Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0656500 | OGI:02075040 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:26519337-26523355 | ||||||||
| Gene Symbol | OsDjA1 | ||||||||||
| DNA seq | CTCTCTCTCTCCCTCGCCGCGCCGCCGCCGAACACACCCCCCCCACCCCCCCTCCCCACACGCCTCCGCCTCCTCGCACCGAACCGCCTCGGCGCGAGCGCGAGGGAGAGAGCTCCTCTTCTCCTCCACGGCGGCTGCGCGGCGTCGTCCCGCTCCACCGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGGTGAGGAAGCCAGCCTTTGCCCTAGCTATGTAGCTCGTGTTTTCGTTGGGTTTCCTGTGCTTTTTTTTTTTTAATTTGTGGCCGCAAACGGTGGGATCCATCCAGATCTGTGATGTTTGTTCGTGGAGAGTGGTCTCGGTTGATCCCGTCTGATACGGGTTGTTTTGATCTGTAGTTGTTTATTACCCTGAGTTAATACTAGCAATAACAACTTGTTAATTTGGCGATTGGGATGAACCCTAATGGTTCTCGCTGAGTCCGCCCCTATGTAGTATTGCAATATGTATATCATTCGAGCTCTATTAGAAGATTGGTTCTTCTTATTGCAAGAATTGTGTGGTATATTTTTTCTTTGTTTGCAGGATATTAGTTTGTACTAATGCTACTCATTGTAGTTATTGCTTCATGATTTGTTGATCTGATTCCAAGTTTTACGTTTGTAGGAAGCCCTTTTTATCAGTCATGTACGGACGCATGCCAAAGAAGAGTAACAATACCAAGTATTATGAGGTGCTTGGTGTATCTAAGACAGCAACCCAGGATGAGCTGAAGAAAGCGTACCGTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGGTCTGGGGACAAACAGTTCTATATTTGTCTACTCTTGAACTGTTGGTTTGGTTTGGTTGACGTTTTACTTTTTATGGCTTGGTCAGTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGGAAATCTATGACCAATATGGCGAGGATGCACTCAAAGAAGGAATGGGAGGAGGCAGCAGCAGTGATTTCCATAGTCCCTTCGATTTATTTGAGCAAATTTTTCAGAATCGTGGTGGCTTTGGGGGTAATAAAATTATGAAAAATGCTTTACTTTGATCCTTTATCCTTCTATATTTTAGAATGAAATATGCACCTATTTACTGTTTTGTGGTTGAAAGTAGGTAGAGGACACAGACAAAAGCGTGGCGAAGATGTGGTACATACTATGAAGGTTTCTTTAGAAGACCTGTATAATGGTACTACCAAAAAACTGTCTTTGTCACGGAATGCTCTGTGCACAAAGTGCAAGGGGTAAGTATCTTGCACATTCTCGAGTGGTTCTTTCATACTGAAAGGATTGTTATTTGTTATTGTCTTGAATTATGAATATATACAATTTATAATAATAATAACTATTGACTGCACAATTTATAATATTAATAACTATATTAACTGCCCATGATAACTTGGGGGGTTTACTTTCTTTATCTCTAAACTTAAGTTTGTCTTCAAATTATTTTCTGGATCATTTGAGTGTTAAAAAGTCCCTCTGAATCTTATTTCTATATAACATTTATTTCTGTTTTGTTTATTTTTATCACATAGTGAAGCACTTTTGATTAAATACGTGTAGCTGGTAATGAACTACGAACTTAATTGGTTCATTTGCACAAATGCTATGTTTAATCTATGGGAAGATGCAATGTAGTTTACGACTTGAAAAAGTCTGTGGCTGTATCTGCAACAGGGCTAACAGTAACTGCGTAACTTGTCTATCTGTTTTTTGTGTTATAGGCATTTAACATGATTTTTTTTCCGAAAGTAAAAAAATGAAAAATATTAAGAAGCAACATAGTATATCAAATTAATAGTGAATACATGGGCACCCAAGTTAAACAAGGAAGGAAGTGAGCCTAGCTCACTTGGATTTGAGCTGAATATATACATATGTGGTAGATGTTAAGACTTGTTTTTGTCCAGCTATGCTGCTGTCAGAAGCTGTTCTGCCGGTTCTGACTTCTGAGTTTTGATGGATGTGTTTTAAGAGAAATATGCATGGATTTGGTCCTCGTATAAGCGCACTTCACACACAAGTAATATTTTGTAGTACAGCAGGCTCAAACAAGTAATTATTGTCATGTAACACAACACTTGCTACCCACTTCCCCTCTTAAATTCAAGGTGAAAAAACTATTGTTGTTCTGAAAGTGGGGGTGAAACTCTAGTAACCTAGATGACGATCTGTGCAAATGTACACTAAGGCCTTCTCTTTTCTGAACAACAAAACCAGTTTATCTTTTTTTGTATTATTACTACATCTGTTTCTGTACTTGGCTACTTGCTGTATGTAAGAGTCATACTGCTACCTCTGCATAGCATCTCCGAATTAGGTTACAGGGTTGGATTTTGCCCCAACCATGCAGATGTCCATTTATTGCCCGAACGTTCAGCTGAATTTGATGGTTCTCTACAAATGAAACTTGCAGTTTTGACTCTTGTACTTGTAGTGCTCAATTGTTACTCAGTTTAATGCATTCTTTTTTTTTTCTAGTTTTGTTATATTGGTCTCACTGTTGCCTTACGTTTTTGTACCTTCAGTAAAGGATCCAAGAGTGGGGCAGCAGCAACTTGCCATGGTTGTCATGGTGCAGGAATGAGAACAATAACAAGACAAATTGGGCTTGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGGTATGCCATTGTTGTATCTTCATTAGAAGACATCTTCTGGTTGAGTTTGCCTAATGATTAATTTGTCCAGGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGTAGTCCAGCAGAAGAAGGTCTTGGAGGTTCATGTTGAGAAGGGAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTGTGAGTCTTATTTACATAAGTATCAGGCCGTCATGTGCGAAATGTGGCAACTCGCATCTTGATGTGTGTGTTCATAATATGTTGGAGCTCCCATCTAACATTGCAAATTCATGCTTTTGCAGCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACCCAAAATTTAAGAGGAAGTTTGATGACCTCTTTACTGAGCACACAATCTCCCTGACCGAGGCTCTGTGTGGCTTCCAGTTTGTTCTAACCCATCTTGATGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGGTATGCTTTCCTCTTTTGACTCTTTTACCCATTGCTGTCTGCCTTTATAGTTTCTTGTTGGACATGTTGATAGATGATTTTCTTGGATAGGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTTTCATGAAAGGTCGTCTTTTTGTTGAATTCAACGTGGAGTTTCCTGAGCCTGGTGCACTCACTCCTGGCCAATGCCGATCGCTTGAGAAGATTTTGCCACCACGACCCAGGAATCAATTGTCAGACATGGAGCTAGATCAATGTGAGGAGACCACCATGCATGATGTCAACATAGAAGAGGAGATGAGGCGCAGGCAGCAGCACAGGCGGCAGGAAGCATATGATGAAGACGACGACGAGGATGCTGGAGCTGGACCAAGGGTACAGTGTGCCCAGCAGTAAGAACAATTCGATGCCATTCGGACTAGACGATTTAGCGTCTCTTATCATCCAAAGACCGCGGTAGCTACTGAGTTCATTCTATTCTTTTTTTTAATGTACCCCCACCTAAAGTAGCTGATGCATGTTATGATTTCTCTTTTGTGGGAAATGTTATGCTACCATTTTTGTTGTCTTAAGATTAAGGAGCTTGCTATTAGTCATAATGATGTTGCGGCCTCACTACAATTATTACAGCCTGCCGTATTATATACCAAAATGAGCTAATCCTCGACAATAATTCTTACAGACAGCGGACCGAATCAGTTGTATTATACTATTATGCCTGTGGTTCTGT
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| CDS seq | ATGTACGGACGCATGCCAAAGAAGAGTAACAATACCAAGTATTATGAGGTGCTTGGTGTATCTAAGACAGCAACCCAGGATGAGCTGAAGAAAGCGTACCGTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGGAAATCTATGACCAATATGGCGAGGATGCACTCAAAGAAGGAATGGGAGGAGGCAGCAGCAGTGATTTCCATAGTCCCTTCGATTTATTTGAGCAAATTTTTCAGAATCGTGGTGGCTTTGGGGGTAGAGGACACAGACAAAAGCGTGGCGAAGATGTGGTACATACTATGAAGGTTTCTTTAGAAGACCTGTATAATGGTACTACCAAAAAACTGTCTTTGTCACGGAATGCTCTGTGCACAAAGTGCAAGGGTAAAGGATCCAAGAGTGGGGCAGCAGCAACTTGCCATGGTTGTCATGGTGCAGGAATGAGAACAATAACAAGACAAATTGGGCTTGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGTAGTCCAGCAGAAGAAGGTCTTGGAGGTTCATGTTGAGAAGGGAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACCCAAAATTTAAGAGGAAGTTTGATGACCTCTTTACTGAGCACACAATCTCCCTGACCGAGGCTCTGTGTGGCTTCCAGTTTGTTCTAACCCATCTTGATGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTTTCATGAAAGGTCGTCTTTTTGTTGAATTCAACGTGGAGTTTCCTGAGCCTGGTGCACTCACTCCTGGCCAATGCCGATCGCTTGAGAAGATTTTGCCACCACGACCCAGGAATCAATTGTCAGACATGGAGCTAGATCAATGTGAGGAGACCACCATGCATGATGTCAACATAGAAGAGGAGATGAGGCGCAGGCAGCAGCACAGGCGGCAGGAAGCATATGATGAAGACGACGACGAGGATGCTGGAGCTGGACCAAGGGTACAGTGTGCCCAGCAGTAA
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| Protein seq | MYGRMPKKSNNTKYYEVLGVSKTATQDELKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLNDPEKREIYDQYGEDALKEGMGGGSSSDFHSPFDLFEQIFQNRGGFGGRGHRQKRGEDVVHTMKVSLEDLYNGTTKKLSLSRNALCTKCKGKGSKSGAAATCHGCHGAGMRTITRQIGLGMIQQMNTVCPECRGSGEMISDKDKCPSCKGNKVVQQKKVLEVHVEKGMQHGQKIVFQGEADEAPDTVTGDIVFVLQLKDHPKFKRKFDDLFTEHTISLTEALCGFQFVLTHLDGRQLLIKSNPGEVIKPGQHKAINDEGMPQHGRPFMKGRLFVEFNVEFPEPGALTPGQCRSLEKILPPRPRNQLSDMELDQCEETTMHDVNIEEEMRRRQQHRRQEAYDEDDDEDAGAGPRVQCAQQ |
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| Function | Chaperone protein dnaJ A6 [UniProtKB/Swiss-Prot:Q0JB88] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0656500 | OsNip_02t0656500-01 | Chr02 | 26519337 | 26523355 | + | RAP2018-11-26 | ||
| CDS seq | ATGTACGGACGCATGCCAAAGAAGAGTAACAATACCAAGTATTATGAGGTGCTTGGTGTATCTAAGACAGCAACCCAGGATGAGCTGAAGAAAGCGTACCGTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGGAAATCTATGACCAATATGGCGAGGATGCACTCAAAGAAGGAATGGGAGGAGGCAGCAGCAGTGATTTCCATAGTCCCTTCGATTTATTTGAGCAAATTTTTCAGAATCGTGGTGGCTTTGGGGGTAGAGGACACAGACAAAAGCGTGGCGAAGATGTGGTACATACTATGAAGGTTTCTTTAGAAGACCTGTATAATGGTACTACCAAAAAACTGTCTTTGTCACGGAATGCTCTGTGCACAAAGTGCAAGGGTAAAGGATCCAAGAGTGGGGCAGCAGCAACTTGCCATGGTTGTCATGGTGCAGGAATGAGAACAATAACAAGACAAATTGGGCTTGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGTAGTCCAGCAGAAGAAGGTCTTGGAGGTTCATGTTGAGAAGGGAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACCCAAAATTTAAGAGGAAGTTTGATGACCTCTTTACTGAGCACACAATCTCCCTGACCGAGGCTCTGTGTGGCTTCCAGTTTGTTCTAACCCATCTTGATGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTTTCATGAAAGGTCGTCTTTTTGTTGAATTCAACGTGGAGTTTCCTGAGCCTGGTGCACTCACTCCTGGCCAATGCCGATCGCTTGAGAAGATTTTGCCACCACGACCCAGGAATCAATTGTCAGACATGGAGCTAGATCAATGTGAGGAGACCACCATGCATGATGTCAACATAGAAGAGGAGATGAGGCGCAGGCAGCAGCACAGGCGGCAGGAAGCATATGATGAAGACGACGACGAGGATGCTGGAGCTGGACCAAGGGTACAGTGTGCCCAGCAGTAA
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| Protein seq | MYGRMPKKSNNTKYYEVLGVSKTATQDELKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLNDPEKREIYDQYGEDALKEGMGGGSSSDFHSPFDLFEQIFQNRGGFGGRGHRQKRGEDVVHTMKVSLEDLYNGTTKKLSLSRNALCTKCKGKGSKSGAAATCHGCHGAGMRTITRQIGLGMIQQMNTVCPECRGSGEMISDKDKCPSCKGNKVVQQKKVLEVHVEKGMQHGQKIVFQGEADEAPDTVTGDIVFVLQLKDHPKFKRKFDDLFTEHTISLTEALCGFQFVLTHLDGRQLLIKSNPGEVIKPGQHKAINDEGMPQHGRPFMKGRLFVEFNVEFPEPGALTPGQCRSLEKILPPRPRNQLSDMELDQCEETTMHDVNIEEEMRRRQQHRRQEAYDEDDDEDAGAGPRVQCAQQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0656500 | OsNip_02t0656500-02 | Chr02 | 26520284 | 26523305 | + | RAP2018-11-26 | ||
| CDS seq | GAAAAGAGGGAAATCTATGACCAATATGGCGAGGATGCACTCAAAGAAGGAATGGGAGGAGGCAGCAGCAGTGATTTCCATAGTCCCTTCGATTTATTTGAGCAAATTTTTCAGAATCGTGGTGGCTTTGGGGGTAGAGGACACAGACAAAAGCGTGGCGAAGATGTGGTACATACTATGAAGGTTTCTTTAGAAGACCTGTATAATGGTACTACCAAAAAACTGTCTTTGTCACGGAATGCTCTGTGCACAAAGTGCAAGGGTAAAGGATCCAAGAGTGGGGCAGCAGCAACTTGCCATGGTTGTCATGGTGCAGGAATGAGAACAATAACAAGACAAATTGGGCTTGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGTAGTCCAGCAGAAGAAGGTCTTGGAGGTTCATGTTGAGAAGGGAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACCCAAAATTTAAGAGGAAGTTTGATGACCTCTTTACTGAGCACACAATCTCCCTGACCGAGGCTCTGTGTGGCTTCCAGTTTGTTCTAACCCATCTTGATGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTTTCATGAAAGGTCGTCTTTTTGTTGAATTCAACGTGGAGTTTCCTGAGCCTGGTGCACTCACTCCTGGCCAATGCCGATCGCTTGAGAAGATTTTGCCACCACGACCCAGGAATCAATTGTCAGACATGGAGCTAGATCAATGTGAGGAGACCACCATGCATGATGTCAACATAGAAGAGGAGATGAGGCGCAGGCAGCAGCACAGGCGGCAGGAAGCATATGATGAAGACGACGACGAGGATGCTGGAGCTGGACCAAGGGTACAGTGTGCCCAGCAGTAA
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| Protein seq | EKREIYDQYGEDALKEGMGGGSSSDFHSPFDLFEQIFQNRGGFGGRGHRQKRGEDVVHTMKVSLEDLYNGTTKKLSLSRNALCTKCKGKGSKSGAAATCHGCHGAGMRTITRQIGLGMIQQMNTVCPECRGSGEMISDKDKCPSCKGNKVVQQKKVLEVHVEKGMQHGQKIVFQGEADEAPDTVTGDIVFVLQLKDHPKFKRKFDDLFTEHTISLTEALCGFQFVLTHLDGRQLLIKSNPGEVIKPGQHKAINDEGMPQHGRPFMKGRLFVEFNVEFPEPGALTPGQCRSLEKILPPRPRNQLSDMELDQCEETTMHDVNIEEEMRRRQQHRRQEAYDEDDDEDAGAGPRVQCAQQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.876476 | 5.870503 | 41.269306 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0549600 | RBH | 21.424591 | 17.743742 | 120.471420 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g43930 | RBH | 2.569150 | 2.837484 | 8.266479 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0656500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0027600 | RBH | 3.530809 | 45.615433 | 60.455288 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0027700 | RBH | 1.088835 | 14.832015 | 14.614264 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0027540 | RBH | 7.956701 | 43.029247 | 68.339386 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0027150 | RBH | 1.293068 | 2.708598 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0027270 | RBH | 23.318720 | 100.278893 | 155.418930 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0431400 | RBH | 41.005119 | 158.8952485 | 319.4676815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0027080 | RBH | 1.291569 | 5.493626 | 9.408733 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0459100 | RBH | 61.77091 | 253.7687225 | 298.247345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0027410 | RBH | 0.708172 | 1.866084 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0027090 | RBH | 1.757632 | 95.235207 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0027460 | RBH | 25.832546 | 189.895584 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0027290 | RBH | 3.426581 | 6.702007 | 15.551245 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0026990 | RBH | 1.558203 | 46.056595 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G027580 | RBH | 5.695326 | 41.550255 | 52.860977 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0027320 | RBH | 4.305673 | 84.150909 | 60.705082 |
