Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0633200 | OGI:02072140 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:25392975-25394561 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTTCTGCACTCGCCGCCGCCTCCGCAACGAAAATGGCAGCGCTCGCCTCCCTCCTCCTACTCCGCCGCCGCGGCGGGAGCCACGCCGCCGACGCTCTCCTCCGCGCGCTCACTACCGCCGCTGGAGAGCAGCCACTCACGGCGTCGGCGGCCAAGACCCGCCTCCGCCGGGAGCACGACCCCGACCGCGTCGTCTCCCTCTTCGAGGCCATCGACGACGCCTCCCTCTCGGCCTCCTCCACCCGCCACGCGCTCTCCCTCGCCGCACGCAGGCTCTCCCGCTCCCGCCGCTTCGCCGACGCCGAGGCCCTCCTCTCCTCCCACATCCCGGCCTCCCCCACCGAGCCGCAGCTCGCCGCTGTCCTCTGCTCCTACGCCGCCGCGTCCCTCCCCGAGAAGGCTCTCGCCGCCTTCCGCTCCGCCGCGCCGTCCCTCCCGTCCCCGATCTCCCCGCTCCCCTTCAACGCCGTCCTCTCCGTGTTCCTCCGGTGCCGCCGCCACCGCCGCGTCCCGGTCCTCTTCGACGAGCTCTCCAAGGAGTTCTCCATCACACCTGACGCCTCCTCCTACGGCATCCTGGTCAAGGCATACTGCATGCTGAGCAAAGACGCCAAGGCACACGAGGTGTTAGATCAAATGCGTGGGCAGGGTTTCACGCCGACCAATAGTATCTACACCACAATGATCGATTCCATGTATAAGCAGAAGAAGATGGAGCAGGCAGAGCGCTTGTGGAAGCAGATGTTGGAGAGCGGACGCAAGCCTGACCAAGCTGTATATAATACAAAGATCATGCACCATAGCCTTCACGGCAAGACGGAAGATGTGCTTGAGGTGATAGCAGAAATGGAGGAAGCTGGAGTGAAGCCGGATACCATCACTTACAATTTCCTCATGACTAGCTACTGCAAGCATGGTAAGATGGAGACTGCCAAGGAGCTGTACAGATCACTAGGCGAGAAGGGGTGCTCAGCAAACGCTGCCACGTACAAGCATATGATGGCACAGCTGTGTGCCCATGGAGATTTGGACGGTGCATTGGTGATCTTCAAGGAAAGCTATAGGAGCAACAAGGTGCCAGATTTTAGGACAATGAGTGGATTGGTTGAGGGATTGACAAAGGCTGGCAGGGTGGCTGAGGCAAAGAATATTGTTGCCAAGATGAAGAAGAAGTTCCCAGAGCAATTGCTGTCAGGGTGGATGAAACTCGAGAAGGAGCTTGGGTTGAACTCAGATAGCGGAGATGCAGGTACTCGGGCAGAATGTATATCTGAAGAAACTCCTTCTGAGGCCGAGGCTGCTATGCCAAAGACACTTGAGCTGGAAGATCCTTCTTCTGATGAAACAGAATGTATGGCAGAGGCGTCCACTAGTGAGGAAATGCCACGGGATTCTGCTTAATCAGATGTTATTTATGTATTTCAAGTTTAATTTGGTTAGGATGTTTTTACATTGTGCATTCTCTACAAAGGAAGAATTTCTAATGCTCCCAAGTACAGAGGTAAACATTAGTTTCTAGATGTGGACTCCTGAGCCACTAAGAGTTATATTGGGCTGACAATGCTTATAATTTCGTTGTTATGGATTT
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| CDS seq | ATGGCAGCGCTCGCCTCCCTCCTCCTACTCCGCCGCCGCGGCGGGAGCCACGCCGCCGACGCTCTCCTCCGCGCGCTCACTACCGCCGCTGGAGAGCAGCCACTCACGGCGTCGGCGGCCAAGACCCGCCTCCGCCGGGAGCACGACCCCGACCGCGTCGTCTCCCTCTTCGAGGCCATCGACGACGCCTCCCTCTCGGCCTCCTCCACCCGCCACGCGCTCTCCCTCGCCGCACGCAGGCTCTCCCGCTCCCGCCGCTTCGCCGACGCCGAGGCCCTCCTCTCCTCCCACATCCCGGCCTCCCCCACCGAGCCGCAGCTCGCCGCTGTCCTCTGCTCCTACGCCGCCGCGTCCCTCCCCGAGAAGGCTCTCGCCGCCTTCCGCTCCGCCGCGCCGTCCCTCCCGTCCCCGATCTCCCCGCTCCCCTTCAACGCCGTCCTCTCCGTGTTCCTCCGGTGCCGCCGCCACCGCCGCGTCCCGGTCCTCTTCGACGAGCTCTCCAAGGAGTTCTCCATCACACCTGACGCCTCCTCCTACGGCATCCTGGTCAAGGCATACTGCATGCTGAGCAAAGACGCCAAGGCACACGAGGTGTTAGATCAAATGCGTGGGCAGGGTTTCACGCCGACCAATAGTATCTACACCACAATGATCGATTCCATGTATAAGCAGAAGAAGATGGAGCAGGCAGAGCGCTTGTGGAAGCAGATGTTGGAGAGCGGACGCAAGCCTGACCAAGCTGTATATAATACAAAGATCATGCACCATAGCCTTCACGGCAAGACGGAAGATGTGCTTGAGGTGATAGCAGAAATGGAGGAAGCTGGAGTGAAGCCGGATACCATCACTTACAATTTCCTCATGACTAGCTACTGCAAGCATGGTAAGATGGAGACTGCCAAGGAGCTGTACAGATCACTAGGCGAGAAGGGGTGCTCAGCAAACGCTGCCACGTACAAGCATATGATGGCACAGCTGTGTGCCCATGGAGATTTGGACGGTGCATTGGTGATCTTCAAGGAAAGCTATAGGAGCAACAAGGTGCCAGATTTTAGGACAATGAGTGGATTGGTTGAGGGATTGACAAAGGCTGGCAGGGTGGCTGAGGCAAAGAATATTGTTGCCAAGATGAAGAAGAAGTTCCCAGAGCAATTGCTGTCAGGGTGGATGAAACTCGAGAAGGAGCTTGGGTTGAACTCAGATAGCGGAGATGCAGGTACTCGGGCAGAATGTATATCTGAAGAAACTCCTTCTGAGGCCGAGGCTGCTATGCCAAAGACACTTGAGCTGGAAGATCCTTCTTCTGATGAAACAGAATGTATGGCAGAGGCGTCCACTAGTGAGGAAATGCCACGGGATTCTGCTTAA
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| Protein seq | MAALASLLLLRRRGGSHAADALLRALTTAAGEQPLTASAAKTRLRREHDPDRVVSLFEAIDDASLSASSTRHALSLAARRLSRSRRFADAEALLSSHIPASPTEPQLAAVLCSYAAASLPEKALAAFRSAAPSLPSPISPLPFNAVLSVFLRCRRHRRVPVLFDELSKEFSITPDASSYGILVKAYCMLSKDAKAHEVLDQMRGQGFTPTNSIYTTMIDSMYKQKKMEQAERLWKQMLESGRKPDQAVYNTKIMHHSLHGKTEDVLEVIAEMEEAGVKPDTITYNFLMTSYCKHGKMETAKELYRSLGEKGCSANAATYKHMMAQLCAHGDLDGALVIFKESYRSNKVPDFRTMSGLVEGLTKAGRVAEAKNIVAKMKKKFPEQLLSGWMKLEKELGLNSDSGDAGTRAECISEETPSEAEAAMPKTLELEDPSSDETECMAEASTSEEMPRDSA |
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| Function | Pentatricopeptide repeat-containing protein At4g36680, mitochondrial [UniProtKB/Swiss-Prot:Q9M065] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0633200 | OsNip_02t0633200-01 | Chr02 | 25392975 | 25394561 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCAGCGCTCGCCTCCCTCCTCCTACTCCGCCGCCGCGGCGGGAGCCACGCCGCCGACGCTCTCCTCCGCGCGCTCACTACCGCCGCTGGAGAGCAGCCACTCACGGCGTCGGCGGCCAAGACCCGCCTCCGCCGGGAGCACGACCCCGACCGCGTCGTCTCCCTCTTCGAGGCCATCGACGACGCCTCCCTCTCGGCCTCCTCCACCCGCCACGCGCTCTCCCTCGCCGCACGCAGGCTCTCCCGCTCCCGCCGCTTCGCCGACGCCGAGGCCCTCCTCTCCTCCCACATCCCGGCCTCCCCCACCGAGCCGCAGCTCGCCGCTGTCCTCTGCTCCTACGCCGCCGCGTCCCTCCCCGAGAAGGCTCTCGCCGCCTTCCGCTCCGCCGCGCCGTCCCTCCCGTCCCCGATCTCCCCGCTCCCCTTCAACGCCGTCCTCTCCGTGTTCCTCCGGTGCCGCCGCCACCGCCGCGTCCCGGTCCTCTTCGACGAGCTCTCCAAGGAGTTCTCCATCACACCTGACGCCTCCTCCTACGGCATCCTGGTCAAGGCATACTGCATGCTGAGCAAAGACGCCAAGGCACACGAGGTGTTAGATCAAATGCGTGGGCAGGGTTTCACGCCGACCAATAGTATCTACACCACAATGATCGATTCCATGTATAAGCAGAAGAAGATGGAGCAGGCAGAGCGCTTGTGGAAGCAGATGTTGGAGAGCGGACGCAAGCCTGACCAAGCTGTATATAATACAAAGATCATGCACCATAGCCTTCACGGCAAGACGGAAGATGTGCTTGAGGTGATAGCAGAAATGGAGGAAGCTGGAGTGAAGCCGGATACCATCACTTACAATTTCCTCATGACTAGCTACTGCAAGCATGGTAAGATGGAGACTGCCAAGGAGCTGTACAGATCACTAGGCGAGAAGGGGTGCTCAGCAAACGCTGCCACGTACAAGCATATGATGGCACAGCTGTGTGCCCATGGAGATTTGGACGGTGCATTGGTGATCTTCAAGGAAAGCTATAGGAGCAACAAGGTGCCAGATTTTAGGACAATGAGTGGATTGGTTGAGGGATTGACAAAGGCTGGCAGGGTGGCTGAGGCAAAGAATATTGTTGCCAAGATGAAGAAGAAGTTCCCAGAGCAATTGCTGTCAGGGTGGATGAAACTCGAGAAGGAGCTTGGGTTGAACTCAGATAGCGGAGATGCAGGTACTCGGGCAGAATGTATATCTGAAGAAACTCCTTCTGAGGCCGAGGCTGCTATGCCAAAGACACTTGAGCTGGAAGATCCTTCTTCTGATGAAACAGAATGTATGGCAGAGGCGTCCACTAGTGAGGAAATGCCACGGGATTCTGCTTAA
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| Protein seq | MAALASLLLLRRRGGSHAADALLRALTTAAGEQPLTASAAKTRLRREHDPDRVVSLFEAIDDASLSASSTRHALSLAARRLSRSRRFADAEALLSSHIPASPTEPQLAAVLCSYAAASLPEKALAAFRSAAPSLPSPISPLPFNAVLSVFLRCRRHRRVPVLFDELSKEFSITPDASSYGILVKAYCMLSKDAKAHEVLDQMRGQGFTPTNSIYTTMIDSMYKQKKMEQAERLWKQMLESGRKPDQAVYNTKIMHHSLHGKTEDVLEVIAEMEEAGVKPDTITYNFLMTSYCKHGKMETAKELYRSLGEKGCSANAATYKHMMAQLCAHGDLDGALVIFKESYRSNKVPDFRTMSGLVEGLTKAGRVAEAKNIVAKMKKKFPEQLLSGWMKLEKELGLNSDSGDAGTRAECISEETPSEAEAAMPKTLELEDPSSDETECMAEASTSEEMPRDSA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.574015 | 2.338811 | 1.838929 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0488500 | SBH | 1.541467 | 0.446139 | 1.725239 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g42210 | RBH | 1.542414 | 1.393871 | 0.428261 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0633200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0026210 | RBH | 0.739327 | 1.450616 | 2.456455 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0026330 | RBH | 0.000000 | 0.600451 | 1.105386 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0026180 | RBH | 0.706620 | 0.000000 | 2.405728 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0025740 | RBH | 0.118926 | 0.032935 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025860 | RBH | 1.608338 | 1.870572 | 6.313553 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0367500 | SBH | 0.799686 | 5.0926975 | 1.9489155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025680 | RBH | 0.147938 | 0.358230 | 0.600865 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0608700 | SBH | 2.2917975 | 9.556438 | 17.4293305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0026040 | RBH | 0.046180 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0025700 | RBH | 0.203686 | 6.160687 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0026080 | RBH | 1.317524 | 3.531462 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025900 | RBH | 0.411671 | 0.797108 | 1.108311 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0025550 | RBH | 0.131844 | 2.322729 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G026190 | RBH | 0.429872 | 1.825288 | 0.606186 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025940 | RBH | 0.530707 | 4.414354 | 2.716600 |
