Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0643000 | OGI:02073190 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:25828426-25831324 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CACAAGGATCCAGCATATACATATCGCAAGCCATAATGTTAAGGGAAGTGTCATATTTACAGGTGTCAAAAGATGAATACAATTGACCAAAAAAAACTTATACTCAAACATGCTAAATGGACAGACGACTTATTGACTGGATGCAGTAGCTACTGATTGGAATTTGATAGTCAGAAATTACAAGAGGAATCAGGTCCTAAGATAAGACGATCATGAGTTGGTACAAATGGCTAACACAACAGACAAGGCCCACGACTATCAACTCTTTCACAGAAAAGTGGAACAAGATATATGATCACAGACGCTCATCTCTTAATGAGAAAACCAAGCAGGATTCCCAGAATAGCAATAACCAGCACAAAAACTAGTGAGAAACCACCGTGCTGACTCCCCATTTGCCTCCTTAGAAGATCCTGTTCAATTCCAATAGAAGATAAATGAAACTACGTGAGTGTTGCAGTTTAGATTCAGATTTCATTGATGCACAAAGCCATAATAGACAAACAAGATGATATTTGTAGATAACGAAATACATCTGTACTTGTAGAAATTAGTGGGTTGCAAATAAACTTGACAAAAAAGTAAAGAAAAACATAAAGCGCATGTAAACTGGTTATTCTGTCTATCTAACTCAAAGCTAAAAAACGTATTAGTGTTTTTTTCGGGTGGACTGGTCACTGCTGGCCTCAGTAAAAGAACAGGGAATGAGTAAATCATGTGGTGATTATTTATTGGAGATGCAAATTTATCGACATAGCTGTTGCTTAAACCTAACTAGCTTATGCGGGGGGATAAATTAATCTATTTCTTACTGCCAAAGTAAAAAAATATATTGGGTCACTAAATGTTTGCATAATCAAGCTAACCAGTTCTTCTCGAAGCTTCATGTTCTGTTGAATGGCAGAACTCTTCTCCTCCTTCAACTTTGAAATCAAGGCCAATGGCTGCACATAGTTGTGAAAGAGATCAGCATATTGTGCTTTGGCATCATTGTCAGGTAGCATAGGAAGTCGGAATCCTCTATAAGAAGACCTCTCAGTTCCTCAGTTTGTAACAAAAGTAAAATGCTAACAAAGTCAAGATATGCTAGAGGATGAAGCATCCCTCAGATTAAGTTATCATTGGCATCTAAATATGTTGAGATGAAGAGCCATGATTTATGCAAGGAGAACATTAATCAAAAGATCATACATGTAGAGTGGAGCAAGAAGATTGACAAGCAAAAATAAATTTATAGTAGTATGTGAAGTTAGGATTTAGTGATAACATAGCATTGTCAAATTTAACAAGAGAACATTGCAACACATATATCAAGAAAAGTACATAGTTTTCCTCAGGGAAAAAACAAAGTGCATAGCATAAAACAGCACACACATAGTTCTGTTGGATCAGAGTTCTAAAACAAGTGTCATGCAGAGGACTAGGAAATAAGAAGAGCACAGCAACACTGTAAAATATAATTAAACAACTTCTGAAGCAATGCTCTTGGATAAAATCACACATAGTATCTCTAAATTATGACACCTATCACAAGAAAACATAGATGTTTCCCATCTGAAGATGCATACCTCAGAGGTTACTGTTTCTGATTCTCTAGATCCTTTTGTTGCCTGCAAAGAGAAGTTCGCAATTTGTTTCAGATGATAAGGCAATGAAGGATCAATGCACTAACAAGAAACGACGGCGGATAGCTGTTAGACATGAAATTGATGAAAGCCTTACTTCTTGATAACTCAAGCTTCCTAGACCTTCCTCAGACCCGCCATTGAGAGATGTCGGGTGAGGTTGAGTATAAACAACCTTTAACTTCACCTCATCCACCACATTACCTGATTCTTTCGTAAACTACATAGGATCACTCATTAGGACACAAAGAAAGCAGCCAACATAAGCTACAAATGCAGGACACACTAGAAACTAGAAAGTCGGTTGGTTACCATGTCTCCGGTGATATCCTTCGGTGTGAGCTCTTGTGTCACTATGGCACTCTGCACAAGGAATTTGTCCTTGCATTGCATGTCCGGTGGCGCCTCCCGCTGAGCTTGCATTGTTACTAGATTTGATAATCAATTGATAACTAAATTCTTAGCATAAAAGGCAGTCATTCAGAATAAGATAATACTGACGCAATTCATCAAATTACCAAGAACATTGGATGTGGACTGGGGAGCCACAATGCCGTTATTTGGACGGACGCAGTACTTCTTTGGACTAGTTGTCTTAACCTGGAGAAACGATGTTGAATTAATTTAGTTACTTATTACTGCAATGCATATTTCCTCGGAATTAGAGGCCAAAAAGATTTTATTAATACCTTAAACGTGACATATTCATCTGTCTTGTTTGTTAGGTGCAGAGAACACGAGATTTGCTTCTTTAATTCGACTGCATGATTAAAAAAAGGATGCGAAAGGATGAATATTCTGAACAAGACAATATTATCATCACATATTAAAGAATTACCAAAATTTGCACAAAAGAATATGCTTAAAACAAAGGCAAATCGGACTATCGGTGAAGTGAACAATCAATATTAGCTCAAAAAAGAAGGAAAAATTCCCCCTGAGAACAACCCTGAAATTTCTTCATACATAAATTTCTCGAATGAGGCCGCATTAAAATACACCCGGAAATCCATCGGAACCACCGAATGAACTGCAAAACTCCCTTCAAAAAACCCCCAAAAAGAAATTCTCGGGACAAGAAAACGCACAGGGGAAGATGAGCTCCGGGGGATCGATCCCGAGCAGCTCCCTGGAGTCGGAGCTCATCGCCGGCGAATACTCCCGAGGATCAAACGGGAAGCGATCCGCTCCGACGGGCGCCCCAGAGGCAAGGCCTCCAAAGATCGAATCTTTTTTCGCCTCCTGCATCCGACTATTCTCCAGCAAAATATTAT
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| CDS seq | ATGCAGGAGGCGAAAAAAGATTCGATCTTTGGAGGCCTTGCCTCTGGGGCGCCCGTCGGAGCGGATCGCTTCCCGTTTGATCCTCGGGAGTATTCGCCGGCGATGAGCTCCGACTCCAGGGAGCTGCTCGGGATCGATCCCCCGGAGCTCATCTTCCCCTTCGAATTAAAGAAGCAAATCTCGTGTTCTCTGCACCTAACAAACAAGACAGATGAATATGTCACGTTTAAGGTTAAGACAACTAGTCCAAAGAAGTACTGCGTCCGTCCAAATAACGGCATTGTGGCTCCCCAGTCCACATCCAATGTTCTTGTAACAATGCAAGCTCAGCGGGAGGCGCCACCGGACATGCAATGCAAGGACAAATTCCTTGTGCAGAGTGCCATAGTGACACAAGAGCTCACACCGAAGGATATCACCGGAGACATGTTTACGAAAGAATCAGGTAATGTGGTGGATGAGGTGAAGTTAAAGGTTGTTTATACTCAACCTCACCCGACATCTCTCAATGGCGGGTCTGAGGAAGGTCTAGGAAGCTTGAGTTATCAAGAAGCAACAAAAGGATCTAGAGAATCAGAAACAGTAACCTCTGAGCCATTGGCCTTGATTTCAAAGTTGAAGGAGGAGAAGAGTTCTGCCATTCAACAGAACATGAAGCTTCGAGAAGAACTGGATCTTCTAAGGAGGCAAATGGGGAGTCAGCACGGTGGTTTCTCACTAGTTTTTGTGCTGGTTATTGCTATTCTGGGAATCCTGCTTGGTTTTCTCATTAAGAGATGA
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| Protein seq | MQEAKKDSIFGGLASGAPVGADRFPFDPREYSPAMSSDSRELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQSTSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLKVVYTQPHPTSLNGGSEEGLGSLSYQEATKGSRESETVTSEPLALISKLKEEKSSAIQQNMKLREELDLLRRQMGSQHGGFSLVFVLVIAILGILLGFLIKR |
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| Function | Vesicle-associated protein 1-2 [UniProtKB/Swiss-Prot:Q9SHC8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0643000 | OsNip_02t0643000-01 | Chr02 | 25828426 | 25831324 | - | RAP2018-11-26 | ||
| CDS seq | ATGCAGGAGGCGAAAAAAGATTCGATCTTTGGAGGCCTTGCCTCTGGGGCGCCCGTCGGAGCGGATCGCTTCCCGTTTGATCCTCGGGAGTATTCGCCGGCGATGAGCTCCGACTCCAGGGAGCTGCTCGGGATCGATCCCCCGGAGCTCATCTTCCCCTTCGAATTAAAGAAGCAAATCTCGTGTTCTCTGCACCTAACAAACAAGACAGATGAATATGTCACGTTTAAGGTTAAGACAACTAGTCCAAAGAAGTACTGCGTCCGTCCAAATAACGGCATTGTGGCTCCCCAGTCCACATCCAATGTTCTTGTAACAATGCAAGCTCAGCGGGAGGCGCCACCGGACATGCAATGCAAGGACAAATTCCTTGTGCAGAGTGCCATAGTGACACAAGAGCTCACACCGAAGGATATCACCGGAGACATGTTTACGAAAGAATCAGGTAATGTGGTGGATGAGGTGAAGTTAAAGGTTGTTTATACTCAACCTCACCCGACATCTCTCAATGGCGGGTCTGAGGAAGGTCTAGGAAGCTTGAGTTATCAAGAAGCAACAAAAGGATCTAGAGAATCAGAAACAGTAACCTCTGAGCCATTGGCCTTGATTTCAAAGTTGAAGGAGGAGAAGAGTTCTGCCATTCAACAGAACATGAAGCTTCGAGAAGAACTGGATCTTCTAAGGAGGCAAATGGGGAGTCAGCACGGTGGTTTCTCACTAGTTTTTGTGCTGGTTATTGCTATTCTGGGAATCCTGCTTGGTTTTCTCATTAAGAGATGA
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| Protein seq | MQEAKKDSIFGGLASGAPVGADRFPFDPREYSPAMSSDSRELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQSTSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLKVVYTQPHPTSLNGGSEEGLGSLSYQEATKGSRESETVTSEPLALISKLKEEKSSAIQQNMKLREELDLLRRQMGSQHGGFSLVFVLVIAILGILLGFLIKR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.023604 | 0.219390 | 11.425800 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0534400 | RBH | 1.043208 | 0.653851 | 5.199940 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g42940 | RBH | 1.021066 | 0.110099 | 2.255363 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0643000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0026780 | RBH | 1.086978 | 12.363807 | 11.837917 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0026890 | RBH | 0.254948 | 1.424379 | 4.975707 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0026760 | RBH | 0.0 | 3.629018 | 7.284301 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0026340 | RBH | 0.049185 | 0.119325 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0026440 | RBH | 8.864401 | 4.609186 | 42.904728 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0420500 | RBH | 5.8812155 | 11.0515665 | 25.3227015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0026260 | RBH | 0.144388 | 0.880519 | 5.631449 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0448500 | RBH | 22.0502475 | 15.7177445 | 13.701835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0026610 | RBH | 0.568588 | 0.225378 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0026270 | RBH | 0.680627 | 2.034369 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0026650 | RBH | 7.729457 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0026450 | RBH | 0.497093 | 0.322169 | 3.795985 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0026140 | RBH | 0.278458 | 3.406585 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G026760 | RBH | 0.526148 | 1.798034 | 4.725244 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0026490 | RBH | 0.320248 | 3.995671 | 16.592621 |
