Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0706400 | OGI:02082460 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:29190864-29195545 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATCAGGCATCATTCTTTAGCTCCTATGCCACAGATCAATTATCAGGTACCTTTTCCAGTTTCCTGCTGGGTTCCCTACTTTTCATCAAGTGCACATCTATGTTGGGAATCCAATCTTTGATGTGCTATATTAGTATATGGTGTGGATCCTGTTCTTATGATGTCACCGTCACATAATTACATGCTTACTTGCAGAGGTAAATACATGATTAATCAGAAAAATATCAGAAGTTTTTCTTTGGGAGTGCTAGGAGTTTGGTTCATTTGATCATAAATTTTCTTAGCTTGTTTCATCTTTCATATTATTTTTCTCAATGCACCACATATCATGACAGGCTGATATTGTTAGTCAACGTGATCAGGAAATCCAATACCCTTGGCTGGTAAGTTTGAGTTATAAATATTCAAATAAATATTTGAGTCCTTTTGTTTTCAAGTACCAAATCCATAGAATAGATTATTGCCAAGAGAGCACCCTGGTACTTGACTGTAGAGATTTGTATCCCATGTAATACAAGAATCTTGGCCACTTGCATGGTGGGGGTTCTTCCCCATCGTCCACACCTTAGGATGTTGACGATTTGAATTATCACGTGGGAGATTCGCATATGTGCAGGTGACTTTTGTTTTTGCTGATGCGACTGATGTAAAGGAGCCAGTAAGTATTTTGTAATCCACACTTTCAGGCATAACCTATTTCTAAACTCTCATCATCATAACTGGATGACCTGTTCCTCTCTCTTATTAAAAACTTGCAGTTTGTGGCCTAGTCAACTATTTGATGTTGGCCAAAATGTAGACGTGGCAGGACTTTCATTTTAATTGGAAGTCCTGAGGACTAAGATGAAAGAACAAAAATCTGAAGTAAATGCTAAGAATTTACAATGTTAAAAAAAAAACTGAACTACCAAATCGCATTTTGGCAGGAACAAACCATTTAGAAATGTTCAGCGAATTCATTTTGTATAGCTTTTGAAGTTCTCTTGAACAATTAGTCCTTTGAGAAAAGAAAGTTATGGAATGATGCCATTGGAATGTTCACCAAGAAAGAGAAATAAAACATGATTTTCTACATGGAATGGACCATTGTTATAATAAGTGGTAATTTCACCATCCTACAGGGTTACCAGAAAAGAAATTCCTTAGACTGTTTGGATCATGCTTGGATCAGATCTGTCATTTTCTTTTTATAGAAAATCTGGAGGTTCATAGTACCCTGAACTATCTACCAATCACTGTGCTACGGAAATCAAACATGTAAGTATGTATCCTCTCGCATAACATGCAGTTATCCCATGAATCTAGTTATGGCACTTCATTGTACACTAGATCCTATTTACATATTTTTTACTAGAATAAACCTATATTGCTCCCACCAGCAAGGTTAGTGACATTTTGGGATGACTGCAATTACATTGAAAAAAAAGGTTTATGTAAGTTTTTCTTGAAAAATGTGTTCATGATATATTTATATTCCGTAAACATGTTACAGTAGAAATTAATGGCCAAACCCAAACTTACATGTCAATTTCCAAAATGTCAATTATCTGTGACTGGACATCAAAGTGACTTAATGTTTGAATGAAATAGCTATTTTCAATATAGTTTCTGTCTATGAACATTTTGACTGAATATCTCCAGTATGTCGTCATTATGCGCAAAGGGGTTGAATTCTAGGTGTTGATATGGATTGTTTTTATCTGTTTTGTTTGACTACATATCACAGTTGAATAATATATCTGGTTTGCATGTCATTCTTTTCTAGCACCATGACAGATTAGTTTAGTTGAAATATGAAGGGGTAGATAAGTACTTCTATCCTTTCTGGCGCAATAAAAGCTTATTTTCCTCAATTAGAGGAAGTCCAAATAGGCATATATTTAATGTGTGTCCGTTCCTACTCATTTTATTGGCATTTCCTTTAAATAGGTTCAGTGAAGCTGCAGAGTGAAGGTTATAGTGAAGACTGGCCTGCTATATGTGCATTGCACAAGACAATCTGCAGTCTTTTTGTCCTCTTGATTTGAATATAAAGGTTCTAATTCTACTAAAAATGAATATAATACAAGCATTCAATAAACTGTTTAGGACTTGCACATGTCTCATCATTTAGATTGTGATAAAATAAAAAAAAATATTTGAACATTTCTGTTTGAGAGGGGAGGATGTTAATACAAATTTCTAGTCTTCTGTTTTTACCTGGAAGGCTTCATAGCCACAGCTTCTATTCCAAAAACTATTTGCTTGTCGTAATCACTGAATTGATACACATTTCATGGTTTCTACAGCCATTCAGTTGACTTGAATCAGTACCAGAAATCACCTTTACTTGAAACATTCTACAAGTTGTTAGTGCCAATACCTTCACATAGTGATAACATATTACCTAGCATATGTTAACCATCAAATGCACCCTTAACACATTGTCCCAAACAGGGATCAAAGGATAAATGATCTCTCTAAATAGTTCTTTTTTTCTTCATATGTGTGTTAGGGTTGGGGTGTGGCAGAGGGGGTATTAGAAGGCCAAACCTCTGTGGTACACGTCTATAGATTCCAAATAAATGATACAGTACCTCTTTGGTACTCCCATCAACATGGTTCACACCACACCACTACACCAGTGACACCACCACCACCATTACAGGGTATTTTTCTTGGCCCCTCTGTATAAATAGCAGCACCATGTTCACTCTTTGTTCCATTGAAATACAAGCAACCATAAACAGTAGCCATTTCTAGGACCTTGGCCTTTCTTGAAGGAGGATGAGTTCATCCTGGACAACAAAGCAGAATAAGGTGTTTGAGAGGGCGCTGGCAATATATGACAGGGATACGCCAGATCGCTGGCAGAATGTGGCACGGGCAGTTGGTGGTGGAAAGTCAGTTGATGATGTGAAGAGGCACTATGAAAAGCTGATCAAGGACGTGGATCGCATTGACTCTACAGGAGGCCATCAAGGATCCCATTACAACAGCTCCAATGCTAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTCTCGGGGCAGTGCCAATGAGGACCAGAGGTAATTTGGTGGCTCATCACTCTCTTCATGATCGTTCCATATATGCACCATCATTACCCTGTACATCCTCTTCTTATGAAGTTATTTACACAGGCCATGACTCATGAGTATATGTTTACTTGAGCTAGAGGCTTTTGTTCATTTTATTGTTTCTAGCTTACTATATTCTGCTGTCCACCTTGATTATCTTTTCCCTTCTAATCTGCAACATGTTTTTATTGCTTGTTCTGCTTTGTTCCGTTAGCTAGCATTTCTAGTTATTTTGCTTGTGTATGTGGACACAACCTTTGGTTATCCTTACCATGTGATTTCCACAAAGTAAGGCTAACAATTGTTCTTAGGATTTAGCTGGAGGCGACTTGTTTCTCAAGTCGTGCCATTAGTTTGTTAATTAGACATTCTTATGAAAACTTGAAATTTTACTAGCTCTTCAAAGTGCCTTTTTTTTTGGCCTTATCTAAACTACAATTGCCGTATCTCTTTATTACAATTACTGGTAACAAGTTGTGCTATTTTCTTCCTGTTTTTTGCTCTATGTTTGTTGGGACTTTATTTCAATGAGAAAAGACATTATTTCCTTTTGCCATCCCTTGTCTAATTGTCAATTACATGCTTTGTTTGGCAACATGCAAATTTAACTAGATGGAAATATTCTGTACGGGAAACTGCAGGCAATATGCAAATTCAACATCATCTGCCCATCTGATCTAATTTGGTTTCGATTCTAAATTCTTTAATCTGGGGAAAGATATGGAGATAATCTAGTAGTCCTAGCTAGTTCCTAGCTATTAAACATAACTCGGCCATTCAATTATTTGTTGAAGAGATGAGTGTGCACTCTGCTGGAAGGATAAGTAGGCCAGGACTCATAACTACATATTGTAAGGCCCTAGTCTCGTGGCCCAGAAAATCGTTTATGCAAGTGAACAATTGGCATTCTTTCTATCAGTATGTCTGCACTGCTTCACACTTGCTTTTTAATTTGATTACTCTAGTTGTGTGCGTCTGTGAGAAAATAGACAGGCAAAGGCGCCAAGAATTGTATCCATCTTTTTGGAACCTGCCTTTGGATTCCTCTCCAGAAAGAGAAAGGCCCCATGAGAATGGAACCTAGCACAGCATTAAGCAACCATATGCATCTTTTACCGAAGAGTTGCAGGAAAAGCAACATAGAACCCCACCATCTTAAAGTTTTTCGCCTTTATGACGGGTATAAAGCGCTTTTAAATAGTGGGGCTTTTCTTGTCTTGCATGGAAGTGGTAACATTTTATCTTCATCTTTCCGTTGGAGAAGATGAATAAATGGGTTTATTATTGCTTTTTTAATTTCTTTTCTTGTTGCAGGAGGAGGTACCACAACTTTCAGTGAATGTGACATTGACATCTCGAAAGCCGAAAGCAGCCTGAGTTCCAGCAAGACCGACACATATGATCGACTGTCCCTGCAGATGCTACCTTCACTATTTCGTTTATGTTTTCTATTATGCGCGTGTGTGAATCAGAACTGGCCCTAATAGACCAGTAGTTAGTAACTTAGTTTCAATTGAGCTATGACTGGTTTGCTGAATTATACTGTTGTATTCCATCTGACGATGCTGTATATGTAATATCTGATGGAAAGTTTATAATCTTCTC
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| CDS seq | ATGAGTTCATCCTGGACAACAAAGCAGAATAAGGTGTTTGAGAGGGCGCTGGCAATATATGACAGGGATACGCCAGATCGCTGGCAGAATGTGGCACGGGCAGTTGGTGGTGGAAAGTCAGTTGATGATGTGAAGAGGCACTATGAAAAGCTGATCAAGGACGTGGATCGCATTGACTCTACAGGAGGCCATCAAGGATCCCATTACAACAGCTCCAATGCTAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTCTCGGGGCAGTGCCAATGAGGACCAGAGGAGGAGGTACCACAACTTTCAGTGA |
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| Protein seq | MSSSWTTKQNKVFERALAIYDRDTPDRWQNVARAVGGGKSVDDVKRHYEKLIKDVDRIDSTGGHQGSHYNSSNASSSSSSSSSNSRGSANEDQRRRYHNFQ |
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| Function | Protein RADIALIS-like 3 [UniProtKB/Swiss-Prot:Q6NNN0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0706400 | OsNip_02t0706400-01 | Chr02 | 29190864 | 29195545 | + | RAP2018-11-26 | ||
| CDS seq | ATGAGTTCATCCTGGACAACAAAGCAGAATAAGGTGTTTGAGAGGGCGCTGGCAATATATGACAGGGATACGCCAGATCGCTGGCAGAATGTGGCACGGGCAGTTGGTGGTGGAAAGTCAGTTGATGATGTGAAGAGGCACTATGAAAAGCTGATCAAGGACGTGGATCGCATTGACTCTACAGGAGGCCATCAAGGATCCCATTACAACAGCTCCAATGCTAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTCTCGGGGCAGTGCCAATGAGGACCAGAGGAGGAGGTACCACAACTTTCAGTGA
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| Protein seq | MSSSWTTKQNKVFERALAIYDRDTPDRWQNVARAVGGGKSVDDVKRHYEKLIKDVDRIDSTGGHQGSHYNSSNASSSSSSSSSNSRGSANEDQRRRYHNFQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.179206 | 1.986709 | 1.608883 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g47744 | RBH | 1.433998 | 0.945513 | 0.429333 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0706400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0030630 | RBH | 0.165773 | 0.000000 | 2.755903 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0030720 | RBH | 0.228002 | 1.865406 | 1.384443 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0030600 | RBH | 0.702427 | 1.376213 | 7.313461 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0030170 | RBH | 0.213678 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0030360 | RBH | 3.598245 | 0.000000 | 10.600504 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0475500 | RBH | 4.1667775 | 5.3642715 | 11.6148125 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0030120 | RBH | 0.565794 | 0.204763 | 0.939513 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0030440 | RBH | 1.577637 | 0.041643 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0030200 | RBH | 1.561568 | 1.508258 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0030560 | RBH | 12.064564 | 19.797716 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0030380 | RBH | 1.139787 | 0.0 | 1.251067 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0030020 | RBH | 0.383005 | 1.206847 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G030650 | RBH | 0.306293 | 3.028825 | 3.589267 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0030410 | RBH | 1.772036 | 0.000000 | 1.563181 |
