Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0627800 | OGI:02071080 | 11/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:25072518-25076274 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGTTTCTGAACTTGAGGTTTGCAATCATGGAACCTTCGCAAGAAGTGACCGGAGATGATTTGTGTGCAAACTCAAATTTTTGAAGAACAAAAGGACTAGGATCATTTGAAGGGTAGTATCTCTGTAGAGGTTTAGAAAAGAGAATTTGAATACAAGGATGAGATTAGTGAGGCTTTTGACATTAGGGATCTGAGACAAAGGAGATATTTAAATTGAGATCAAGTTTCCAAATATAAAAGAAATCAAGGAATTCGATATTTTTTGTATAGGTTTGTACTTGGGAACTTGTAAGATTATTTGGGAGGCATTTGAAGTGGGATGTGAGTCCAAATGTATGACTGGAGGAACAATATGGGGAGTCAAGGAAAGAACATCAAGATGGAAACATGATATCTTTCGGGATGGGTTTGTATTTTGTGGGCTCAACAAATTATTTAGACGGAATTTCAAAGGGGAGCGAAATCTTGTGAGGTTGAATGTCAAATCGGAAACTCGGTATTTTTGGAATAGATTTGTGTTTAGGCTTGATGGACTATTTTGGCAGATATCCAACAATGAAGGAAACAAGTCTCAAAAGTTGGGGTTCCACATAAAAGAGTTGAATTTGGATCTGTGTTTTTGAGATTTGAACAGATGCTTGGCAAAGGATTTCAAAGGATGATAGAGCGATAGGTAGAGAGATTGCAAGGATAGGAGTTGAAAGCAGATATCGCAAATCTACTTATTCGGAGCGAGTCAAAGGAAGGTGGAGAGAGAGATGGTGGAATTTAAGAAATGCAGTTCGATTTCGAGAGTTGGTTTGAAGGAAACCCGGGGAGAGTTTAGGTCTCAGAGGTGAAGCATCTGACTGATTTAGGGTTTCAAAGAGATTTGACTGGATTTACATCTTGGTGTTGGAACGAGTATTCGGGAAGGAATTCAAAGAGGAAGACAATATTCAGAAAGGAATCAAAAGGGAGATATGGTTAGAGAGTGTGTGTGTTTAACTCAAGAGCTTGAATTCGGTTTCGAGAACCGAATTTTGGGACGTTTATTTGGTAGCAAGGAAATAGGGATGACTGGAATGTCGGTTCAGATTGTCTGACGGATTATTGAACTTGGACAATTTCAGGGGAAATTGGTCGAGTGGGATTTAAGACAGAAATTCGAATACAAAGGTTCAAACTTCGAGAATTGTTTCAGTGAATCAAGGGGTTAGGTTAGGATTTTCGAGGTGGATGCTCGGGCTAGATTGGTTTCAGGAATTCGACGAGATCTGTGGTTAGGGCTCTAGAAGCGAAATGCAAATATAAGGATTCGATCTTCAAAACGATCCTCGAAACGAAAACTGGGATTCGAGTTTGCTGAACTTGAGGTTTGCAATCACGGAACCTTCGCAAGAAATGACCGGAGATGATTTGAGTGCGGACTCAAATTTTTTAAGAACAACAGGACTAGGATCATTTGAAGGGTAATATCTCGGTAGAGGTTTAGAAAGGAGATTTTGAATACAAGGATGAGATTAGTTTCGGACAGGGATTTTTGAGACAAGGGAGGCTTTTGACATTAGGGAATTGAGACAAAGGAGATATTTAAATTGAGTAATCAAAATTTCATAGGCAAGATTAAGTAACTAAAGCAAATGAAAAAAAGACAACCTCTGAATATGAAACTAAAGGACAATAGGTTATCAACGATTGTGAAAAGATGGATTATTTATTTAGCATTCCAAATTGATACTAGAATTGAAATCCCTTTCTGGGCATGCAGTCAACACAATTCATTCACAGCTCGTATTCTTCAGATTCAATGTGTAATTAAATTTCATGGGCAAAGATCAAGTCATGAAGAAGAAGACATACAGCAATTGTGGCTCGGCTAAGCCGGTGTGGTACTCCAGAAGATCGCTCCATAGTGGGCTCAGGGCAAGGCCCAAGGGTACACCGAGCAGCGTAGACGGCAGCGGCTGCTATCACCGATGTCATGTGCTCCAGCTGCATTGACAGAAAAAAGAATGGCACATTACAACAGATTGAAGATGTATAGCATCAGCAGAAGAACAACTGAAAATGGACTGTGCATGTTAGTTACCTCCTTGTCACCCAATGCAGCTTTCAGGTATCGAAGGATGAACATGTACATTGTCGGAACAGTCAGGTTCCACTGGAGCTTGTTAAGTATGGACTTCTCTGTGCTCAGAACCTGCTGCCTGCTGAAGGAGTTGTCTGATATGACAAGGAAGTCCTTAAACTACAATTATGGCAGCTCAACTGTAAGACAAGAAGCAAGCTGAACATCATGTGCAAATTGAACAGCATTGAACATAATAGCAAGCTGAACATCGTATGCAAATTGAGCAGCGCTGAACACAATAGCAAGCTGAACATCAAATGCAAAATTGAACAGCATCAGTGGAAGAATCCTTACCAATGGAGCCCAAGTCTCCTCATACTTGCAGGCTATCAACATGGCGCTTACTCCGACAAGCTGCAGCTCATTCCTGGCCACATTCTCCAGGGACAGGTACTGATCAATTATGTAGACAGTGAGGTACAGGGTCTCCGGCATCAGCATAAGCCTGTAGTGCACTTCGATGAGCCAATCAGTCAGGATTGCTCTCATTCTCTCGTTGATCTCGGTCTGTGACACCATGTAGGTGCAGAGAGGCCGGTAGGTGTTCTGGACGAATCAAGAAGCAAGAGTAATCAATCACTAATCACCAATTGATTTGGCATAAGCATAAAAGAAGAGGAAGCTAAGCTCACCTCAGTGCTCCTGTAGAATCTGTAGATATCTTCGACGTAATCAATCACTGCCAGCTCGTTGTGAGCATCAGATGCATCGATGTCGTATATCAGCTCCTTTTTCGGGCTGATCACACCGCCAGAAGCCTGTGTTCAGAACAAGTTCAGCAAAAGAAGAACAAAAAAGATTCTTCAGACAAAAATTCCTAACATTCGACAGAATCAAACAACACATACCCTGCTGCACTTGGTCAGAATCGAGGTGAGCGTTTGGATTGGTGCCCTCCGGGAGGCTGCTCTCTGGGCTGGACTTTTCTTCTGTTTCTCGGAGTCCGAACTGATCACGATGACTTCTGGCTTAGCCTTGTTGTTCTCGTTGCGCTGCTTGATTGGTTTCCTGCACTTGTCAGCTGCTGCTGGAGCCTTCTGGCGATTAACGACAGGCAGAGCAGCCCGGCCATTGACGAGATTACTGACGTCAGCGAGGGCTCGACGGATTCCTGGTGGTTGCTGAGCAACAACCGTTGTGATCTTTGGCCTCCTGACAATCTTGGCAGCGTCTGCACAAAGTCAAAATTTCAGATCAGGAACACATAAAGCACAGAATCGCCAAGGGAGAAATCTTGTACGGAAATTTAAGCTCAGACGAACAAGACGAAAGCACACGCATGATTCAAGCAGGCTACTAATATTACAGCTCAGAACAAGAAACGCGATTCATTAGGTGAAATGCAATTTTGGGAAGATGCCAGATTTATCCAAGCAAACCCAAAGAACAACGCAGAAACCATTTCTATGCCAAAATTGCGATCAATTCAAGAAATCTACCAACGCGACAAACATCTGCTTCCACTACGGGCGCATGCGTTCCGATCAAATTCTGGGACCAAAAAATAATCCACACATGAACAGGATTTTCAAAAGGCGCTCTATTTACGCCGAATCAGAACAAGAACCCGTATCAAATCCATACAATTTCACAATGAAGCGTCGATCGGACAAGAATCCGTAAAAGAACCCGCAAGAACACAT
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| CDS seq | ATGTGTTCTTGCGGGTTCTTTTACGGATTCTTGTCCGATCGACGCTTCATTGTGAAATTGTATGGATTTGATACGGACGCTGCCAAGATTGTCAGGAGGCCAAAGATCACAACGGTTGTTGCTCAGCAACCACCAGGAATCCGTCGAGCCCTCGCTGACGTCAGTAATCTCGTCAATGGCCGGGCTGCTCTGCCTGTCGTTAATCGCCAGAAGGCTCCAGCAGCAGCTGACAAGTGCAGGAAACCAATCAAGCAGCGCAACGAGAACAACAAGGCTAAGCCAGAAGTCATCGTGATCAGTTCGGACTCCGAGAAACAGAAGAAAAGTCCAGCCCAGAGAGCAGCCTCCCGGAGGGCACCAATCCAAACGCTCACCTCGATTCTGACCAAGTGCAGCAGGGCTTCTGGCGGTGTGATCAGCCCGAAAAAGGAGCTGATATACGACATCGATGCATCTGATGCTCACAACGAGCTGGCAGTGATTGATTACGTCGAAGATATCTACAGATTCTACAGGAGCACTGAGAACACCTACCGGCCTCTCTGCACCTACATGGTGTCACAGACCGAGATCAACGAGAGAATGAGAGCAATCCTGACTGATTGGCTCATCGAAGTGCACTACAGGCTTATGCTGATGCCGGAGACCCTGTACCTCACTGTCTACATAATTGATCAGTACCTGTCCCTGGAGAATGTGGCCAGGAATGAGCTGCAGCTTGTCGGAGTAAGCGCCATGTTGATAGCCTGCAAGTATGAGGAGACTTGGGCTCCATTGTTTAAGGACTTCCTTGTCATATCAGACAACTCCTTCAGCAGGCAGCAGGTTCTGAGCACAGAGAAGTCCATACTTAACAAGCTCCAGTGGAACCTGACTGTTCCGACAATGTACATGTTCATCCTTCGATACCTGAAAGCTGCATTGGGTGACAAGGAGCTGGAGCACATGACATCGGTGATAGCAGCCGCTGCCGTCTACGCTGCTCGGTGTACCCTTGGGCCTTGCCCTGAGCCCACTATGGAGCGATCTTCTGGAGTACCACACCGGCTTAGCCGAGCCACAATTGCTAGATACTACCCTTCAAATGATCCTAGTCCTTTTGTTCTTCAAAAATTTGAGTTTGCACACAAATCATCTCCGGTCACTTCTTGCGAAGGTTCCATGATTGCAAACCTCAAGTTCAGAAACTAG
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| Protein seq | MCSCGFFYGFLSDRRFIVKLYGFDTDAAKIVRRPKITTVVAQQPPGIRRALADVSNLVNGRAALPVVNRQKAPAAADKCRKPIKQRNENNKAKPEVIVISSDSEKQKKSPAQRAASRRAPIQTLTSILTKCSRASGGVISPKKELIYDIDASDAHNELAVIDYVEDIYRFYRSTENTYRPLCTYMVSQTEINERMRAILTDWLIEVHYRLMLMPETLYLTVYIIDQYLSLENVARNELQLVGVSAMLIACKYEETWAPLFKDFLVISDNSFSRQQVLSTEKSILNKLQWNLTVPTMYMFILRYLKAALGDKELEHMTSVIAAAAVYAARCTLGPCPEPTMERSSGVPHRLSRATIARYYPSNDPSPFVLQKFEFAHKSSPVTSCEGSMIANLKFRN |
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| Function | Cyclin-B1-3 [UniProtKB/Swiss-Prot:Q0JNK6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0627800 | OsNip_02t0627800-00 | Chr02 | 25072518 | 25076274 | - | RAP2018-11-26 | ||
| CDS seq | ATGTGTTCTTGCGGGTTCTTTTACGGATTCTTGTCCGATCGACGCTTCATTGTGAAATTGTATGGATTTGATACGGACGCTGCCAAGATTGTCAGGAGGCCAAAGATCACAACGGTTGTTGCTCAGCAACCACCAGGAATCCGTCGAGCCCTCGCTGACGTCAGTAATCTCGTCAATGGCCGGGCTGCTCTGCCTGTCGTTAATCGCCAGAAGGCTCCAGCAGCAGCTGACAAGTGCAGGAAACCAATCAAGCAGCGCAACGAGAACAACAAGGCTAAGCCAGAAGTCATCGTGATCAGTTCGGACTCCGAGAAACAGAAGAAAAGTCCAGCCCAGAGAGCAGCCTCCCGGAGGGCACCAATCCAAACGCTCACCTCGATTCTGACCAAGTGCAGCAGGGCTTCTGGCGGTGTGATCAGCCCGAAAAAGGAGCTGATATACGACATCGATGCATCTGATGCTCACAACGAGCTGGCAGTGATTGATTACGTCGAAGATATCTACAGATTCTACAGGAGCACTGAGAACACCTACCGGCCTCTCTGCACCTACATGGTGTCACAGACCGAGATCAACGAGAGAATGAGAGCAATCCTGACTGATTGGCTCATCGAAGTGCACTACAGGCTTATGCTGATGCCGGAGACCCTGTACCTCACTGTCTACATAATTGATCAGTACCTGTCCCTGGAGAATGTGGCCAGGAATGAGCTGCAGCTTGTCGGAGTAAGCGCCATGTTGATAGCCTGCAAGTATGAGGAGACTTGGGCTCCATTGTTTAAGGACTTCCTTGTCATATCAGACAACTCCTTCAGCAGGCAGCAGGTTCTGAGCACAGAGAAGTCCATACTTAACAAGCTCCAGTGGAACCTGACTGTTCCGACAATGTACATGTTCATCCTTCGATACCTGAAAGCTGCATTGGGTGACAAGGAGCTGGAGCACATGACATCGGTGATAGCAGCCGCTGCCGTCTACGCTGCTCGGTGTACCCTTGGGCCTTGCCCTGAGCCCACTATGGAGCGATCTTCTGGAGTACCACACCGGCTTAGCCGAGCCACAATTGCTAGATACTACCCTTCAAATGATCCTAGTCCTTTTGTTCTTCAAAAATTTGAGTTTGCACACAAATCATCTCCGGTCACTTCTTGCGAAGGTTCCATGATTGCAAACCTCAAGTTCAGAAACTAG
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| Protein seq | MCSCGFFYGFLSDRRFIVKLYGFDTDAAKIVRRPKITTVVAQQPPGIRRALADVSNLVNGRAALPVVNRQKAPAAADKCRKPIKQRNENNKAKPEVIVISSDSEKQKKSPAQRAASRRAPIQTLTSILTKCSRASGGVISPKKELIYDIDASDAHNELAVIDYVEDIYRFYRSTENTYRPLCTYMVSQTEINERMRAILTDWLIEVHYRLMLMPETLYLTVYIIDQYLSLENVARNELQLVGVSAMLIACKYEETWAPLFKDFLVISDNSFSRQQVLSTEKSILNKLQWNLTVPTMYMFILRYLKAALGDKELEHMTSVIAAAAVYAARCTLGPCPEPTMERSSGVPHRLSRATIARYYPSNDPSPFVLQKFEFAHKSSPVTSCEGSMIANLKFRN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 2.988138 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0563700 | RBH | 0.0 | 0.0 | 1.648389 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g41720 | RBH | 0.000000 | 0.000000 | 0.236823 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0627800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025820 | RBH | 0.0 | 0.0 | 2.926987 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025960 | RBH | 0.000000 | 2.860776 | 3.015255 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025780 | RBH | 0.0 | 0.0 | 1.757448 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0036860 | SBH | 0.000000 | 0.074501 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0037040 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0407300 | RBH | 0.221808 | 2.726501 | 1.494363 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025380 | RBH | 0.0 | 0.0 | 0.101687 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0435900 | RBH | 0.8237845 | 1.8474915 | 0.9878025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0025580 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0036900 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025700 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025600 | RBH | 0.0 | 0.256191 | 1.424564 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0036730 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G037310 | SBH | 3.154130 | 3.857224 | 15.060705 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025610 | RBH | 0.0 | 3.449652 | 9.165070 |
