Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0726300 | OGI:02085380 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:30206964-30208303 | ||||||||
| Gene Symbol | DOF4, OsDof4, OsDof8, Dof8, OsDof-8, DOF8 | ||||||||||
| DNA seq | GGCGATGTTGCAACAATGATCGATCCAATTCAGATTTTTTTTTTCACGCGTGCAGTAGATACACAAATGTTAGCTTTCTTGGACAGTTACACGTACCTTTGCAGCAGCAGAAGTGCAGCTAGAGAAGACAAGGAAAAGAAGAAAAAAACTTACAGGGAGAACAGTAGAGTAGATGAATGTAGTAGTAAAAGACATACTAGTGGTAGCTAGTGGTCGTCCTTAAGAAGCGTTTTAACCACAGCTTAATCAAAGACTTAATCAAGGTGATCGTGATGAGTAACTACACCGAGCTAGGGTAGGTAGACATTCGGGTCCGGGACGTCCGTCCAGCAGCTCCCGGCGTTCCAGTACGCCGCCGGCGGCACGTCGCCGAGCTCGAAGATCCCCGCGTCCAGCGACGTGAACGGCGTCATGTCGGCAACGGTGGCGGCAGTGGGCGCCGTCGTCTGTCCGGCGAGTAGAACGGAGGCAATCCCGTCCTCGGTCTTCGCCTGCGCTGCGAAGCTGAACACCGGGAGAGGCGGCGGCGGAGGAGGGGCGAACAGTGACGCGAGCGCTGCCGCTTGGTCGGCGAAAATCGGCGCCGGAGGTGGCACGTCTGTCGGGAAGGGGTTCGTCGTCGTCGTCGTCGTCGTCGCGTGGTTTATGACGGCGATGGTGTTCGACGACGGCGTGGCCGGTGTCGTCGGGGTCGTCGCCGCGGCGGCCGTGGGGCTCGTGTTGCCGCTACCGCCGCTACTGGATCGTGGGGACGACGCCGAGGCGCGCCGCTGGTTCTTGGCGTTGTCAGTTGCCGCCGTCGGCGTCGACGGGGCCGAGGACGCAGCGGACGAGCTGCCGCTACGCTTGGTCTTGCGGCAGCCGCCGCCGACGGGGACGTTGCGGAGGACGCCGCCCTTGGTCCAGTACCGGCGGCAGCTCTTGCAGAAGTGGCGCGGCTGCGAGAGGTTGTAGTTGTTGTAGTAGCAGAACTTGGTGTTGGTCGACTCGCACCGCGGGCACTTCACCGCCTCCGGCGACGGTATCCCGCCGCACCGCGACGCCGGGCCCTGCTGCGCCTGCGCGCGCCGGATGTCAGCCGCCGCCGCGCCGCCGAACAGCCGCCCGGCGAGCCCCGGGATGGACTGGAACTCCTGCATGAGGCAACGACCGATCGATCGAAGCAGCAGCAGCTAGCTAGCTAGCTAAGCTCGCTCGTTCGGTTCTAGAACAATCTAGAATCAAACACCGCCTCCACGCGCTCACTGGATCATCCCGCTATCTTGGTGGGTGCACGCTGCCTTGTCGACGAGCTGAGCGCGCGCGGCGAGATCGAGCTAGCTCCACCCGCTCAGCTCCTC
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| CDS seq | ATGCAGGAGTTCCAGTCCATCCCGGGGCTCGCCGGGCGGCTGTTCGGCGGCGCGGCGGCGGCTGACATCCGGCGCGCGCAGGCGCAGCAGGGCCCGGCGTCGCGGTGCGGCGGGATACCGTCGCCGGAGGCGGTGAAGTGCCCGCGGTGCGAGTCGACCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCGCAGCCGCGCCACTTCTGCAAGAGCTGCCGCCGGTACTGGACCAAGGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGCAAGACCAAGCGTAGCGGCAGCTCGTCCGCTGCGTCCTCGGCCCCGTCGACGCCGACGGCGGCAACTGACAACGCCAAGAACCAGCGGCGCGCCTCGGCGTCGTCCCCACGATCCAGTAGCGGCGGTAGCGGCAACACGAGCCCCACGGCCGCCGCGGCGACGACCCCGACGACACCGGCCACGCCGTCGTCGAACACCATCGCCGTCATAAACCACGCGACGACGACGACGACGACGACGAACCCCTTCCCGACAGACGTGCCACCTCCGGCGCCGATTTTCGCCGACCAAGCGGCAGCGCTCGCGTCACTGTTCGCCCCTCCTCCGCCGCCGCCTCTCCCGGTGTTCAGCTTCGCAGCGCAGGCGAAGACCGAGGACGGGATTGCCTCCGTTCTACTCGCCGGACAGACGACGGCGCCCACTGCCGCCACCGTTGCCGACATGACGCCGTTCACGTCGCTGGACGCGGGGATCTTCGAGCTCGGCGACGTGCCGCCGGCGGCGTACTGGAACGCCGGGAGCTGCTGGACGGACGTCCCGGACCCGAATGTCTACCTACCCTAG
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| Protein seq | MQEFQSIPGLAGRLFGGAAAADIRRAQAQQGPASRCGGIPSPEAVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSGSSSAASSAPSTPTAATDNAKNQRRASASSPRSSSGGSGNTSPTAAAATTPTTPATPSSNTIAVINHATTTTTTTNPFPTDVPPPAPIFADQAAALASLFAPPPPPPLPVFSFAAQAKTEDGIASVLLAGQTTAPTAATVADMTPFTSLDAGIFELGDVPPAAYWNAGSCWTDVPDPNVYLP |
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| Function | Dof zinc finger protein 4 [UniProtKB/Swiss-Prot:Q6Z345] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0726300 | OsNip_02t0726300-01 | Chr02 | 30206964 | 30208303 | - | RAP2018-11-26 | ||
| CDS seq | ATGCAGGAGTTCCAGTCCATCCCGGGGCTCGCCGGGCGGCTGTTCGGCGGCGCGGCGGCGGCTGACATCCGGCGCGCGCAGGCGCAGCAGGGCCCGGCGTCGCGGTGCGGCGGGATACCGTCGCCGGAGGCGGTGAAGTGCCCGCGGTGCGAGTCGACCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCGCAGCCGCGCCACTTCTGCAAGAGCTGCCGCCGGTACTGGACCAAGGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGCAAGACCAAGCGTAGCGGCAGCTCGTCCGCTGCGTCCTCGGCCCCGTCGACGCCGACGGCGGCAACTGACAACGCCAAGAACCAGCGGCGCGCCTCGGCGTCGTCCCCACGATCCAGTAGCGGCGGTAGCGGCAACACGAGCCCCACGGCCGCCGCGGCGACGACCCCGACGACACCGGCCACGCCGTCGTCGAACACCATCGCCGTCATAAACCACGCGACGACGACGACGACGACGACGAACCCCTTCCCGACAGACGTGCCACCTCCGGCGCCGATTTTCGCCGACCAAGCGGCAGCGCTCGCGTCACTGTTCGCCCCTCCTCCGCCGCCGCCTCTCCCGGTGTTCAGCTTCGCAGCGCAGGCGAAGACCGAGGACGGGATTGCCTCCGTTCTACTCGCCGGACAGACGACGGCGCCCACTGCCGCCACCGTTGCCGACATGACGCCGTTCACGTCGCTGGACGCGGGGATCTTCGAGCTCGGCGACGTGCCGCCGGCGGCGTACTGGAACGCCGGGAGCTGCTGGACGGACGTCCCGGACCCGAATGTCTACCTACCCTAG
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| Protein seq | MQEFQSIPGLAGRLFGGAAAADIRRAQAQQGPASRCGGIPSPEAVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSGSSSAASSAPSTPTAATDNAKNQRRASASSPRSSSGGSGNTSPTAAAATTPTTPATPSSNTIAVINHATTTTTTTNPFPTDVPPPAPIFADQAAALASLFAPPPPPPLPVFSFAAQAKTEDGIASVLLAGQTTAPTAATVADMTPFTSLDAGIFELGDVPPAAYWNAGSCWTDVPDPNVYLP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0726300 | OsNip_02t0726300-03 | Chr02 | 30206970 | 30208246 | - | RAP2018-11-26 | ||
| CDS seq | ATGCAGGAGTTCCAGTCCATCCCGGGGCTCGCCGGGCGGCTGTTCGGCGGCGCGGCGGCGGCTGACATCCGGCGCGCGCAGGCGCAGCAGGGCCCGGCGTCGCGGTGCGGCGGGATACCGTCGCCGGAGGCGGTGAAGTGCCCGCGGTGCGAGTCGACCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCGCAGCCGCGCCACTTCTGCAAGAGCTGCCGCCGGTACTGGACCAAGGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGCAAGACCAAGCGTAGCGGCAGCTCGTCCGCTGCGTCCTCGGCCCCGTCGACGCCGACGGCGGCAACTGACAACGCCAAGAACCAGCGGCGCGCCTCGGCGTCGTCCCCACGATCCAGTAGCGGCGGTAGCGGCAACACGAGCCCCACGGCCGCCGCGGCGACGACCCCGACGACACCGGCCACGCCGTCGTCGAACACCATCGCCGTCATAAACCACGCGACGACGACGACGACGACGACGAACCCCTTCCCGACAGACGTGCCACCTCCGGCGCCGATTTTCGCCGACCAAGCGGCAGCGCTCGCGTCACTGTTCGCCCCTCCTCCGCCGCCGCCTCTCCCGGTGTTCAGCTTCGCAGCGCAGGCGAAGACCGAGGACGGGATTGCCTCCGTTCTACTCGCCGGACAGACGACGGCGCCCACTGCCGCCACCGTTGCCGACATGACGCCGTTCACGTCGCTGGACGCGGGGATCTTCGAGCTCGGCGACGTGCCGCCGGCGGCGTACTGGAACGCCGGGAGCTGCTGGACGGACGTCCCGGACCCGAATGTCTACCTACCCTAG
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| Protein seq | MQEFQSIPGLAGRLFGGAAAADIRRAQAQQGPASRCGGIPSPEAVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSGSSSAASSAPSTPTAATDNAKNQRRASASSPRSSSGGSGNTSPTAAAATTPTTPATPSSNTIAVINHATTTTTTTNPFPTDVPPPAPIFADQAAALASLFAPPPPPPLPVFSFAAQAKTEDGIASVLLAGQTTAPTAATVADMTPFTSLDAGIFELGDVPPAAYWNAGSCWTDVPDPNVYLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.738484 | 6.614935 | 14.394395 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g49440 | RBH | 3.067287 | 4.258684 | 3.570263 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0726300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0032040 | RBH | 1.558092 | 1.958308 | 14.590470 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0032140 | RBH | 0.430893 | 3.904878 | 6.348523 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0032010 | RBH | 3.453551 | 9.947696 | 15.591869 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0031610 | RBH | 0.749021 | 0.135965 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0031710 | RBH | 20.084627 | 7.725045 | 20.619783 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0493600 | RBH | 38.48526 | 27.1734485 | 6.4956445 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0031480 | RBH | 1.797844 | 0.922649 | 2.214031 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0522500 | RBH | 25.8446785 | 9.0919915 | 15.8950385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0031800 | RBH | 0.590494 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0031570 | RBH | 1.966466 | 3.510597 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0031930 | RBH | 35.303371 | 11.484737 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0031790 | RBH | 3.271416 | 0.334573 | 4.942912 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0031410 | RBH | 3.546589 | 3.090369 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G032070 | RBH | 1.832519 | 0.549619 | 8.273576 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0031830 | RBH | 8.311333 | 4.625292 | 12.275868 |
