Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0671800 | OGI:02077210 | 1/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:27297098-27300045 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCCATGGCTAGCTTCCAATTTTTACTATTCAAAGCATCATTCAAAGTATCAGGTTCTGACTCAGCAGTAATTAAATTTGCCCAACGAACTGTACCGTCTGTGTAAACCTTGGGTTTACGAATTCCCTGTTGTAGACGAGTGGCTGGTCGTTGAGGCTGAGTCAGGGCAGCTTCGCTGGATGTGGTAGAGTTGTTCGCCGTAGAGTTGGTCGCCATGGACGATCTTGACGACGAGCTGTCCGAGAGAGGCTCCGACGAGCCCCCGTCGATCGGAACAGCCAAGGAGTCATCGCCGCGTGGAGGAGACGCCGGCTCGGGCGCACTGTCGGAGACACGCGACGAGGAATGGCTGGTGGATGGCGATCGGCTGAGAGAAGAGCCGGCTGCAGCGCCTATATCCCCAGGATGATGCGCCGCAGTTGCGTCAGAAGTCGCAGCGTCGTCAGGGGCTGCGTGAGTGTTAGGAGCCGCGGAGTGCCCGGGCCGCCCGCCGAGCAGAAAACCATGGGTGTTTTGCTCCAAAATTTGCCCTGTTCGCCCAGAAATTTCAGCAGCAGCATCTGCACTCGTAGCAACATCAACTGGAGACTCATGAGCAGGGTTAGTAGAAGAATTAATCACATATTGGTCAACATGTTCGTCCCGAGAAGGATTCAAAAGATGTTCTGGGAGGAGAAGAATTTCAGCCCGGAGACAATGACCAGCATTTGGATGAAGGTCAGAAAATGGGTAGATATGTTCATCAAAAACCACATCACGAGAAATATAAACCCGACCACTTAAACCCTTTGTGCATTACACTGTAACCAAGGAAAACACACCGTTTCAAGCGGAATTGGAGTTTGTGAGAATTGTAAGGGCGTAAATTTGGCCAGCACGCGCAGCCAAAGGTGCGGAGGGAGGTGTAATCAGGTTTGATATGAAAGAGCATTTCTAGAGGTGTGGAGCCTTGGAGAACAGGAGTGGGAAGCCGATTAATAAGGTAAGTACCTGTAAGGAATGCCTCATCCCAAAACTTGAGAGGCATCTGAGCATAGGCTAGAAGGGATAGCCCAACTTCAACAATATGATGGTGCTTACGTTCGGCAGACCCGTTTTGTTGATGTGCATATGGACATGACACACGGTGAGAAATACCGATGCGTTGAAAAAAGGAATTGAGTTTGTGATATTCACCACCCAATCAGTTTGCATAGCTAATATCTTGCGATCAAAGAGTCGTTCTACAGGATTCTGAAAATTATGGAAACATTGAAACACATCGGATTTATGTTTAAGGAGATATATCCAAGAAAATTTGCTGAAATCATCCACAAAACTCACATAATAATTATTCTTCCCAACCGAGGTTGGTGCAGGACCCCAAACATCTGAATGAATAAGCTCTAAAGGAGCACTAGAACGACTCAAAGACTTAGAATAAGGAAGTTGATGACTCTTCCCTTTCTGACAAGCATCACAAACCGAATGCTTGTTTGACTCACTAACACAAGGTAAATTATTATGACTCAAGACTTGTTGAACAATGACTGAGGACGGGTGGCCTAGGCGACAATGCCACTGCGAAGGAGAAAGCTTGATAGCTGCAAAAACTTGTTTATTTGGGAATGATTTCAGAGGATAAAGGCCTCGCTCACATCTGCCTTGGTGAAGTAGTTTCCTCGTTACCTGATCCTTGATAGAAAAATAACGAGGGAAAAGCTCTAAGAAAGCTTGGTTATCAAATGCAAGGCGATGAGCAGAGATTAAACTTTTGTTTGCTTCGGGAACATAAAGAATATTTTTTAGTATAAGATCACGGTGTTGGGTGCGAACAATAGATTGACCAATTTGATTAATCTTCATACCTGAACCACTGGCAGTATGAACTTGATCACCTCCATTGTACTTCTCCCGCACCGTCAGCTTGTCAAGATCGCTGGTGATGTGGTCCGTCGCCCCGGTGTCAATATACCAATTGGTACCAACACCGTAGGAGGAGGTAGCAGCAGCAGCACTCTTCTCTTCGCCAGTGAAGGAAGCATCAAACCTCTTGTAGCACTTGACCACCGTATGGCCCAATTTGTCACACAGCTGACACTTGGGGTGATCTCCTCCTTGGTTGTTGGTGAAGCCACCACGGCCGCGGCCTTGGCCGCCGCGACCACGGTTCAGATTTTGGCCCTGGTTTGGCTGACCATGGCCGCGACCTCCTCCATTGCCGCCGCGAGAAGCAGAGTTGGTGGACGACTGAATGCCACCCTGTCGAAGTTCCAATCGCTGCTCAAAAGTAACAAGCTGTGAAAACAACTCACCGACTGAGATTGGCTCAGAACGTTGGGCGACTGCAGAGACAACCGGGTCAAAATCATCATCGAGCCCAGCCAGGATGTCGGAGACGATGTCGTCGTCGTCGAGCTTCTTTCCTGCCGAGGCCATGTCATCAGCAAGACCCCGCATCTTGGCCACGTACTCGGCAACCTTCAGATTGCCCTTCTTCGTGGCCGTCAGAGCCATGCGTGTGTTCATCACACGCGCACGGGAGTGAGATGCAAACATCCCACTTATGGCATCCCAAACCCCAACAGCAGTGGGAATTGAGACCACCTGGATGAGGACATCACGTGAGAGGGAGAGCAACAGGTAGCTGAGAACCTGCTGCTCTTGCGCCACCCACTCGGTATGCGCGGGATTGGTGACCCGCACATCCTTGTCGTCCTTCTTGGTGATGATGGTGGCCGGCGGCTCCTCCTTTGTGCCGTCGATGTATCCAGCCATCTGAGCTCCCCTGAGCGCAGCAAGAACTTGCGCCTTTCAGAGAGGATAGTTGCTGCGGGAGAGTTTCTCTGTGACCGCGTGCGCGAGAGAAGGAGCAGCGCCACCGGCTAGCGAGGATGAAGACGACGCTATAATCACGACGTCGAGGAAGCAGGCTCTGATACCATGAAAAGATTGGATTTAACGTGGAT
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| CDS seq | ATGGCTGGATACATCGACGGCACAAAGGAGGAGCCGCCGGCCACCATCATCACCAAGAAGGACGACAAGGATGTGCGGGTCACCAATCCCGCGCATACCGAGTGGGTGGCGCAAGAGCAGCAGGTTCTCAGCTACCTGTTGCTCTCCCTCTCACGTGATGTCCTCATCCAGGTGGTCTCAATTCCCACTGCTGTTGGGGTTTGGGATGCCATAAGTGGGATGTTTGCATCTCACTCCCGTGCGCGTGTGATGAACACACGCATGGCTCTGACGGCCACGAAGAAGGGCAATCTGAAGGTTGCCGAGTACGTGGCCAAGATGCGGGGTCTTGCTGATGACATGGCCTCGGCAGGAAAGAAGCTCGACGACGACGACATCGTCTCCGACATCCTGGCTGGGCTCGATGATGATTTTGACCCGGTTGTCTCTGCAGTCGCCCAACGTTCTGAGCCAATCTCAGTCGGTGAGTTGTTTTCACAGCTTGTTACTTTTGAGCAGCGATTGGAACTTCGACAGGGTGGCATTCAGTCGTCCACCAACTCTGCTTCTCGCGGCGGCAATGGAGGAGGTCGCGGCCATGGTCAGCCAAACCAGGGCCAAAATCTGAACCGTGGTCGCGGCGGCCAAGGCCGCGGCCGTGGTGGCTTCACCAACAACCAAGGAGGAGATCACCCCAAGTGTCAGCTGTGTGACAAATTGGGCCATACGGTGGTCAAGTGCTACAAGAGGTTTGATGCTTCCTTCACTGGCGAAGAGAAGAGTGCTGCTGCTGCTACCTCCTCCTACGGTGTTGGTACCAATTGGTATATTGACACCGGGGCGACGGACCACATCACCAGCGATCTTGACAAGCTGACGGTGCGGGAGAAGTACAATGGAGGTGATCAAGTTCATACTGCCAGTGGTTCAGGTATGAAGATTAATCAAATTGGTCAATCTATTGTTCGCACCCAACACCGTGATCTTATACTAAAAAATATTCTTTATGTTCCCGAAGCAAACAAAAGTTTAATCTCTGCTCATCGCCTTGCATTTGATAACCAAGCTTTCTTAGAGCTTTTCCCTCGTTATTTTTCTATCAAGGATCAGGTAACGAGGAAACTACTTCACCAAGGCAGATGTGAGCGAGGCCTTTATCCTCTGAAATCATTCCCAAATAAACAAGTTTTTGCAGCTATCAAGCTTTCTCCTTCGCAGTGGCATTGTCGCCTAGGCCACCCGTCCTCAGTCATTGTTCAACAAGTCTTGAGTCATAATAATTTACCTTGTGTTAGTGAGTCAAACAAGCATTCGGTTTGTGATGCTTGTCAGAAAGGGAAGAGTCATCAACTTCCTTATTCTAAGTCTTTGAGTCGTTCTAGTGCTCCTTTAGAGCTTATTCATTCAGATGTTTGGGGTCCTGCACCAACCTCGGTTGGGAAGAATAATTATTATGTGAGTTTTGTGGATGATTTCAGCAAATTTTCTTGGATATATCTCCTTAAACATAAATCCGATGTGTTTCAATGTTTCCATAATTTTCAGAATCCTGTAGAACGACTCTTTGATCGCAAGATATTAGCTATGCAAACTGATTGGGTGGTGAATATCACAAACTCAATTCCTTTTTTCAACGCATCGGTATTTCTCACCGTGTGTCATGTCCATATGCACATCAACAAAACGGGTCTGCCGAACGTAAGCACCATCATATTGTTGAAGTTGGGCTATCCCTTCTAG
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| Protein seq | MAGYIDGTKEEPPATIITKKDDKDVRVTNPAHTEWVAQEQQVLSYLLLSLSRDVLIQVVSIPTAVGVWDAISGMFASHSRARVMNTRMALTATKKGNLKVAEYVAKMRGLADDMASAGKKLDDDDIVSDILAGLDDDFDPVVSAVAQRSEPISVGELFSQLVTFEQRLELRQGGIQSSTNSASRGGNGGGRGHGQPNQGQNLNRGRGGQGRGRGGFTNNQGGDHPKCQLCDKLGHTVVKCYKRFDASFTGEEKSAAAATSSYGVGTNWYIDTGATDHITSDLDKLTVREKYNGGDQVHTASGSGMKINQIGQSIVRTQHRDLILKNILYVPEANKSLISAHRLAFDNQAFLELFPRYFSIKDQVTRKLLHQGRCERGLYPLKSFPNKQVFAAIKLSPSQWHCRLGHPSSVIVQQVLSHNNLPCVSESNKHSVCDACQKGKSHQLPYSKSLSRSSAPLELIHSDVWGPAPTSVGKNNYYVSFVDDFSKFSWIYLLKHKSDVFQCFHNFQNPVERLFDRKILAMQTDWVVNITNSIPFFNASVFLTVCHVHMHINKTGLPNVSTIILLKLGYPF |
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| Function | Retrovirus-related Pol polyprotein from transposon RE1 [UniProtKB/Swiss-Prot:Q94HW2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0671800 | OsNip_02t0671800-01 | Chr02 | 27297098 | 27300008 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTGGATACATCGACGGCACAAAGGAGGAGCCGCCGGCCACCATCATCACCAAGAAGGACGACAAGGATGTGCGGGTCACCAATCCCGCGCATACCGAGTGGGTGGCGCAAGAGCAGCAGGTTCTCAGCTACCTGTTGCTCTCCCTCTCACGTGATGTCCTCATCCAGGTGGTCTCAATTCCCACTGCTGTTGGGGTTTGGGATGCCATAAGTGGGATGTTTGCATCTCACTCCCGTGCGCGTGTGATGAACACACGCATGGCTCTGACGGCCACGAAGAAGGGCAATCTGAAGGTTGCCGAGTACGTGGCCAAGATGCGGGGTCTTGCTGATGACATGGCCTCGGCAGGAAAGAAGCTCGACGACGACGACATCGTCTCCGACATCCTGGCTGGGCTCGATGATGATTTTGACCCGGTTGTCTCTGCAGTCGCCCAACGTTCTGAGCCAATCTCAGTCGGTGAGTTGTTTTCACAGCTTGTTACTTTTGAGCAGCGATTGGAACTTCGACAGGGTGGCATTCAGTCGTCCACCAACTCTGCTTCTCGCGGCGGCAATGGAGGAGGTCGCGGCCATGGTCAGCCAAACCAGGGCCAAAATCTGAACCGTGGTCGCGGCGGCCAAGGCCGCGGCCGTGGTGGCTTCACCAACAACCAAGGAGGAGATCACCCCAAGTGTCAGCTGTGTGACAAATTGGGCCATACGGTGGTCAAGTGCTACAAGAGGTTTGATGCTTCCTTCACTGGCGAAGAGAAGAGTGCTGCTGCTGCTACCTCCTCCTACGGTGTTGGTACCAATTGGTATATTGACACCGGGGCGACGGACCACATCACCAGCGATCTTGACAAGCTGACGGTGCGGGAGAAGTACAATGGAGGTGATCAAGTTCATACTGCCAGTGGTTCAGGTATGAAGATTAATCAAATTGGTCAATCTATTGTTCGCACCCAACACCGTGATCTTATACTAAAAAATATTCTTTATGTTCCCGAAGCAAACAAAAGTTTAATCTCTGCTCATCGCCTTGCATTTGATAACCAAGCTTTCTTAGAGCTTTTCCCTCGTTATTTTTCTATCAAGGATCAGGTAACGAGGAAACTACTTCACCAAGGCAGATGTGAGCGAGGCCTTTATCCTCTGAAATCATTCCCAAATAAACAAGTTTTTGCAGCTATCAAGCTTTCTCCTTCGCAGTGGCATTGTCGCCTAGGCCACCCGTCCTCAGTCATTGTTCAACAAGTCTTGAGTCATAATAATTTACCTTGTGTTAGTGAGTCAAACAAGCATTCGGTTTGTGATGCTTGTCAGAAAGGGAAGAGTCATCAACTTCCTTATTCTAAGTCTTTGAGTCGTTCTAGTGCTCCTTTAGAGCTTATTCATTCAGATGTTTGGGGTCCTGCACCAACCTCGGTTGGGAAGAATAATTATTATGTGAGTTTTGTGGATGATTTCAGCAAATTTTCTTGGATATATCTCCTTAAACATAAATCCGATGTGTTTCAATGTTTCCATAATTTTCAGAATCCTGTAGAACGACTCTTTGATCGCAAGATATTAGCTATGCAAACTGATTGGGTGGTGAATATCACAAACTCAATTCCTTTTTTCAACGCATCGGTATTTCTCACCGTGTGTCATGTCCATATGCACATCAACAAAACGGGTCTGCCGAACGTAAGCACCATCATATTGTTGAAGTTGGGCTATCCCTTCTAG
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| Protein seq | MAGYIDGTKEEPPATIITKKDDKDVRVTNPAHTEWVAQEQQVLSYLLLSLSRDVLIQVVSIPTAVGVWDAISGMFASHSRARVMNTRMALTATKKGNLKVAEYVAKMRGLADDMASAGKKLDDDDIVSDILAGLDDDFDPVVSAVAQRSEPISVGELFSQLVTFEQRLELRQGGIQSSTNSASRGGNGGGRGHGQPNQGQNLNRGRGGQGRGRGGFTNNQGGDHPKCQLCDKLGHTVVKCYKRFDASFTGEEKSAAAATSSYGVGTNWYIDTGATDHITSDLDKLTVREKYNGGDQVHTASGSGMKINQIGQSIVRTQHRDLILKNILYVPEANKSLISAHRLAFDNQAFLELFPRYFSIKDQVTRKLLHQGRCERGLYPLKSFPNKQVFAAIKLSPSQWHCRLGHPSSVIVQQVLSHNNLPCVSESNKHSVCDACQKGKSHQLPYSKSLSRSSAPLELIHSDVWGPAPTSVGKNNYYVSFVDDFSKFSWIYLLKHKSDVFQCFHNFQNPVERLFDRKILAMQTDWVVNITNSIPFFNASVFLTVCHVHMHINKTGLPNVSTIILLKLGYPF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0671800 | OsNip_02t0671800-02 | Chr02 | 27298397 | 27300045 | - | IsoSeq | ||
| CDS seq | TCCACGTTAAATCCAATCTTTTCATGGTATCAGAGCCTGCTTCCTCGACGTCGTGATTATAGCGTCGTCTTCATCCTCGCTAGCCGGTGGCGCTGCTCCTTCTCTCGCGCACGCGGTCACAGAGAAACTCTCCCGCAGCAACTATCCTCTCTGAAAGGCGCAAGTTCTTGCTGCGCTCAGGGGAGCTCAGATGGCTGGATACATCGACGGCACAAAGGAGGAGCCGCCGGCCACCATCATCACCAAGAAGGACGACAAGGATGTGCGGGTCACCAATCCCGCGCATACCGAGTGGGTGGCGCAAGAGCAGCAGGTTCTCAGCTACCTGTTGCTCTCCCTCTC
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| Protein seq | STLNPIFSWYQSLLPRRRDYSVVFILASRWRCSFSRARGHRETLPQQLSSLKGASSCCAQGSSDGWIHRRHKGGAAGHHHHQEGRQGCAGHQSRAYRVGGARAAGSQLPVALPL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.167461 | 0.0 | 1.214137 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g45040 | RBH | 0.104787 | 0.0 | 0.201771 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0671800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0409800 | RBH | 0 | 0 | 0.0028725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0438700 | RBH | 0 | 0.0033935 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
