Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0679200 | OGI:02078210 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:27737378-27738930 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CACTTCTGTAACTAAGCCTCAGGATGAACATAATCTCAAATGTTTCGAGAACATCAAATGTCAATTACAGTCTTATTTCTCGTTGCAAACGTCTATATTTCTCTTGCATTCTCAAGAGTTTCCGTGAAAGCTCCTGATTCCCTGTCAGCATCAACCCGTTCAACACACGGTTGAACATGAACCTTCTAGGCAGATAACCTCTATCCACCATTTCTTCCACCATCCTTGCAGCCAGTACCATGTCCTCAGCCCTCTTGCGCATAAACATAGCACTTATTATGATGTTGTATGTGTCTTGGTTGGGCAGGCACTCCTCTCCTTTACTCATCTTCTCAAACAAATCCAAACCCTTTTCCATCTCCCCTTCCTCAAATAAATACCTTATAAGAACATTGTATGTCTGAACGATGGGTTCGCAGCCTCCATTCTTCATCCTCTCCAACAGCTTCAAACCTCGGTCAATCTTCCCAGCATGGCAGAGGCCTCGGATCAACACAGTGTATGTAACCACGTTAGGGACATAGCCCTTAACACGCATACCATCAAACACCGTTACTGCATCCTCCACATTACCCTTCTTGCAGATCACCTGAATAAGCGCATTGTAGGTAGCAACCGATGGAGCACACCCTTCTTTAGCCATTTCATCAAACACCTTGCGAGCTTTCTCCAGCTGCCCGGCAACACCCAGCCCATGAACCATGGTAGTGTACGAGACGACGTCGGGCTTACAGCTCTCGTCTTTACTCCCCCTCTTCTTCATCTGGAGGAAGAAGTCCCATGCGTGCCGTAGCTGTCCAGCACGGAAGAAGCCTTTAAGGATGATGTTATAGGTGGTCTTCGTGGGGGCAATACCGGACTCGACCATCAGCCGCAGCACGTCGAGCGCGCGGGAGGTGTCCTTGACGCGGCACCATCCGTCGGCGAGCGTGTTGTACGTCACCACGTCGGGGGTGAAGCGCTGCTCAAGAGCGCGGACGAGGGAGGCGGCCTTGCCGGCGTGGCGCGACTTGGACAGAGCGTCGAGGAGGGAGTTGAACAGGGGGAGGTCCTGCGCGACGCGGTGGGAGCGGTGGAGCGAGAGGAAGAGGCGGACGGCGAGGTCGGGGCGGCGCTGCGACACGGCGAGGCGCTCGAAGAGGATGGGGAAGGTGCGCGGGGTGAAGGCGAGGCGGTGGCGCGGGAAGAGGCCGAGGATGGAGTTGGTGAGCTGGCGCGGGCGGCGGAGGCGCGCGGAGAGGTCGAGCGCGAGGTCGAGCGTGGAGGGACCCACGGCGTGCGCGCGCGGCGGGAGGTGGAGGAGCGAGTGGAAGAAGAGGAGCGCGCGCGGCGCGTGGTGCCAGAGGAGCTTGAGGACGGAGTCGGCCACGGGGGTCGGGAGCGACGGCGCGACGGCGAGGAGGGACGCCGAGAGGGAGCGCGTCGAGGCCGGCGTGAGGGCGGACGAAGGGTGGTTCAGCACGACGGCGGCGATCTGGCGAGGGCACGGAGCTGGTGCGGCCGAGGTCGGTGTCGGCGGTGGGCGGGGCAGCGGCGGCATTGGAGAGCTTCGT
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| CDS seq | ATGCCGCCGCTGCCCCGCCCACCGCCGACACCGACCTCGGCCGCACCAGCTCCGTGCCCTCGCCAGATCGCCGCCGTCGTGCTGAACCACCCTTCGTCCGCCCTCACGCCGGCCTCGACGCGCTCCCTCTCGGCGTCCCTCCTCGCCGTCGCGCCGTCGCTCCCGACCCCCGTGGCCGACTCCGTCCTCAAGCTCCTCTGGCACCACGCGCCGCGCGCGCTCCTCTTCTTCCACTCGCTCCTCCACCTCCCGCCGCGCGCGCACGCCGTGGGTCCCTCCACGCTCGACCTCGCGCTCGACCTCTCCGCGCGCCTCCGCCGCCCGCGCCAGCTCACCAACTCCATCCTCGGCCTCTTCCCGCGCCACCGCCTCGCCTTCACCCCGCGCACCTTCCCCATCCTCTTCGAGCGCCTCGCCGTGTCGCAGCGCCGCCCCGACCTCGCCGTCCGCCTCTTCCTCTCGCTCCACCGCTCCCACCGCGTCGCGCAGGACCTCCCCCTGTTCAACTCCCTCCTCGACGCTCTGTCCAAGTCGCGCCACGCCGGCAAGGCCGCCTCCCTCGTCCGCGCTCTTGAGCAGCGCTTCACCCCCGACGTGGTGACGTACAACACGCTCGCCGACGGATGGTGCCGCGTCAAGGACACCTCCCGCGCGCTCGACGTGCTGCGGCTGATGGTCGAGTCCGGTATTGCCCCCACGAAGACCACCTATAACATCATCCTTAAAGGCTTCTTCCGTGCTGGACAGCTACGGCACGCATGGGACTTCTTCCTCCAGATGAAGAAGAGGGGGAGTAAAGACGAGAGCTGTAAGCCCGACGTCGTCTCGTACACTACCATGGTTCATGGGCTGGGTGTTGCCGGGCAGCTGGAGAAAGCTCGCAAGGTGTTTGATGAAATGGCTAAAGAAGGGTGTGCTCCATCGGTTGCTACCTACAATGCGCTTATTCAGGTGATCTGCAAGAAGGGTAATGTGGAGGATGCAGTAACGGTGTTTGATGGTATGCGTGTTAAGGGCTATGTCCCTAACGTGGTTACATACACTGTGTTGATCCGAGGCCTCTGCCATGCTGGGAAGATTGACCGAGGTTTGAAGCTGTTGGAGAGGATGAAGAATGGAGGCTGCGAACCCATCGTTCAGACATACAATGTTCTTATAAGGTATTTATTTGAGGAAGGGGAGATGGAAAAGGGTTTGGATTTGTTTGAGAAGATGAGTAAAGGAGAGGAGTGCCTGCCCAACCAAGACACATACAACATCATAATAAGTGCTATGTTTATGCGCAAGAGGGCTGAGGACATGGTACTGGCTGCAAGGATGGTGGAAGAAATGGTGGATAGAGGTTATCTGCCTAGAAGGTTCATGTTCAACCGTGTGTTGAACGGGTTGATGCTGACAGGGAATCAGGAGCTTTCACGGAAACTCTTGAGAATGCAAGAGAAATATAGACGTTTGCAACGAGAAATAAGACTGTAA
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| Protein seq | MPPLPRPPPTPTSAAPAPCPRQIAAVVLNHPSSALTPASTRSLSASLLAVAPSLPTPVADSVLKLLWHHAPRALLFFHSLLHLPPRAHAVGPSTLDLALDLSARLRRPRQLTNSILGLFPRHRLAFTPRTFPILFERLAVSQRRPDLAVRLFLSLHRSHRVAQDLPLFNSLLDALSKSRHAGKAASLVRALEQRFTPDVVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMRVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVEEMVDRGYLPRRFMFNRVLNGLMLTGNQELSRKLLRMQEKYRRLQREIRL |
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| Function | Pentatricopeptide repeat-containing protein At1g74900, mitochondrial [UniProtKB/Swiss-Prot:Q9S7R4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0679200 | OsNip_02t0679200-01 | Chr02 | 27737378 | 27738930 | - | RAP2018-11-26 | ||
| CDS seq | ATGCCGCCGCTGCCCCGCCCACCGCCGACACCGACCTCGGCCGCACCAGCTCCGTGCCCTCGCCAGATCGCCGCCGTCGTGCTGAACCACCCTTCGTCCGCCCTCACGCCGGCCTCGACGCGCTCCCTCTCGGCGTCCCTCCTCGCCGTCGCGCCGTCGCTCCCGACCCCCGTGGCCGACTCCGTCCTCAAGCTCCTCTGGCACCACGCGCCGCGCGCGCTCCTCTTCTTCCACTCGCTCCTCCACCTCCCGCCGCGCGCGCACGCCGTGGGTCCCTCCACGCTCGACCTCGCGCTCGACCTCTCCGCGCGCCTCCGCCGCCCGCGCCAGCTCACCAACTCCATCCTCGGCCTCTTCCCGCGCCACCGCCTCGCCTTCACCCCGCGCACCTTCCCCATCCTCTTCGAGCGCCTCGCCGTGTCGCAGCGCCGCCCCGACCTCGCCGTCCGCCTCTTCCTCTCGCTCCACCGCTCCCACCGCGTCGCGCAGGACCTCCCCCTGTTCAACTCCCTCCTCGACGCTCTGTCCAAGTCGCGCCACGCCGGCAAGGCCGCCTCCCTCGTCCGCGCTCTTGAGCAGCGCTTCACCCCCGACGTGGTGACGTACAACACGCTCGCCGACGGATGGTGCCGCGTCAAGGACACCTCCCGCGCGCTCGACGTGCTGCGGCTGATGGTCGAGTCCGGTATTGCCCCCACGAAGACCACCTATAACATCATCCTTAAAGGCTTCTTCCGTGCTGGACAGCTACGGCACGCATGGGACTTCTTCCTCCAGATGAAGAAGAGGGGGAGTAAAGACGAGAGCTGTAAGCCCGACGTCGTCTCGTACACTACCATGGTTCATGGGCTGGGTGTTGCCGGGCAGCTGGAGAAAGCTCGCAAGGTGTTTGATGAAATGGCTAAAGAAGGGTGTGCTCCATCGGTTGCTACCTACAATGCGCTTATTCAGGTGATCTGCAAGAAGGGTAATGTGGAGGATGCAGTAACGGTGTTTGATGGTATGCGTGTTAAGGGCTATGTCCCTAACGTGGTTACATACACTGTGTTGATCCGAGGCCTCTGCCATGCTGGGAAGATTGACCGAGGTTTGAAGCTGTTGGAGAGGATGAAGAATGGAGGCTGCGAACCCATCGTTCAGACATACAATGTTCTTATAAGGTATTTATTTGAGGAAGGGGAGATGGAAAAGGGTTTGGATTTGTTTGAGAAGATGAGTAAAGGAGAGGAGTGCCTGCCCAACCAAGACACATACAACATCATAATAAGTGCTATGTTTATGCGCAAGAGGGCTGAGGACATGGTACTGGCTGCAAGGATGGTGGAAGAAATGGTGGATAGAGGTTATCTGCCTAGAAGGTTCATGTTCAACCGTGTGTTGAACGGGTTGATGCTGACAGGGAATCAGGAGCTTTCACGGAAACTCTTGAGAATGCAAGAGAAATATAGACGTTTGCAACGAGAAATAAGACTGTAA
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| Protein seq | MPPLPRPPPTPTSAAPAPCPRQIAAVVLNHPSSALTPASTRSLSASLLAVAPSLPTPVADSVLKLLWHHAPRALLFFHSLLHLPPRAHAVGPSTLDLALDLSARLRRPRQLTNSILGLFPRHRLAFTPRTFPILFERLAVSQRRPDLAVRLFLSLHRSHRVAQDLPLFNSLLDALSKSRHAGKAASLVRALEQRFTPDVVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMRVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVEEMVDRGYLPRRFMFNRVLNGLMLTGNQELSRKLLRMQEKYRRLQREIRL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.157208 | 0.483128 | 0.384234 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0488500 | RBH | 1.541467 | 0.446139 | 1.725239 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g45590 | RBH | 0.060164 | 0.149703 | 0.064813 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0679200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029000 | RBH | 0.129411 | 1.191704 | 0.560856 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029070 | RBH | 0.156878 | 0.0 | 0.110752 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0028930 | RBH | 0.183843 | 0.0 | 0.678041 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028530 | RBH | 0.032386 | 0.009106 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0028670 | RBH | 0.0 | 1.053057 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0352500 | SBH | 5.2388625 | 2.854623 | 1.8374585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0028470 | RBH | 0.000000 | 0.0 | 0.054778 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0379500 | SBH | 4.9101065 | 1.9530195 | 3.4676295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0028820 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028520 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0028810 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0028700 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0028360 | RBH | 0.000000 | 1.080940 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G028940 | RBH | 0.140299 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0028720 | RBH | 0.0 | 0.0 | 0.129061 |
