Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0712400 | OGI:02083210 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:29501312-29502455 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACAATCAAACAAAAACTCCTTAAGACCAAGCCAAGAACTAGAAGAAAATACAGCAAGCATCACAAACTAGTAAGTAAGCTACAGGAGGTTCTTACTTAAAAACCTTAACAACCTCCTTAACCTGAAAGGCTAATACGACTTACTTAACCACGCGAAATCAAGATCGAGCAAGAAGTATGGATGGATTAGTGCTTACTCTAATATGGCAACTAATCCAACCAAGACAGGGGCGAGAGGAAGAGATCAACAAGAGATTTTTAAGTATGAATGTCTTCATACTTAGAACTAATCCAATCCTCGTGGTGGTGTTGCTCCTCGCCGTGCGGTTGCAGGTGCGGGTGGTGGTGGTGCTTCTGCTGCTCGCGGTGGTGGGTCGGCGCGACCATCATGCCGGTCTGGAGCGCGTCGACATGGGAGCCGACCTCGATGGCCTTCTTCCGGATCGAGGCCGCGGACAGCGTGCCGCCGTCGGGCTCGCGGGGCTCGCCTGCGCCGCCACCCTCTGACGGCGAAGCCAGCAAGGAGATCTCCTCGGGGAAGTTGAGCCGCGCCGACCGGCCGCGAAGGTAGAACACCGCAGGGTCGTCGTCGTCGGAGTGGCGGCGAGGTGGCCAGATCCGGCCTGGGCTTGCCGGATCTGGCCTCGGGCAGCGACGGCGGCGGCTCGCCGGCGAGGTCAGCGCCGGTCGCCCTCCTCCCGCTCCCCTCTCTCCCTCCAGCCGTCGCCGACGAAGCTCATCATCATCGTCGCCGACCGCCCTCTCTTCGCCCGCATCGCCGCCACCTTCGTCCTCCCGCTCTCCCTCCTCTTCCTCATCCACATCGCCATCTCCCACACCCTCTTCTCCCACATCGACTCCGCCCTCGACTCTGCCGCCCCCGGCACCTCCGCCCAGCGCCGCCTCGCCGACGACTGGCTCGCCCTCCTCCTCTTCAAGGCCGCCGAGCTCCTCCCTGCCGTCGCGGACCTCCCCGCCCGCCGGTCGATGGCGGCCGGTGGAGCGGATCGACGAGTGGGCGCCGCCGTGGGAGAGAGGCGAGGGGGCGAGGGTAGGAAGGGGATTTGGGGGGAGCGGTGAGGAGACGGGAGTTCGCAGCGGGTCTCCTCGCAGGGGCGAGGGCCGGCTCTCCGCGAAAAGCGAGC
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| CDS seq | TCGCTTTTCGCGGAGAGCCGGCCCTCGCCCCTGCGAGGAGACCCGCTGCGAACTCCCGTCTCCTCACCGCTCCCCCCAAATCCCCTTCCTACCCTCGCCCCCTCGCCTCTCTCCCACGGCGGCGCCCACTCGTCGATCCGCTCCACCGGCCGCCATCGACCGGCGGGCGGGGAGGTCCGCGACGGCAGGGAGGAGCTCGGCGGCCTTGAAGAGGAGGAGGGCGAGCCAGTCGTCGGCGAGGCGGCGCTGGGCGGAGGTGCCGGGGGCGGCAGAGTCGAGGGCGGAGTCGATGTGGGAGAAGAGGGTGTGGGAGATGGCGATGTGGATGAGGAAGAGGAGGGAGAGCGGGAGGACGAAGGTGGCGGCGATGCGGGCGAAGAGAGGGCGGTCGGCGACGATGATGATGAGCTTCGTCGGCGACGGCTGGAGGGAGAGAGGGGAGCGGGAGGAGGGCGACCGGCGCTGACCTCGCCGGCGAGCCGCCGCCGTCGCTGCCCGAGGCCAGATCCGGCAAGCCCAGGCCGGATCTGGCCACCTCGCCGCCACTCCGACGACGACGACCCTGCGGTGTTCTACCTTCGCGGCCGGTCGGCGCGGCTCAACTTCCCCGAGGAGATCTCCTTGCTGGCTTCGCCGTCAGAGGGTGGCGGCGCAGGCGAGCCCCGCGAGCCCGACGGCGGCACGCTGTCCGCGGCCTCGATCCGGAAGAAGGCCATCGAGGTCGGCTCCCATGTCGACGCGCTCCAGACCGGCATGATGGTCGCGCCGACCCACCACCGCGAGCAGCAGAAGCACCACCACCACCCGCACCTGCAACCGCACGGCGAGGAGCAACACCACCACGAGGATTGGATTAGTTCTAAGTATGAAGACATTCATACTTAA
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| Protein seq | SLFAESRPSPLRGDPLRTPVSSPLPPNPLPTLAPSPLSHGGAHSSIRSTGRHRPAGGEVRDGREELGGLEEEEGEPVVGEAALGGGAGGGRVEGGVDVGEEGVGDGDVDEEEEGEREDEGGGDAGEERAVGDDDDELRRRRLEGERGAGGGRPALTSPASRRRRCPRPDPASPGRIWPPRRHSDDDDPAVFYLRGRSARLNFPEEISLLASPSEGGGAGEPREPDGGTLSAASIRKKAIEVGSHVDALQTGMMVAPTHHREQQKHHHHPHLQPHGEEQHHHEDWISSKYEDIHT |
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| Function | Ethylene-responsive transcription factor ERF008 [UniProtKB/Swiss-Prot:O22174] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0712400 | OsNip_02t0712400-01 | Chr02 | 29501312 | 29502455 | - | RAP2018-11-26 | ||
| CDS seq | TCGCTTTTCGCGGAGAGCCGGCCCTCGCCCCTGCGAGGAGACCCGCTGCGAACTCCCGTCTCCTCACCGCTCCCCCCAAATCCCCTTCCTACCCTCGCCCCCTCGCCTCTCTCCCACGGCGGCGCCCACTCGTCGATCCGCTCCACCGGCCGCCATCGACCGGCGGGCGGGGAGGTCCGCGACGGCAGGGAGGAGCTCGGCGGCCTTGAAGAGGAGGAGGGCGAGCCAGTCGTCGGCGAGGCGGCGCTGGGCGGAGGTGCCGGGGGCGGCAGAGTCGAGGGCGGAGTCGATGTGGGAGAAGAGGGTGTGGGAGATGGCGATGTGGATGAGGAAGAGGAGGGAGAGCGGGAGGACGAAGGTGGCGGCGATGCGGGCGAAGAGAGGGCGGTCGGCGACGATGATGATGAGCTTCGTCGGCGACGGCTGGAGGGAGAGAGGGGAGCGGGAGGAGGGCGACCGGCGCTGACCTCGCCGGCGAGCCGCCGCCGTCGCTGCCCGAGGCCAGATCCGGCAAGCCCAGGCCGGATCTGGCCACCTCGCCGCCACTCCGACGACGACGACCCTGCGGTGTTCTACCTTCGCGGCCGGTCGGCGCGGCTCAACTTCCCCGAGGAGATCTCCTTGCTGGCTTCGCCGTCAGAGGGTGGCGGCGCAGGCGAGCCCCGCGAGCCCGACGGCGGCACGCTGTCCGCGGCCTCGATCCGGAAGAAGGCCATCGAGGTCGGCTCCCATGTCGACGCGCTCCAGACCGGCATGATGGTCGCGCCGACCCACCACCGCGAGCAGCAGAAGCACCACCACCACCCGCACCTGCAACCGCACGGCGAGGAGCAACACCACCACGAGGATTGGATTAGTTCTAAGTATGAAGACATTCATACTTAA
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| Protein seq | SLFAESRPSPLRGDPLRTPVSSPLPPNPLPTLAPSPLSHGGAHSSIRSTGRHRPAGGEVRDGREELGGLEEEEGEPVVGEAALGGGAGGGRVEGGVDVGEEGVGDGDVDEEEEGEREDEGGGDAGEERAVGDDDDELRRRRLEGERGAGGGRPALTSPASRRRRCPRPDPASPGRIWPPRRHSDDDDPAVFYLRGRSARLNFPEEISLLASPSEGGGAGEPREPDGGTLSAASIRKKAIEVGSHVDALQTGMMVAPTHHREQQKHHHHPHLQPHGEEQHHHEDWISSKYEDIHT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.202916 | 1.043211 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0712400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0031160 | SBH | 0.0 | 3.267757 | 1.400173 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0030790 | SBH | 1.427319 | 9.571434 | 7.559703 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0480200 | RBH | 4.017575 | 17.53404 | 25.115901 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0030540 | RBH | 0.0 | 0.525509 | 0.409007 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0508800 | RBH | 5.8164875 | 18.933796 | 20.706037 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0030830 | RBH | 0.023281 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0030610 | RBH | 0.156165 | 4.518303 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0030970 | RBH | 0.0 | 3.904923 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0030820 | SBH | 0.000000 | 1.122455 | 0.579999 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0030410 | RBH | 0.026086 | 2.822490 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
