Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0785600 | OGI:02095790 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:33349102-33353623 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GACAAATAACTAATTCATAGACCGACAAAATAACTTAGTCTGTTGCAATGATCCATACATCAACATTCGACAAAAGAAATTAGGCCATTACAACGATCCATACTGCCAATAGATGGTAACAACACAAGTGTTCTTACATGACACCAGCGAATTACTAAAAATTACTTTATAACTAGATTATCTTTCTCAAGCAGAACCAAAACAAGCTGCCAGCCTACCAAATTGAGCATCTTCACTACCTGTCATTAAAGCAACATTATTTCCATAGAAAATAGGAGGCTGATGATTATAGAACAATTGTAGCATATAATCTGGATGGCAAAACAACTAGAAGGAAGTAGTACTACTATTTTAAGTAGAAACAAAAGGACTATTAAAGGACTTATTTGATTATGTTGTTCTTTGGACTGTACAGTGCAAGTAGACATGTACATACCTCCCAAAACCATAGCAGAAAGCACCAAAAAGCTAGCACCAAAGTTTTCCATTGTCCCTGAAATAAATAAATAAAAATGATAAATGAATTAAGATGCTTGCAATTGTAATTGAAAATGTGAAAACAAGATGCTTAATGTCCTACCACAACTAAGTACGATGGGTATTGCTAAACTTTTGCCAAATATGTTCAACCAGATCTTTTTTTAGTTGGGAATGTGGTGCACGAGCACGTATTGCAGCTTTCCTACGCAGCACCTGATCAAAGCATGGATTGTGCCCAGTAGTTACTTCAGGAGGAAGAGCAACCGATGCTCCAGGGTCCACATTCAGATCAATAGGAATTTTAACCCCCCCTCTCATTTTCAACTATCATATTATGGAGAATAATACAAGCTTTCATGATTCTCCCAACACTCTTCCGTTTCCACGACCGTGCTGGGCGGCGCACAATATTGAAACGGGACTGCAGGACCCCAAATGCACACTCCACGTCTTTTTTTGCCCCTTCTTGATACTGTGCATATAGCTTGTTATTCTCTGTTTGTGGAGCAGCTATTGACTTCACAAAGGTAGCCCATTCTAGATATATTCCATCAGCAAGGTAGTATCCTATGTTATACTCATTACCATTGACAAAAAACTTTACTCTAGGAGCTTCCCCTTTCAGCACATCAAGAAATAGTAGGGATTGGTTCAGCACATTGATGTCATTATTTGACCCCGCGACACCGAAGAAAGCATGCCATATGCGGAGGTCACGAGTAGCAACCGCTTCGAGGATAATTGTTGGCACTCCATAGTCACCGCGGGTAAACTGCCCTCTCCATGTTGTTGGGCATTTTTCCCACCTCCAATGCATGCAATCAATACTGCCTAGCATCCCAGGAAAGCCCCTAGACTCATTAACTTGAAGCATACGCTCCACATCCTCATATGTGGGACGTCGCAAATACTCTGAACCAAATACCTCAATCACCCCTCGTGCGAACATATCCAAGCACTGCAAGGACGTGCTCTTGCCAATCTTAAGGTACTCATCTAGGCTATCAGCAGGGCTGCCATACGCTAGCATGCGCATTGCAGCTGTGCACTTCTGTAAAGGTGAGAGCCCTTGGCGACCACTGCAATCTACCTTTAGTGTAAAGTAAGGAGACACCTTCCAAGGGCACTCACTATGCGAAGAAAAATGGGTCTTCCCATACGAAATCTTGTACAGAACATGCTCTCAAGGTAAAGAGGGTCTTCACTGAAGTAGTCAGCTATGAGACGATGATGTGCTGCTGTGTGATCCCTCTTGATTGTCTTCCTTGTCGCACTCTTCCTTCTGATTTTTCCAATTCTAAGCTTGGTCTTGATCTTTTCCATGACCCTTCTTGCAAAAGAATCTATGAGGTTCTGCTCAACAATGTATTGGTCTATAATTTTGGAAGGATCTAATTCACCAGAATCATCTGGAGACATGGTGGAGACAAGGGGTGCAAGGAATGGGAAAGAAGTGTTGAAAGGAATGACAGAGGGATGGATAGTTAGCACCATTAGACCAATATATATATATATATATATATATACTGTTGGGAATGCATACTAGCTAGTAGCATGTTTATTTGAATTACCCTTAATTAGATTATTGGGAATGCATACACAGAGCATGTTCATTTGGATTACTATTAACTAGACTATTGAGAATTCAAGACTGCATGTTTATCTGCACATTGTTGATTTGACTGCATGTTAATTTTGCAACTGCTGACTTGACTACATGTTTTTCTGGAAATAATAGCTACATGCTGACTATATTACAAGTTAGATTACATCAATATTTGCAACTCTTTGAATTGTGCAAGAAACATATATATGTTTGCAGGAAGTTCAATTGCAGCAAGTAAAAAAAATACAACAAGCTTTAATTAGAGACTGGAAAGTGAAGATACCTTAGTATTACGGAAACAACTTCTCCCTCATACACTTCAATGCCATCAAATGCTCGGATCTAACATCATCAGGCATATCTTTTGTATTTTGTAACATGAGAGACTGATATGTTTCCAACATAACAGCCTCCTTGTGCTCCATGGCTGCAAGGTGCGCTAACTTTTTTGATTCAAGGTTATCACTAGCAACACGCCTCTGAGTCTCTAGTAGTTCATCACGACCTTTATTTGCCATCTCCTGAACTTCTTTAAGCTTGTCAATTTCATCATCAGTATCTGATAGATAAACCTTTGCCTTCCTTTTGCGTTTGCCTTTACCATTACGTTGCGCCTTAGCAGTTTTTGTTCCTATTGGACGTTTAATATCTTCAGGACTGTTAGGAGTGGACATTTGCTCCATCACTTCCACTTCATCATCCATCTTTGGTTTGTTTGGCTTCTCAAGTTCCTCCAAGTAAGCATGCCACTTTGGTTGGTCACGAAGAATGTTCCAACAATGCAGAAATGAAAATGGGCCTTCCTTGTAATCTGCTTGATATGTTGCTTCAGCCTTTTCCCTGAGTTGCATATCATTTTGTCCACTAACATATATGGATTTAACCTCTTTATAAACACAACAGAAACGACCAACATTTTTCTTAATTTTATGAAAACGGTCTTTGATTTGTTTTTCTTGCCTTGTCCTGTTTTTGGGAGTGGTGCTATTATACTCAGCAGTAACATCTCCCCAATAACGATCATTTTTCTTAAAATTACCACTGATCGAATCATTCGAGTTGTTTAGCCAAGCACTCACCTATAATCAAAACAAAACATGATTAGTCCTATACTAGAAATAAAGTAACAGTCAATGAGAAAACACGATTCATTGCCTACATCCTTATTTACTTACTAGTCTTATGTCCTCCTCTGTTGACCATGTCAACCGCTTCTCAGTCCTAACAGTGGGGGCTTCTTCATCACCACTATCAATGTTGACAGGTTGTTGTGCTCCTGTACGTAATTTTGAACATGGTGCTACTTGTTCAGCAGGATAATAATTTGGAGGCACAAAAGGTCGATGATTCTGTAAAATTGATTGATCCTAAAAGTAACTTAAGAAACCACCAGGCGGATGAAAGTCCATACCACTGCAAGAAAAAGACAAAGATCCAAAATTATTGCCATATAACATCCTTAGCACTTTTTTCTCTTCATCTGTAAATGAGTACATTAAAATTTGACAAAGCACAGCCTATGATACTAATAATTCTCATGCCATATAAAGTTACTATTTTTGTGTTTGTAGATAAGTTGATTTGTCTGTTCACTACCTATGTAGTAAGAGTTCTTGATTATTCAAAGTGTATGTGTAGATTAGTACAAAAAGTTTGGCCATGCACTGACCTATGTACACTAGTTTTTGCTATAAAATAAATCTATATGTATCTGTAGCCCTTGCTTACTATCAAGTTATTCTCTTGCCACAATTTTTTTCCCTTTCTGAATATAGCAAGACTTAACTTTAGTATGAGAAACAGATGTACACGTTGATTCTTTTGACATATTAGCAGGGGATATGCTAATCTGCTAGCAGCAGATCAGATCGTAAGGGGAAAACTAGAATACGGCAAGAATCAAACTTAGCTAGTCAACACCATTAATTTTCTAATCAACATGGAGGTACACGGAACTTCCGGAGCACATCAATCCAAAACCATTCAATATCAAAAGTACATACCGTTCTTGCAGATCTGACAATTCAATGGCACTATGATCCAATCCTTGCTTCATTTGGGCCATGGGAAAAGCAGAAGCAGCGGCGTCGTACGCGTAGAGCAAAGGGAGCGGCGGCTGCGGTGGCGCCGAACCTTGCCAGGCACCACTGCCTAAGGATCCCGGCAACATCATGCCAGATGCGAAGGATCCCGGCGAGGCTTGCGACGGAGATGGCGGCGGCGGTGGCGCAACCTCTCGTTTCGAGCGACCCATTGTTTCAGCAGATTGAGTTGAGGGATTACTAACTGGATGGGGTATTTCAGTAGGAATTTGACGCTTCGACTAACTAATTTGGCGTGTAAAGTGCGATTTTTTTCCCGCGGATGGGGATTTACCGCCAAATATACAGAGAAGGGATGAGCCATGGAGCATGGGATGCAAAAGGCCAAGAAAGC
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| CDS seq | ATGGGTCGCTCGAAACGAGAGGTTGCGCCACCGCCGCCGCCATCTCCGTCGCAAGCCTCGCCGGGATCCTTCGCATCTGGCATGATGTTGCCGGGATCCTTAGGCAGTGGTGCCTGGCAAGGTTCGGCGCCACCGCAGCCGCCGCTCCCTTTGCTCTACGCGTACGACGCCGCTGCTTCTGCTTTTCCCATGGCCCAAATGAAGCAAGGATTGGATCATAGTGCCATTGAATTGTCAGATCTGCAAGAACGTGGTATGGACTTTCATCCGCCTGGTGGTTTCTTAAGTTACTTTTAG |
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| Protein seq | MGRSKREVAPPPPPSPSQASPGSFASGMMLPGSLGSGAWQGSAPPQPPLPLLYAYDAAASAFPMAQMKQGLDHSAIELSDLQERGMDFHPPGGFLSYF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0785600 | OsNip_02t0785600-00 | Chr02 | 33349102 | 33353623 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGTCGCTCGAAACGAGAGGTTGCGCCACCGCCGCCGCCATCTCCGTCGCAAGCCTCGCCGGGATCCTTCGCATCTGGCATGATGTTGCCGGGATCCTTAGGCAGTGGTGCCTGGCAAGGTTCGGCGCCACCGCAGCCGCCGCTCCCTTTGCTCTACGCGTACGACGCCGCTGCTTCTGCTTTTCCCATGGCCCAAATGAAGCAAGGATTGGATCATAGTGCCATTGAATTGTCAGATCTGCAAGAACGTGGTATGGACTTTCATCCGCCTGGTGGTTTCTTAAGTTACTTTTAG
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| Protein seq | MGRSKREVAPPPPPSPSQASPGSFASGMMLPGSLGSGAWQGSAPPQPPLPLLYAYDAAASAFPMAQMKQGLDHSAIELSDLQERGMDFHPPGGFLSYF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g54440 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0785600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0036240 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0036330 | SBH | 0.000000 | 0.000000 | 0.135277 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0036180 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0035770 | SBH | 0.0 | 0.140881 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0035960 | SBH | 0.0 | 8.394888 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0035780 | SBH | 0.0 | 0.248486 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0576300 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0035860 | SBH | 0.0 | 2.769232 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0036100 | SBH | 0.0 | 1.381064 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0036060 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0035660 | SBH | 0.0 | 0.741018 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G036310 | SBH | 0.0 | 1.419886 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0036050 | SBH | 0.0 | 0.864619 | 0.0 |
