Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0780550 | OGI:02093310 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:33067716-33071743 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTGCTCTCTTCCATTCCTTCCAAGGAATCCTCCCCACCATCTTCATCTCCACTCCCTCTCCTCTCTACTCCTCTACGCGGTCGAGCAATCAACCCGCCGCCGCCGCCGGAGGGGCCGCTCTCCGTCGAGGGCTCGCCATCTTATATATGGGCCGGCCGCCTCCGGCTGCGCTCCAGCTGATCGGCCGCCGGAAAGGTGCGGCGGGGTTTCGTTTCGCTCCCATTTGGATCATGCCACGCGGGCTCAGGGGCTCCTCCTCGTGTTCCTCCTAGATCTGGCTTGGAATCCATGGCGGTGCCCCGTTCGGCTGGGCTGGGTGCGGTGGGTGGGTGGTTGTGCGTCGTTCCCGTGCGGAAGGCCTCCTTTCTGTTTCCGCTTTAGAGCTGTGGGCATGAATAACTGTGCACTCTTTGCCTTTGTGCACACCTACCTTGACAAAATTCCTTTATGTTTTCCATCCACTTGCGAATTTGCGAAGAATTATATGCTTCTGTTAAAAACAATACTACTAGACTGAATTGGAGTACATTCTTGGGCGAAGTTTTCTAGGGGTGGTGTGAGAGTGGATGCTTTGGTTGTTTCACTTGCTACCGTGGTGGTAACGCTAACTAAATTCGTGGCTTTTGGGAGAGACGTTGTTTGGTTTATGAGCTGTGAGAATGGGGAAGCAGGCTGCTTGCTACATTTATGGTTGCAACTTTTTTTAGTAGTAGCATTTTTAGAATGGGAAAATCTCTGACCGTTTAAGGTTAGTTATATTAGCGAAAGTGGATTGCTTGTAGCTTTGTAATTTCTGGACATTGTCTACCTGTATTCTTGTTATCTAGTTGTGATGACCTATTTTTGTCTTCTTTCCTTTTTATTCTTCCCATGCTGCCAAATAGTCTATATCACTGTGTAGTGCATATTCTTGGTTCGCTGTTGGAATGTTTTTTCTTCAGTTAAATTTTAGTATTCCTAGAATAGGAAATGGCTGTTGCCAATTGCCACTATGTTCCAGCATTTACTTACTGCTGGAACTGTTTTCCATGGCTTGGATAAATTATCATCTGGATATATTACCTTGTACTGGTGACATTGCACAGAATCTGCAAGAAGATGAGTTCACATGGATTTTCTACAAAAGGCGGAGATGCAGGGTCAAAATTACCAAGTACAGTTACCACCCTAAATCCAAATGCAGCAGAATTTGTCCCTTCAACTTTTAGGTCGCCTTTTGGAAGTAGAACAGTTGCGGATGTAAGTAAACCAGATTTTAGGGGGCTCTCTGGTAAAACGAACCTTGGTAGGTCGGAATCATCAAAATCTAATAACTCGGATGATGAAACACACCAGTTTTGGCATAGACAGCTTCCTGATGATATTATTCCAGACTTCAGTGATATGGAAAAAGTTGAACAGCAACATGGAGAATTGTCATTTTCTGGATTGTCATTGAATGCACCCCCTTTCTTTGGCACAGCAGCCAGCAACTTGTCGAGAGAGCATCATGGGTTATTGTCTCAAGCAGGCAAGAATCTTGACCTGGGGCACAATGATTTGTATTATGATGAGAATTCAGGTTCAAACAGTGGGAAGCAAAATCATGCAGATAACCTATGTTATACTAATGGGAAGCTTGACCTCCTTTATGATCATGACCCACTTGAGTATTTAGCATCCCAGTTTCCTGGTTTTTCTGTGGAGAGCCTTGCTGAGTTGTACTGTGCTAATGGTTGCGACTTCGACCTTACTGTTGAAATTCTCACTCAGTTAGAGGTGATCTCCTAATCTAGTCCTTATAATTAAATATTAATATAAGGAAAATAAATCTGTAAAATATTCTTGTCTTGATAGCCAGTTGTGCACCCATCATTCGCAACATTGTGGTGTCCCGTATTAATTGCTTTGCTGGGATGCAGAGTTGGGTATTATAATGTAGTGTTCTATTACTTTGCTTTGACTGGTGCTAACAACTTGGACATCTTCACTAAGTGAGAATAATGACCAAAACTAGTATAATGTTCACTCAACTTCCGTTTGCTCATCTATTAGCTGCTGCATTAGGCTGTCAGTACAAAGCACAAACTGTATGTATGAATAATTCGTGCTATACTGCTATGCATTAGTATTAGAGCTTTGTGTTGCTATCTTATTGTTTTAGCCTCTTTTGACCTGTAGGCAGATCGTTTTGTTTTAAAGTTATTCTTTTTTCAAGTAAAAATTTTAAAACTTCTGCTTGGTACTTATAGATGGGACATTACATTTTCTGTGTAACAGTACAAAGTTGACCCTTAAAGCTAGAGCATATCTATATTTAACTGTACATATTTTTTGTCTTACATTTTTTAAAACCTTTTAGTGCATGTTGTGTTCTGGAGATTTTGTGGCATATATATGTAGGCTGGGATTTTCCCATTCTCTTAAAAAAAATGCAGTACTTGCACGCAAATCCGACCTTTTCTTTTGATTGCAGATGCAAGTTGATGCTAGCTCCTGTCAGAATCTGAATCTGGCCCCAAATACACCAAACATTGGCACAGGAAACTTCCCTGTACTACCTGGAACAGAAGACCTTAATTGTTTGTTTGAAGGCAATGTAGGTGCCCATGGAATTACAAACAGACACAACTCTTCAACAATGTCTAGGACTGGAGATTTTGTTTCAGCTATTCAAAGACTTGCATTGCAGGATGCTGGCCACATGAAGTTTAAAAATGAAAGTCCCAAGTATGCTAATGGTCTTTTGAGTATTGTTGCGCGGAAACAGTATGGCTGTGATACAAGGTCTTCCTTAGGAAACAAGTTCCTTAAGGCCAGTAGTAATGTTCACTCAGCCCCAGTCAGTCTAAAGACTGGTGATGCCATGGGTAATATTCTCATCCAGACATTTTGATTTCCGACCATGCTCCAGTTATGGATTGATAGCCTGCATTTATGCTACTGTCCAGCAAGCATGTGCTCAGAATCAAGGGGGGAAGCTGGTGATTTTGCCCGCATACGCAATACATGTTTTGAACAAGTAAGCACTCTTAAATTGCATGTTCATCTTGCACAATGTATTCATGGCATCATTTTGTTTACTTGCTTTGAGTTTTCTTGTGTTGACTACCTCCATTTATTGATCACTGTCCTTTGATCTAGTGGAATGTTTATTTTGGATGATTGGAATATTTTCTGGCAGGCCACGCAAGCTTATATGATGGGAAACAAAGCGTTAGCAAAGGAACTGAGCATGAAGGGACAGTTGTACAACCTGCAAATGAAGGCAGCTCATGAGACAGCTAGGGAAGCTATTTATCAGCAAAGGTGGATTAACTCCCTGATAACCAATTGACATGACCTTAACCTTTCATAAATAAAAGTATTTTTCAACCTGCCAACTTACTGACCACTAACAAAATACCAGGACCTGGACTGCACATTGTATTCATCTTTTCTCCTCTTGCATACAAGTATCTTTTCGCACTCTAAAGGCGCATCTAGTTTTTTTTAGCTTCCCCTGCTTCGTTGCAGGAACCCATTTTCATCTGAACAAGGCCAGGACCGTCTGATCGACTTGCATGGGCTTCAGGTGAGCGAAGCCATCCAGGTTGTGAAGGCTGAGCTTGCCCTCCTGATGGGTGCTACAAGGTCAGCTGGAGAAGGCACAGATCATGATCTGCATTGGAACAGGACACCACACCAAGGGCTCTCGCGAGGCAAGGTTGCCGGACGCCCTTGAACATTTCCTCCTGGATGAAGGCCTCCATCACACGCAGCCATAGCCTGGTCTGCTCCATGTTAACCTGTGCTAACATCGTCTTCTAGGTAAACAATCTGGGAGAAGAAAAGGAGGTTAGGGGGAAAAAAGAAGGTGAGCCCTAACCTGACAATGTAAAATATATCTATCTATACCTGTATGCACAATGCACGTATACTAATTAGCTACTCCAAGGGCCAGAGAAGAACGGCACGAAACATCATGTATGTTGTATTGTTTCTCGTTGTACATGTCGTATGTACATATCAGGTATAACTTGTTTTTAGTTAATTAACGTGGAGACTT
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| CDS seq | ATGAGTTCACATGGATTTTCTACAAAAGGCGGAGATGCAGGGTCAAAATTACCAAGTACAGTTACCACCCTAAATCCAAATGCAGCAGAATTTGTCCCTTCAACTTTTAGGTCGCCTTTTGGAAGTAGAACAGTTGCGGATGTAAGTAAACCAGATTTTAGGGGGCTCTCTGGTAAAACGAACCTTGGTAGGTCGGAATCATCAAAATCTAATAACTCGGATGATGAAACACACCAGTTTTGGCATAGACAGCTTCCTGATGATATTATTCCAGACTTCAGTGATATGGAAAAAGTTGAACAGCAACATGGAGAATTGTCATTTTCTGGATTGTCATTGAATGCACCCCCTTTCTTTGGCACAGCAGCCAGCAACTTGTCGAGAGAGCATCATGGGTTATTGTCTCAAGCAGGCAAGAATCTTGACCTGGGGCACAATGATTTGTATTATGATGAGAATTCAGGTTCAAACAGTGGGAAGCAAAATCATGCAGATAACCTATGTTATACTAATGGGAAGCTTGACCTCCTTTATGATCATGACCCACTTGAGTATTTAGCATCCCAGTTTCCTGGTTTTTCTGTGGAGAGCCTTGCTGAGTTGTACTGTGCTAATGGTTGCGACTTCGACCTTACTGTTGAAATTCTCACTCAGTTAGAGATGCAAGTTGATGCTAGCTCCTGTCAGAATCTGAATCTGGCCCCAAATACACCAAACATTGGCACAGGAAACTTCCCTGTACTACCTGGAACAGAAGACCTTAATTGTTTGTTTGAAGGCAATGTAGGTGCCCATGGAATTACAAACAGACACAACTCTTCAACAATGTCTAGGACTGGAGATTTTGTTTCAGCTATTCAAAGACTTGCATTGCAGGATGCTGGCCACATGAAGTTTAAAAATGAAAGTCCCAAGTATGCTAATGGTCTTTTGAGTATTGTTGCGCGGAAACAGTATGGCTGTGATACAAGGTCTTCCTTAGGAAACAAGTTCCTTAAGGCCAGTAGTAATGTTCACTCAGCCCCAGTCAGTCTAAAGACTGGTGATGCCATGGCAAGCATGTGCTCAGAATCAAGGGGGGAAGCTGGTGATTTTGCCCGCATACGCAATACATGTTTTGAACAAGCCACGCAAGCTTATATGATGGGAAACAAAGCGTTAGCAAAGGAACTGAGCATGAAGGGACAGTTGTACAACCTGCAAATGAAGGCAGCTCATGAGACAGCTAGGGAAGCTATTTATCAGCAAAGGAACCCATTTTCATCTGAACAAGGCCAGGACCGTCTGATCGACTTGCATGGGCTTCAGGTGAGCGAAGCCATCCAGGTTGTGAAGGCTGAGCTTGCCCTCCTGATGGGTGCTACAAGGTCAGCTGGAGAAGGCACAGATCATGATCTGCATTGGAACAGGACACCACACCAAGGGCTCTCGCGAGGCAAGGTTGCCGGACGCCCTTGA
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| Protein seq | MSSHGFSTKGGDAGSKLPSTVTTLNPNAAEFVPSTFRSPFGSRTVADVSKPDFRGLSGKTNLGRSESSKSNNSDDETHQFWHRQLPDDIIPDFSDMEKVEQQHGELSFSGLSLNAPPFFGTAASNLSREHHGLLSQAGKNLDLGHNDLYYDENSGSNSGKQNHADNLCYTNGKLDLLYDHDPLEYLASQFPGFSVESLAELYCANGCDFDLTVEILTQLEMQVDASSCQNLNLAPNTPNIGTGNFPVLPGTEDLNCLFEGNVGAHGITNRHNSSTMSRTGDFVSAIQRLALQDAGHMKFKNESPKYANGLLSIVARKQYGCDTRSSLGNKFLKASSNVHSAPVSLKTGDAMASMCSESRGEAGDFARIRNTCFEQATQAYMMGNKALAKELSMKGQLYNLQMKAAHETAREAIYQQRNPFSSEQGQDRLIDLHGLQVSEAIQVVKAELALLMGATRSAGEGTDHDLHWNRTPHQGLSRGKVAGRP |
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| Function | Polyadenylate-binding protein-interacting protein 7 [UniProtKB/Swiss-Prot:O64843] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0780550 | OsNip_02t0780550-01 | Chr02 | 33067716 | 33071743 | + | RAP2018-11-26 | ||
| CDS seq | ATGAGTTCACATGGATTTTCTACAAAAGGCGGAGATGCAGGGTCAAAATTACCAAGTACAGTTACCACCCTAAATCCAAATGCAGCAGAATTTGTCCCTTCAACTTTTAGGTCGCCTTTTGGAAGTAGAACAGTTGCGGATGTAAGTAAACCAGATTTTAGGGGGCTCTCTGGTAAAACGAACCTTGGTAGGTCGGAATCATCAAAATCTAATAACTCGGATGATGAAACACACCAGTTTTGGCATAGACAGCTTCCTGATGATATTATTCCAGACTTCAGTGATATGGAAAAAGTTGAACAGCAACATGGAGAATTGTCATTTTCTGGATTGTCATTGAATGCACCCCCTTTCTTTGGCACAGCAGCCAGCAACTTGTCGAGAGAGCATCATGGGTTATTGTCTCAAGCAGGCAAGAATCTTGACCTGGGGCACAATGATTTGTATTATGATGAGAATTCAGGTTCAAACAGTGGGAAGCAAAATCATGCAGATAACCTATGTTATACTAATGGGAAGCTTGACCTCCTTTATGATCATGACCCACTTGAGTATTTAGCATCCCAGTTTCCTGGTTTTTCTGTGGAGAGCCTTGCTGAGTTGTACTGTGCTAATGGTTGCGACTTCGACCTTACTGTTGAAATTCTCACTCAGTTAGAGATGCAAGTTGATGCTAGCTCCTGTCAGAATCTGAATCTGGCCCCAAATACACCAAACATTGGCACAGGAAACTTCCCTGTACTACCTGGAACAGAAGACCTTAATTGTTTGTTTGAAGGCAATGTAGGTGCCCATGGAATTACAAACAGACACAACTCTTCAACAATGTCTAGGACTGGAGATTTTGTTTCAGCTATTCAAAGACTTGCATTGCAGGATGCTGGCCACATGAAGTTTAAAAATGAAAGTCCCAAGTATGCTAATGGTCTTTTGAGTATTGTTGCGCGGAAACAGTATGGCTGTGATACAAGGTCTTCCTTAGGAAACAAGTTCCTTAAGGCCAGTAGTAATGTTCACTCAGCCCCAGTCAGTCTAAAGACTGGTGATGCCATGGCAAGCATGTGCTCAGAATCAAGGGGGGAAGCTGGTGATTTTGCCCGCATACGCAATACATGTTTTGAACAAGCCACGCAAGCTTATATGATGGGAAACAAAGCGTTAGCAAAGGAACTGAGCATGAAGGGACAGTTGTACAACCTGCAAATGAAGGCAGCTCATGAGACAGCTAGGGAAGCTATTTATCAGCAAAGGAACCCATTTTCATCTGAACAAGGCCAGGACCGTCTGATCGACTTGCATGGGCTTCAGGTGAGCGAAGCCATCCAGGTTGTGAAGGCTGAGCTTGCCCTCCTGATGGGTGCTACAAGGTCAGCTGGAGAAGGCACAGATCATGATCTGCATTGGAACAGGACACCACACCAAGGGCTCTCGCGAGGCAAGGTTGCCGGACGCCCTTGA
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| Protein seq | MSSHGFSTKGGDAGSKLPSTVTTLNPNAAEFVPSTFRSPFGSRTVADVSKPDFRGLSGKTNLGRSESSKSNNSDDETHQFWHRQLPDDIIPDFSDMEKVEQQHGELSFSGLSLNAPPFFGTAASNLSREHHGLLSQAGKNLDLGHNDLYYDENSGSNSGKQNHADNLCYTNGKLDLLYDHDPLEYLASQFPGFSVESLAELYCANGCDFDLTVEILTQLEMQVDASSCQNLNLAPNTPNIGTGNFPVLPGTEDLNCLFEGNVGAHGITNRHNSSTMSRTGDFVSAIQRLALQDAGHMKFKNESPKYANGLLSIVARKQYGCDTRSSLGNKFLKASSNVHSAPVSLKTGDAMASMCSESRGEAGDFARIRNTCFEQATQAYMMGNKALAKELSMKGQLYNLQMKAAHETAREAIYQQRNPFSSEQGQDRLIDLHGLQVSEAIQVVKAELALLMGATRSAGEGTDHDLHWNRTPHQGLSRGKVAGRP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.150602 | 1.929972 | 3.732005 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0199200 | RBH | 7.938113 | 10.778780 | 14.644678 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g53994 | RBH | 1.246681 | 0.768942 | 1.570601 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0780550 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0035910 | RBH | 1.840203 | 12.092791 | 14.290293 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0036010 | RBH | 0.416963 | 2.398284 | 3.389776 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0035870 | RBH | 1.529448 | 3.360803 | 16.452217 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0035440 | RBH | 0.456899 | 0.276328 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0035570 | RBH | 8.199718 | 5.407457 | 26.623566 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0540500 | RBH | 8.4504445 | 21.7487525 | 36.5587845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0035400 | RBH | 0.499765 | 0.705496 | 1.832210 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0571000 | RBH | 6.958681 | 20.256052 | 22.261286 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0035640 | RBH | 0.283634 | 0.477558 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0035470 | RBH | 1.067563 | 2.026066 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0035740 | RBH | 8.327687 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0035690 | RBH | 0.989536 | 1.302831 | 2.039355 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0035270 | RBH | 0.369917 | 7.013033 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G035950 | RBH | 0.648349 | 0.613399 | 5.785068 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0035690 | RBH | 0.431064 | 22.652473 | 7.495056 |
