Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0726700 | OGI:02085450 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:30232944-30235725 | ||||||||
| Gene Symbol | OsbHLH034 | ||||||||||
| DNA seq | GAATTGGGAATTTTTAGAGATAGCAATACATATACTCGCTATAGAATATGGAATTCTGGACTACATTTACAGATGATGAATGAGAAATTGGGGAGTGTCCTCAAGACCTCCCCTGAAGGAGCTTCAATGGTATATGAATGGATGCTTAGGTTAGTTAATTGTTGTTGCAATATAAATAAAATAATTGCATCAATTGGGGATTGTGGTTGCTGCTACCAAGTTATTGTCTGAACTTGATGATGTCTGAATTTTCTAGTTTGGAGAAAAAGTTCTAGCTTTTATTGCACCGCCTCTTGGTTATTTGGATGGGCTCTTCATCTTCATTGATCTGTGATGTGAAGTCAGGACAAAGGTACAAAATAATTATTAAGCAGACGATCTATATGTTCAAACATCATGAATAAATCAACTTTGTAAAGCTCTATACCTTTGAGTTGTCACTAGTATTATCTCTTGCTCGTTTGGCCAGGTTGATCTCTACAGCTATATTAGCTTGAGATGGATCTAGTCCTGACTTTTTAAGAGCTTCTGTCAATCTGTTGAATAATCTGTTGCAAATTGAAGTAGTATCCTGTTAGTTACATATTGTGCTAACTTTAGTCTTGAAGTAACAAATGGTTAAGGAACAGACCCTTGAGAGTAAGCGCTAGAAATACTATGGTTTTCATCGTGAAGGGTCTGTTTCTCATGCTTGTTCGGCATTTTGTTGCCTGGTTCAGACTCTTGGCGCATTGTTGACATGCTCAGCCATGGTGGCTGATTGCTGGGTGTGCTGTTCTCTGCGTTTAAAAGACATTAAAGTTAGTGGATCTAGTTCTTAATTACAAGAATTCTGACTGTTGAAAGGTGATAAGAAATGGACTTACTTTCCAAATTTTGTGGTGTGCCTGTTGCCATGTGGGAGGAACTGGTGGTTGTACTGGTTACACTCTGTGTGTTGAAGAGAGCAGGTTGTGCTGCCGATATGTGCTTGGGACCGTACTGTTCGTTGTTCATGTCCTGTGTGGATGGTGACAAATCTTCCCCCTGGACTTGACTGGTGTTCTGTGAGACCATGAACAAGAAACAAGGATGGGTACATATCATTGGTATATGATTATGATGAATTGTGCATTCGCTTTCAGTTGCTGTTTTTATTTTACGGAATTACCTTTGTGTTTCTCCAGCATGATCTATAGTAGACTTTTGCCTACCAAGAAAAAAAAATAGAGGGTGAATACTGTTGCACAATTATGTCATGAACATGCTAACATGGCTATGATAGTACCCATGGCATGGATTTGGAATCCTCGTGATTCCTTTCTGGATCGGCTTCCTCATACTTTTGGACTTTCTCTTGCAAAAACCTTATGTATTCAATAACCTGCAAACAAAATGCTTCACAAGGGAGAAATTGCAATATAGCCTGCTGACTACAGTGCCAAAATTGATATTCTGTTTACCTCCGAAAGGAAAGAAGCTTTGTCTCTCTTCTGATCAGTGTGTGGCAGGAGTTCACGAAGTATTTCAAGCCTGAAGGAGAGCATGAAGAATTGCATTTTAGAACACATTTCTTGCACCATATACTTATATGAAATTGTCTTGGAATTAAATGCTGCTAATATGATATCTTGTTGAGCTATCTAGCTACGTCTTCATGGTTGGTTTGTTCCTGCTCTGCAGAAAATAATTCAAAATGGTGTTTGACCTCTACTAGCTTGCCTGTCATTTATCTTGGTCCTCCTTCTCTGCTCAGTTGCTGAATGCTTTGATCTCGGAGTGCTGGGTCCCTGATCGGCGCTGCTGGCGCTACTTCTTCCCTCTGCTCTTGTTGCTGAGTGCACATGTATATATCAAATCCATCAGTGCCTGAATTGAAGTGACAGACTAGAGAATCAACAATACAACTGCGGTACTAACCTTCATATGGTGTCTGGCCTATGGATCTTTGATCAATGGCAGAATCTTGCCACATCGTCGACGGCGCACGGTGAGCCCTACTCCCAGATCTTCCTCCTGTTTCATGTGCATTCTCCATCCTGGCGCCATGAAGCGCAGGTGCAAATGCGAACGCACTCCTCCTGACGCCGCCATGGCTACCGGCCTCTTCTCTCGACGGAGTACCGGACGCGTGCCTGATGCTGAACGTCCCGACGCCGCCCGGTAGCACGTGCTCCTCCGAGTCCGAACCTGCCGGCGACGCGCCGTCGACGGCACTCCCCGCCGCCGTGCCATTGCCGCTGCTGCGGCCGCGCTGCTTGGCCAGGTCCAGTGGCCTCAGTGATCTGCGGATCTCCATACCGTATCCTGCACTTGACATGGGTAACATGGGTTAGCAAGTTGGTGCATTGCTGTCTAACTTGCACACCATGGCACTTGCAGTTGAGAAGGCAAAGGAGAGGGCGGTGCAGACAGCTCACCTCGCGATGAATGGCTGGAATGCTGCTCCTCCCGGTGCTGGAACGGCGGCGACGACGAGCCGCCGCCGGCGCGGAGCGAGAGGAAGTCATGAGCCGGCTCCTCTCCTGCGAATCACCGACAAGCACAACACAACACACGGCAATGTACCATGAGCTGATGAGCATCATGCGGTGAAGAGAGAAGACGCTGTGGAATTGGAGGAAGGAAGGAAAGGACACTAGGGTGAAGTGTAATTCTCTTTGATACCTTGGAAAAGCTGCATTGGCGCCCGGGACACAGGACACTGGAGATCTGTCGACGCTGCTGCCAAGCCGAGCGGCCTGCCGTTGCAGCAGAAAGATGGCGCCTGGATCTTGCCGCTGGGCAGTACACTGATGGAATG
More
|
||||||||||
| CDS seq | ATGGAGATCCGCAGATCACTGAGGCCACTGGACCTGGCCAAGCAGCGCGGCCGCAGCAGCGGCAATGGCACGGCGGCGGGGAGTGCCGTCGACGGCGCGTCGCCGGCAGGTTCGGACTCGGAGGAGCACGTGCTACCGGGCGGCGTCGGGACGTTCAGCATCAGGCACGCGTCCGGTACTCCGTCGAGAGAAGAGGCCGGTAGCCATGGCGGCGTCAGGAGGAGTGCGTTCGCATTTGCACCTGCGCTTCATGGCGCCAGGATGGAGAATGCACATGAAACAGGAGGAAGATCTGGGAGTAGGGCTCACCGTGCGCCGTCGACGATGTGGCAAGATTCTGCCATTGATCAAAGATCCATAGGCCAGACACCATATGAAGCAACAAGAGCAGAGGGAAGAAGTAGCGCCAGCAGCGCCGATCAGGGACCCAGCACTCCGAGATCAAAGCATTCAGCAACTGAGCAGAGAAGGAGGACCAAGATAAATGACAGGCTTGAAATACTTCGTGAACTCCTGCCACACACTGATCAGAAGAGAGACAAAGCTTCTTTCCTTTCGGAGGTTATTGAATACATAAGGTTTTTGCAAGAGAAAGTCCAAAAGTATGAGGAAGCCGATCCAGAAAGGAATCACGAGGATTCCAAATCCATGCCATGGGCAAAAGTCTACTATAGATCATGCTGGAGAAACACAAAGAACACCAGTCAAGTCCAGGGGGAAGATTTGTCACCATCCACACAGGACATGAACAACGAACAGTACGGTCCCAAGCACATATCGGCAGCACAACCTGCTCTCTTCAACACACAGAGTGTAACCAGTACAACCACCAGTTCCTCCCACATGGCAACAGGCACACCACAAAATTTGGAAAAGAACAGCACACCCAGCAATCAGCCACCATGGCTGAGCATGTCAACAATGCGCCAAGAGTCTGAACCAGGCAACAAAATGCCGAACAAGCATGAGAAACAGACCCTTCACGATGAAAACCATAGTATTTCTAGCGCTTACTCTCAAGGGTCTGTTCCTTAA
More
|
||||||||||
| Protein seq | MEIRRSLRPLDLAKQRGRSSGNGTAAGSAVDGASPAGSDSEEHVLPGGVGTFSIRHASGTPSREEAGSHGGVRRSAFAFAPALHGARMENAHETGGRSGSRAHRAPSTMWQDSAIDQRSIGQTPYEATRAEGRSSASSADQGPSTPRSKHSATEQRRRTKINDRLEILRELLPHTDQKRDKASFLSEVIEYIRFLQEKVQKYEEADPERNHEDSKSMPWAKVYYRSCWRNTKNTSQVQGEDLSPSTQDMNNEQYGPKHISAAQPALFNTQSVTSTTTSSSHMATGTPQNLEKNSTPSNQPPWLSMSTMRQESEPGNKMPNKHEKQTLHDENHSISSAYSQGSVP |
||||||||||
| Function | Transcription factor BIM1 [UniProtKB/Swiss-Prot:Q9LEZ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0726700 | OsNip_02t0726700-01 | Chr02 | 30233286 | 30235221 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGATCCGCAGATCACTGAGGCCACTGGACCTGGCCAAGCAGCGCGGCCGCAGCAGCGGCAATGGCACGGCGGCGGGGAGTGCCGTCGACGGCGCGTCGCCGGCAGGTTCGGACTCGGAGGAGCACGTGCTACCGGGCGGCGTCGGGACGTTCAGCATCAGGCACGCGTCCGGTACTCCGTCGAGAGAAGAGGCCGGTAGCCATGGCGGCGTCAGGAGGAGTGCGTTCGCATTTGCACCTGCGCTTCATGGCGCCAGGATGGAGAATGCACATGAAACAGGAGGAAGATCTGGGAGTAGGGCTCACCGTGCGCCGTCGACGATGTGGCAAGATTCTGCCATTGATCAAAGATCCATAGGCCAGACACCATATGAAGCAACAAGAGCAGAGGGAAGAAGTAGCGCCAGCAGCGCCGATCAGGGACCCAGCACTCCGAGATCAAAGCATTCAGCAACTGAGCAGAGAAGGAGGACCAAGATAAATGACAGGCTTGAAATACTTCGTGAACTCCTGCCACACACTGATCAGAAGAGAGACAAAGCTTCTTTCCTTTCGGAGGTTATTGAATACATAAGGTTTTTGCAAGAGAAAGTCCAAAAGTATGAGGAAGCCGATCCAGAAAGGAATCACGAGGATTCCAAATCCATGCCATGGGCAAAAGTCTACTATAGATCATGCTGGAGAAACACAAAGAACACCAGTCAAGTCCAGGGGGAAGATTTGTCACCATCCACACAGGACATGAACAACGAACAGTACGGTCCCAAGCACATATCGGCAGCACAACCTGCTCTCTTCAACACACAGAGTGTAACCAGTACAACCACCAGTTCCTCCCACATGGCAACAGGCACACCACAAAATTTGGAAAAGAACAGCACACCCAGCAATCAGCCACCATGGCTGAGCATGTCAACAATGCGCCAAGAGTCTGAACCAGGCAACAAAATGCCGAACAAGCATGAGAAACAGACCCTTCACGATGAAAACCATAGTATTTCTAGCGCTTACTCTCAAGGGTCTGTTCCTTAA
More
|
|||||||
| Protein seq | MEIRRSLRPLDLAKQRGRSSGNGTAAGSAVDGASPAGSDSEEHVLPGGVGTFSIRHASGTPSREEAGSHGGVRRSAFAFAPALHGARMENAHETGGRSGSRAHRAPSTMWQDSAIDQRSIGQTPYEATRAEGRSSASSADQGPSTPRSKHSATEQRRRTKINDRLEILRELLPHTDQKRDKASFLSEVIEYIRFLQEKVQKYEEADPERNHEDSKSMPWAKVYYRSCWRNTKNTSQVQGEDLSPSTQDMNNEQYGPKHISAAQPALFNTQSVTSTTTSSSHMATGTPQNLEKNSTPSNQPPWLSMSTMRQESEPGNKMPNKHEKQTLHDENHSISSAYSQGSVP
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0726700 | OsNip_02t0726700-02 | Chr02 | 30232944 | 30235725 | - | IsoSeq | ||
| CDS seq | ATGGCACGGCGGCGGGGAGTGCCGTCGACGGCGCGTCGCCGGCAGGTTCGGACTCGGAGGAGCACGTGCTACCGGGCGGCGTCGGGACGTTCAGCATCAGGCACGCGTCCGGTACTCCGTCGAGAGAAGAGGCCGGTAGCCATGGCGGCGTCAGGAGGAGTGCGTTCGCATTTGCACCTGCGCTTCATGGCGCCAGGATGGAGAATGCACATGAAACAGGAGGAAGATCTGGGAGTAGGGCTCACCGTGCGCCGTCGACGATGTGGCAAGATTCTGCCATTGATCAAAGAT
More
|
|||||||
| Protein seq | MARRRGVPSTARRRQVRTRRSTCYRAASGRSASGTRPVLRREKRPVAMAASGGVRSHLHLRFMAPGWRMHMKQEEDLGVGLTVRRRRCGKILPLIKD |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.132790 | 1.789090 | 4.283500 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0275600 | RBH | 1.225745 | 0.326589 | 1.982949 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g49480 | RBH | 0.498150 | 0.241848 | 0.730664 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0726700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0032080 | RBH | 0.154642 | 1.697372 | 1.201821 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0032180 | RBH | 0.000000 | 0.000000 | 1.877178 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0032050 | RBH | 0.112496 | 0.0 | 3.400575 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0031640 | RBH | 0.435211 | 0.431494 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0031750 | RBH | 1.989213 | 16.080999 | 13.138718 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0494000 | RBH | 2.0752695 | 2.7835705 | 0.605737 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0031510 | RBH | 0.940720 | 0.340532 | 1.040334 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0523000 | RBH | 1.7454435 | 2.937991 | 2.2279905 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0031840 | RBH | 0.028377 | 0.086483 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0031610 | RBH | 0.351579 | 4.192931 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0031970 | RBH | 41.300823 | 10.545316 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0031830 | RBH | 0.256149 | 0.797506 | 0.231910 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0031450 | RBH | 0.0 | 4.890843 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G032110 | RBH | 0.709453 | 3.121891 | 2.557580 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0031870 | RBH | 0.353345 | 11.072089 | 2.993015 |
