAGGTCCGCCAGGTCGCTGCTCCACTTGAGCGGGTGCAGGCCGTAGATCGCGCGGAGGTGCGTCTGCGGCACCACGAACTGCTGCGCCTCGCTGATCTGCAGCAGCCGCCGCGGCGCGCCGCCGGCGGCGCCGCCGAGCGTGCGCGACGACAGGAGCAGCACGGCGGCCAGCGCGACGCAGCAGGAGACCCTCCTTGAGCTGTACTCCAT
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| CDS seq | ATGGAGTACAGCTCAAGGAGGGTCTCCTGCTGCGTCGCGCTGGCCGCCGTGCTGCTCCTGTCGTCGCGCACGCTCGGCGGCGCCGCCGGCGGCGCGCCGCGGCGGCTGCTGCAGATCAGCGAGGCGCAGCAGTTCGTGGTGCCGCAGACGCACCTCCGCGCGATCTACGGCCTGCACCCGCTCAAGTGGAGCAGCGACCTGGCGGACCTGGCGACGCGGTGGGCGGACCAGTACAAGGGCGACTGCGCGGCGGCGTCGGCGGCGTCGGCGGCGGGCGGCGTGAACGTGTTCCGCGGCTACGGCGGCGAGGCGTGGCAGCCGAGCGACGCGGTGGCGGCGTGGGCGGAGGAGGCGCAGCACTACGACTACGGCGCCAACGCGTGCGCGGCGGGCAAGGAGTGCGGCCACTACAAGCAGATGATGTGGCGCGACAGCACGCAGGTCGGCTGCGCCACCGTCACCTGCTCCTCCGGCGAGACGCTCATGGCGTGCCACTACGAGCCGCAGGGCAACATCATGGGGCAGAAGCCCTTCTGA
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| Protein seq | MEYSSRRVSCCVALAAVLLLSSRTLGGAAGGAPRRLLQISEAQQFVVPQTHLRAIYGLHPLKWSSDLADLATRWADQYKGDCAAASAASAAGGVNVFRGYGGEAWQPSDAVAAWAEEAQHYDYGANACAAGKECGHYKQMMWRDSTQVGCATVTCSSGETLMACHYEPQGNIMGQKPF |
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| Function | Pathogenesis-related protein 1 [UniProtKB/Swiss-Prot:Q05968] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0787000 | OsNip_02t0787000-00 | Chr02 | 33427245 | 33427781 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGTACAGCTCAAGGAGGGTCTCCTGCTGCGTCGCGCTGGCCGCCGTGCTGCTCCTGTCGTCGCGCACGCTCGGCGGCGCCGCCGGCGGCGCGCCGCGGCGGCTGCTGCAGATCAGCGAGGCGCAGCAGTTCGTGGTGCCGCAGACGCACCTCCGCGCGATCTACGGCCTGCACCCGCTCAAGTGGAGCAGCGACCTGGCGGACCTGGCGACGCGGTGGGCGGACCAGTACAAGGGCGACTGCGCGGCGGCGTCGGCGGCGTCGGCGGCGGGCGGCGTGAACGTGTTCCGCGGCTACGGCGGCGAGGCGTGGCAGCCGAGCGACGCGGTGGCGGCGTGGGCGGAGGAGGCGCAGCACTACGACTACGGCGCCAACGCGTGCGCGGCGGGCAAGGAGTGCGGCCACTACAAGCAGATGATGTGGCGCGACAGCACGCAGGTCGGCTGCGCCACCGTCACCTGCTCCTCCGGCGAGACGCTCATGGCGTGCCACTACGAGCCGCAGGGCAACATCATGGGGCAGAAGCCCTTCTGA
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| Protein seq | MEYSSRRVSCCVALAAVLLLSSRTLGGAAGGAPRRLLQISEAQQFVVPQTHLRAIYGLHPLKWSSDLADLATRWADQYKGDCAAASAASAAGGVNVFRGYGGEAWQPSDAVAAWAEEAQHYDYGANACAAGKECGHYKQMMWRDSTQVGCATVTCSSGETLMACHYEPQGNIMGQKPF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g54570 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0787000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0036330 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0036430 | RBH | 0.000000 | 3.037082 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0036270 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0035860 | RBH | 0.0 | 0.627060 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0036050 | RBH | 0.0 | 35.920513 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0546900 | RBH | 0 | 1.7682305 | 0.0311495 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0035870 | RBH | 0.0 | 0.936626 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0577600 | RBH | 0 | 0 | 0.0533995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0036130 | RBH | 0.0 | 0.561938 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0035950 | RBH | 0.0 | 24.738480 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0036190 | RBH | 0.0 | 3.167892 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0036150 | RBH | 0.0 | 1.875384 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0035760 | RBH | 0.0 | 6.720689 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G036400 | RBH | 0.0 | 11.306378 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0036140 | RBH | 0.0 | 9.750147 | 0.0 |
