Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0696650 | OGI:02080680 | 1/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:28630069-28630932 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTGTGTCAACTTGTTTAGATTCAGATTATTTGCATATAGTGACGTGCTTTTGGTTGAAATTCATCAAGAACAGTGGTTGGTCAGGCTATTGTAGTATATTGGAAGTTGGATTGTTTGATCTACAGGCTGCACTACACCCTTTTGCATGGGAATGATTTCAATCAGCATAATACATAGATCTCAACAACCGCATGTAACCAAAATATTCAGTTTGAGTAATATTCAGATTCTCCAAATATAATACATCCTATAATCATTTATAATACGTCCTATAATTTTCTACAACCATAGATTTATATACAGGAATGATACTTCTGCAATATGGTACTTAGGAAGTTCCATGATTCACAACAGAACAACTGGTAACTCCAATTTTCTAAATTAACTAATACTAATGATATCGAATGGTGATTTCACACTCTAGAGCAGACTAGGATTAAAAAAAATATTTAAAATCTCAAACTGCAGGGTAAAAAAACAATAATAGATCATATATAAGGAGATTCTCCAGTAAAACATTATGTATTCTAGAGCTAATAAGTCAAAATAGATCGATTATCTCATGAAAAATCAAAGTATACATCACATATTTTAGTTCATATACTCACAGTATAAAGGCAGCAACGGTAGATCCCAAGGTGGCTCGGCTCGACCAGGATGAAGAAAGTGGAGGCGCGACTCCGGATCCAGCAGGGAGAGACGGCACCGGGACTGGAGATGGTGCCGGCGGAGGGAGCAGCAAGCGCCCCCCTCCCCCCGACGACTACCCTAGCTTGTTTGAGGCGCAAGTGATCTGCAAGTTTTGGGCATGGAACGGGAGCGAAGCAGGCTGGTGTGTGTAGATCTGGGGAGTAGAGCGGCGGC
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| CDS seq | CCGCCGCTCTACTCCCCAGATCTACACACACCAGCCTGCTTCGCTCCCGTTCCATGCCCAAAACTTGCAGATCACTTGCGCCTCAAACAAGCTAGGGTAGTCGTCGGGGGGAGGGGGGCGCTTGCTGCTCCCTCCGCCGGCACCATCTCCAGTCCCGGTGCCGTCTCTCCCTGCTGGATCCGGAGTCGCGCCTCCACTTTCTTCATCCTGGTCGAGCCGAGCCACCTTGGGATCTACCGTTGCTGCCTTTATACTGTGAGTATATGA |
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| Protein seq | PPLYSPDLHTPACFAPVPCPKLADHLRLKQARVVVGGRGALAAPSAGTISSPGAVSPCWIRSRASTFFILVEPSHLGIYRCCLYTVSI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0696650 | OsNip_02t0696650-00 | Chr02 | 28630069 | 28630932 | - | RAP2018-11-26 | ||
| CDS seq | CCGCCGCTCTACTCCCCAGATCTACACACACCAGCCTGCTTCGCTCCCGTTCCATGCCCAAAACTTGCAGATCACTTGCGCCTCAAACAAGCTAGGGTAGTCGTCGGGGGGAGGGGGGCGCTTGCTGCTCCCTCCGCCGGCACCATCTCCAGTCCCGGTGCCGTCTCTCCCTGCTGGATCCGGAGTCGCGCCTCCACTTTCTTCATCCTGGTCGAGCCGAGCCACCTTGGGATCTACCGTTGCTGCCTTTATACTGTGAGTATATGA
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| Protein seq | PPLYSPDLHTPACFAPVPCPKLADHLRLKQARVVVGGRGALAAPSAGTISSPGAVSPCWIRSRASTFFILVEPSHLGIYRCCLYTVSI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.669017 | 5.863858 | 1.500207 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0696650 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0325900 | SBH | 15.5172115 | 38.874918 | 90.3779985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0339200 | SBH | 17.6567645 | 67.2459255 | 34.3706515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0029700 | RBH | 5.837626 | 2.379966 | 3.813101 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
