Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0777800 | OGI:02092860 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:32915446-32918514 | ||||||||
| Gene Symbol | RLCK86, OsRLCK86, PTK2, OsPTK2 | ||||||||||
| DNA seq | AGGGAAAAAAAGAACACCATTTTCCTCAAGAAAACAAAAGGCAATATTACATTTTTTGCTCTTGGGATCGAAAATAGCATCACCAAGAAAAAGAATCAACGAACATGTTACTGCACCTCCTGCACTTTGCATCCACCGTAGAAATATGTTACCACTATTATGTACACTTGAAACGATCTCGAACAATACACGCTCACACGCGCGCACACACGCAGTAACAGGCAAATTCACGCCCTGCCGCGGTCGCACTTTGCATCCACCGTTGAAATCTTGAGCTAGCCGCCCCTGTCCCTGCTCTGCCTCGGCGAGCCGGACACGGAGCTCGCGTACCGGTGCTCCCCCTTCCGCATCGCGCCCTCCGCGTGCACCGCCGACGCCACGTACCTCCTCTTCGCCTTGGCCGCCGCCGCCACCTCCTCCTCGCCGTCCTCACCCGCGGCCGCGGCCGCCTTCTTCCCGTCGTCCTTGGCAGCAACAACAACGGCGGCAGCGGACGGGACGGTGTAGACGAAGGGCCCGGCGAGCACGTCGCCGCAGGACGTCTGCAGCAGCGGCTCGAGCGCGGCGACGACGTCGCGCATGTGCGGGCGGGACTTGGGCACGCTGTGGAGGCAGTGGTACGCCACCATGGCGGCCTTCCCCGCCGCCTTGTCCGAGTAGCCGCCCTCCAGGCTGGGGTCCATCACCCGGTGCAGCCGCTCCGGCCGCCGGAGGTACGGCCGCGCCCAGTCCACGAGGTTCTGCTCCCGCCCGCGCCGCCGCTTGTCCACGCTCCGCCGCCCCGTCAGCAGCTCCAGCAGCACCACCCCGAAGCTGTACACGTCGCTCTTCGCCGTCAGGTGCCCCGTCAGGATGTACTCCGGCGCCGCGTACCCGTGGGTCCCCATGACGCGGGTCGTGACGTGTGTCGCGTCCCCCTGCGGGCCCTCCTTGGCCAGCCCGAAGTCCGAGAGCTTCGCCGTGTAATCCTGCATCGCCCAACATAATATAAATCTCTCCGTCAGCCACAACATCATAATTAACTATAGCTAAGAGCAAGTTTAATAGTATAGCCAACTACTAACTTTAAATCATTTATAACTAATCTAATAGTCTATTCATACAATAGTTAACTATAAAAATATACTCACAATTAATAACCGGTCCCACCTCTCATACACACATAATATTTTGGAGTATGTGTTGCAGCTGTTTTTCTCTCTCTTCTCTTTTCTTCTCGATATGTGATTATAGCTGGCTTATAGCATGCGTAACTGCTCTAATGTAGCATTGTTGATTTGAACTTTTGTTTGTATATGGTGTCAGCTTAGTCTATGTTTCTGTGTAACATAAACTGTACCAGACTCGATAATGTTCACGTGTGATTTTGCTACTACAAGACGATTTCGTGTCAAAATTCGATGCTACCTGCCATGGGCCGGCATGTGTGTTTTACTCGTAGAATGTTCTCTTTACTGTTTAGGTGGGTAATTAACTAGTCAAAGAGAGTGGTTAGCTTTGCAATTAATTGCTCGGACAAACGCTTGACCTGTACAATTTTACTGTTCTAGAGGCTTTGTAGCCACAGTGCTCATGAACAGCCTTTGCAACAACCAATTGTGTAATCTGGCCGGCGATCGATCGACACCAAACCGTACGTTTCCCTAATTTACATATCTGCTTAGAATAACACGGACGTTTTTGTCCGATTAGGTAGGAGGCATAAATAAACAACCAACCCGGAGGAGAGTAGTCCTACATAATTTGTTCATTTCTTTAAGTTTTGGATGCACTAGTACTTAATTAATTCTCCATTTCTTAAGTTGGCCGCCACAACTAATAAAGTTTGCCACAAAGAATCGACAGAGATTGGCCAAAAACTATAGTTCAAATCGTGTACTCTCTACTCTATATACGTGCGTGCTGCCCCTGCAGCTAAGGTATAGCTTATGGCCTTATTAGATTCAGAAAATTCAGAATTGACTAGTGGCGATCTGGCGATTAGGCGAACGGGTCGTAGTCACCAACGCAGATTAAGAAATCTTAATTATTGGAGCCGATCGTACGTACGTGTGCAAGATAGACCTGGTAAAACTAATTAAGCATAATTAATAATCAGAGGAGTACTCACCGAGTCGAGCAGGATGTTGGATGCCTTGAAGTCTCGGTAGATCACCGGAGTGTCGGCGTCGTGCAGGAACGCGAGCCCCTTGGCCGCGCCCACCGCGATCTTCAGCCGCGTCGCCCACGGCAAGCTCGACAGCAAATCTGCAAGATTAATCAATTAACCGCGCTCAGTTAATGATAGCAATTACTGGTTAATAATGATAGTGCAATTGATTAGTGAGGGTGATTAAGCTTACTCTTGAAGAGGTGGTGCTCGAGGCTGCCCCTGGCCATGTACTCGTAGACGAGCATCCGGTGGTCGTCTTGGCAGCAGTAGCCGATGAGCTTCACCAGATGCGGATGGCTCAACATCCCCAGGTACACCACCTCCGCCTGTGCGTGACAAAACCACGCAATTAATTAGCTACGAACTCGACTAATTATCGTCAAAGAGTACCACGGAATTACTCTGTACGTACCAGCCATTCGCGGTGGCCCTGGTCGCCTTCGCCGTCGAGGTACTTGACGGCGACGTGCTGGGGTTGGAGGAGGCCGGGGCGGAGCTTGGCGTCGATGAAGCCCTTGTAGACGGGGCCGAATCCGCCCTCGCCGATGAAGTTGCTGCCGGAGAAGCTGCGCGTGGCGGCCTTGAGCTCCGCCAGCGTGAAGGCCTGCAGCCCGGACTGCGCCAGCGTCCGCGACAGGTCCTCCAGCGACAGCGACCGGAGCCGCCCCGTCGCGCTCCGCATCCGCCTCACCGCCTTCTTGTTCTTCACCACCGCCGCCGCCGACGCCTTCTTCTCCTCGTCACCTCCCGTCTCGTCGCCACCGCCGCCGAAGAAGCAACGCAACATCCTCCTCATCTCTGGCACCGCGCCGCCGCGCGCGAGTGCAACAACAACGACAACAACAACGACGAGAGAAGAAGTCTTTTCGCGGGAGAGAGTGCGGGTGAGGTGAGGAGGGAGGACTTGGTGGTGGAAT
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| CDS seq | ATGAGGAGGATGTTGCGTTGCTTCTTCGGCGGCGGTGGCGACGAGACGGGAGGTGACGAGGAGAAGAAGGCGTCGGCGGCGGCGGTGGTGAAGAACAAGAAGGCGGTGAGGCGGATGCGGAGCGCGACGGGGCGGCTCCGGTCGCTGTCGCTGGAGGACCTGTCGCGGACGCTGGCGCAGTCCGGGCTGCAGGCCTTCACGCTGGCGGAGCTCAAGGCCGCCACGCGCAGCTTCTCCGGCAGCAACTTCATCGGCGAGGGCGGATTCGGCCCCGTCTACAAGGGCTTCATCGACGCCAAGCTCCGCCCCGGCCTCCTCCAACCCCAGCACGTCGCCGTCAAGTACCTCGACGGCGAAGGCGACCAGGGCCACCGCGAATGGCTGGCGGAGGTGGTGTACCTGGGGATGTTGAGCCATCCGCATCTGGTGAAGCTCATCGGCTACTGCTGCCAAGACGACCACCGGATGCTCGTCTACGAGTACATGGCCAGGGGCAGCCTCGAGCACCACCTCTTCAAGAGTAAGCTTAATCACCCTCACTAA
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| Protein seq | MRRMLRCFFGGGGDETGGDEEKKASAAAVVKNKKAVRRMRSATGRLRSLSLEDLSRTLAQSGLQAFTLAELKAATRSFSGSNFIGEGGFGPVYKGFIDAKLRPGLLQPQHVAVKYLDGEGDQGHREWLAEVVYLGMLSHPHLVKLIGYCCQDDHRMLVYEYMARGSLEHHLFKSKLNHPH |
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| Function | Serine/threonine-protein kinase RIPK [UniProtKB/Swiss-Prot:Q9ZUF4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0777800 | OsNip_02t0777800-01 | Chr02 | 32915472 | 32918514 | - | RAP2018-11-26 | ||
| CDS seq | ATGAGGAGGATGTTGCGTTGCTTCTTCGGCGGCGGTGGCGACGAGACGGGAGGTGACGAGGAGAAGAAGGCGTCGGCGGCGGCGGTGGTGAAGAACAAGAAGGCGGTGAGGCGGATGCGGAGCGCGACGGGGCGGCTCCGGTCGCTGTCGCTGGAGGACCTGTCGCGGACGCTGGCGCAGTCCGGGCTGCAGGCCTTCACGCTGGCGGAGCTCAAGGCCGCCACGCGCAGCTTCTCCGGCAGCAACTTCATCGGCGAGGGCGGATTCGGCCCCGTCTACAAGGGCTTCATCGACGCCAAGCTCCGCCCCGGCCTCCTCCAACCCCAGCACGTCGCCGTCAAGTACCTCGACGGCGAAGGCGACCAGGGCCACCGCGAATGGCTGGCGGAGGTGGTGTACCTGGGGATGTTGAGCCATCCGCATCTGGTGAAGCTCATCGGCTACTGCTGCCAAGACGACCACCGGATGCTCGTCTACGAGTACATGGCCAGGGGCAGCCTCGAGCACCACCTCTTCAAGAGTAAGCTTAATCACCCTCACTAA
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| Protein seq | MRRMLRCFFGGGGDETGGDEEKKASAAAVVKNKKAVRRMRSATGRLRSLSLEDLSRTLAQSGLQAFTLAELKAATRSFSGSNFIGEGGFGPVYKGFIDAKLRPGLLQPQHVAVKYLDGEGDQGHREWLAEVVYLGMLSHPHLVKLIGYCCQDDHRMLVYEYMARGSLEHHLFKSKLNHPH |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0777800 | OsNip_02t0777800-02 | Chr02 | 32915446 | 32916371 | - | IsoSeq | ||
| CDS seq | GCCCGCAGGGGGACGCGACACACGTCACGACCCGCGTCATGGGGACCCACGGGTACGCGGCGCCGGAGTACA |
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| Protein seq | ARRGTRHTSRPASWGPTGTRRRST |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.837765 | 2.151549 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g53750 | RBH | 0.000000 | 0.276135 | 0.611644 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0777800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0035690 | RBH | 0.0 | 11.585838 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0035790 | RBH | 0.0 | 0.598446 | 0.990005 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0035670 | RBH | 0.192322 | 8.271960 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0035230 | RBH | 0.0 | 0.202998 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0035350 | RBH | 0.573281 | 2.903951 | 2.553021 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0538200 | RBH | 4.0194745 | 85.391426 | 0.6258735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0035190 | RBH | 0.098227 | 0.756174 | 0.371995 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0568700 | RBH | 5.088539 | 130.6862985 | 0.0796 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0035440 | RBH | 0.000000 | 0.102390 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0035270 | RBH | 0.100220 | 1.659910 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0035520 | RBH | 1.294357 | 22.328890 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0035480 | RBH | 0.303833 | 0.655844 | 0.618622 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0035060 | RBH | 0.162179 | 5.619560 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G035730 | RBH | 0.0 | 0.000000 | 0.564052 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0035440 | RBH | 0.456537 | 11.723074 | 2.162172 |
