Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0608000 | OGI:02067890 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:23845456-23846818 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATTCGAGATCATACTGTTTGATCTAGCTACCGTTATTTGATCTATAAATTCTACTATTCTAGTGTTAACCTCTCCACGAGGTAAATACTAGTACGAGATTTACACTCTCAAGTAAGTGAAAAGAGGAAGCAGCTGCTAGCTTTCAATTTGCTGAGGGCACTGAAACGCGTGGTGTTCGTCAGCTTCGCTGCCGCCGTGCTGGGGCTCCTCGCAGCCATCCTCGGGTTCGTCGCGGAAGGCGCCAAGTCCAATGCAAGTTTCACCTTCATCTCGATCTCACTTCTCGATAAGTTCTTGTGTGTGTGTGTGTTTGAATTTGACGTCTCGTGTTTTTTTCTGCGTGGATCGATCGATGGAGATGCAGTCGTTCGTGCGGTTCGACGGGAGGTACTGCGTGTACCGCGCCACGCCGGCGCTCGGCTGCGGGATCGCCGCGGCGATGTTCGTGCTGTCCGGCCAGGCCGCGGTCACCGCGGCGAGCGGCTGCTTCGGCCGCTGCCGCGCGCGCCGCGGCGAGGAGTCGTCGGCGCCCACGCCGGGCGAGCAGCGCAGGCGCTCCGTCGCCGCCTGGCTGTCCGTCATCTCGTGGTACGTATTAATTCTTGACTTGTTGCCACAGCATCCGCACGCGCGCGCGCGGCGGCGATGACCATTGTCGACGTCGCTGCAGGGTGTTGGTGGCGACGGCGGTGGCGATGTTCCTGTACGGCGCGTCGCGGAACGCGGCCGTGAGGAGGGGGCTCGCGGCGGCCGCGCTGGGCCGGCGAGGCAGGCGAGGCAGGCGCCGCGGCGGCGGCCGCGGCCGCAACGTGTACGGCTGCGCCGTCCTCGGGAGCGGGCTGTTCTCGGCGGCGTCCGTCGCGTCGCTCGCCGCCTCCGCCTGCGGGATCGCCGCCTACGTCTACGTCGAGGCGGATGGTGAATCATTGACACTCACGCCGACGACGCCGCCGCCGCGGCCTGGTGGGTTCGCCGGGGCGCCGGGCTCGGCGACGGGTGGTCAGCCGTATTTCCAGCCGCAGGTGGCGTACCCGGCCACGGGCTACGTCGCCAACCCTGCTGCGGCTCCTCCCCCACCACCGTACGGCGGCGGCGGCGGCGGCGACTACGCCGGCTATGTCGCCAAGTCGCGTGAAGGCACAGCTTGAGATTGCCAAAAAAAAAAAAAAAAGCGTCGAAGTAAGATCGCGCGAGAGGTTGCCAAGAACTCTGCCTTTGAACTGGTCTCGTTTAATGCTGATCTTTTCCTCGCTTGTGTGAAATTTCATTGTGTTGTAGAAGCAAATCGTGTATGCCACACTACATGACGATAACAATCTTCATGTCTTGGAATAATGAAACTTGTAAAAAACTGATAGGTCA
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| CDS seq | ATGGAGATGCAGTCGTTCGTGCGGTTCGACGGGAGGTACTGCGTGTACCGCGCCACGCCGGCGCTCGGCTGCGGGATCGCCGCGGCGATGTTCGTGCTGTCCGGCCAGGCCGCGGTCACCGCGGCGAGCGGCTGCTTCGGCCGCTGCCGCGCGCGCCGCGGCGAGGAGTCGTCGGCGCCCACGCCGGGCGAGCAGCGCAGGCGCTCCGTCGCCGCCTGGCTGTCCGTCATCTCGTGCATCCGCACGCGCGCGCGCGGCGGCGATGACCATTGTCGACGTCGCTGCAGGGTGTTGGTGGCGACGGCGGTGGCGATGTTCCTGTACGGCGCGTCGCGGAACGCGGCCGTGAGGAGGGGGCTCGCGGCGGCCGCGCTGGGCCGGCGAGGCAGGCGAGGCAGGCGCCGCGGCGGCGGCCGCGGCCGCAACGTGTACGGCTGCGCCGTCCTCGGGAGCGGGCTGTTCTCGGCGGCGTCCGTCGCGTCGCTCGCCGCCTCCGCCTGCGGGATCGCCGCCTACGTCTACGTCGAGGCGGATGGTGAATCATTGACACTCACGCCGACGACGCCGCCGCCGCGGCCTGGTGGGTTCGCCGGGGCGCCGGGCTCGGCGACGGGTGGTCAGCCGTATTTCCAGCCGCAGGTGGCGTACCCGGCCACGGGCTACGTCGCCAACCCTGCTGCGGCTCCTCCCCCACCACCGTACGGCGGCGGCGGCGGCGGCGACTACGCCGGCTATGTCGCCAAGTCGCGTGAAGGCACAGCTTGA
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| Protein seq | MEMQSFVRFDGRYCVYRATPALGCGIAAAMFVLSGQAAVTAASGCFGRCRARRGEESSAPTPGEQRRRSVAAWLSVISCIRTRARGGDDHCRRRCRVLVATAVAMFLYGASRNAAVRRGLAAAALGRRGRRGRRRGGGRGRNVYGCAVLGSGLFSAASVASLAASACGIAAYVYVEADGESLTLTPTTPPPRPGGFAGAPGSATGGQPYFQPQVAYPATGYVANPAAAPPPPPYGGGGGGDYAGYVAKSREGTA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0608000 | OsNip_02t0608000-00 | Chr02 | 23845809 | 23846604 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGATGCAGTCGTTCGTGCGGTTCGACGGGAGGTACTGCGTGTACCGCGCCACGCCGGCGCTCGGCTGCGGGATCGCCGCGGCGATGTTCGTGCTGTCCGGCCAGGCCGCGGTCACCGCGGCGAGCGGCTGCTTCGGCCGCTGCCGCGCGCGCCGCGGCGAGGAGTCGTCGGCGCCCACGCCGGGCGAGCAGCGCAGGCGCTCCGTCGCCGCCTGGCTGTCCGTCATCTCGTGCATCCGCACGCGCGCGCGCGGCGGCGATGACCATTGTCGACGTCGCTGCAGGGTGTTGGTGGCGACGGCGGTGGCGATGTTCCTGTACGGCGCGTCGCGGAACGCGGCCGTGAGGAGGGGGCTCGCGGCGGCCGCGCTGGGCCGGCGAGGCAGGCGAGGCAGGCGCCGCGGCGGCGGCCGCGGCCGCAACGTGTACGGCTGCGCCGTCCTCGGGAGCGGGCTGTTCTCGGCGGCGTCCGTCGCGTCGCTCGCCGCCTCCGCCTGCGGGATCGCCGCCTACGTCTACGTCGAGGCGGATGGTGAATCATTGACACTCACGCCGACGACGCCGCCGCCGCGGCCTGGTGGGTTCGCCGGGGCGCCGGGCTCGGCGACGGGTGGTCAGCCGTATTTCCAGCCGCAGGTGGCGTACCCGGCCACGGGCTACGTCGCCAACCCTGCTGCGGCTCCTCCCCCACCACCGTACGGCGGCGGCGGCGGCGGCGACTACGCCGGCTATGTCGCCAAGTCGCGTGAAGGCACAGCTTGA
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| Protein seq | MEMQSFVRFDGRYCVYRATPALGCGIAAAMFVLSGQAAVTAASGCFGRCRARRGEESSAPTPGEQRRRSVAAWLSVISCIRTRARGGDDHCRRRCRVLVATAVAMFLYGASRNAAVRRGLAAAALGRRGRRGRRRGGGRGRNVYGCAVLGSGLFSAASVASLAASACGIAAYVYVEADGESLTLTPTTPPPRPGGFAGAPGSATGGQPYFQPQVAYPATGYVANPAAAPPPPPYGGGGGGDYAGYVAKSREGTA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0608000 | OsNip_02t0608000-01 | Chr02 | 23845456 | 23846818 | + | IsoSeq | ||
| CDS seq | ATGTCGCCAAGTCGCGTGAAGGCACAGCTTGAGATTGCCAAAAAAAAAAAAAAAAGCGTCGAAGTAAGATCGCGCGAGAGGTTGCCAAGAACTCTGCCTTTGAACTGGTCTCGTTTAATGCTGATCTTTTCCTCGCTT |
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| Protein seq | MSPSRVKAQLEIAKKKKKSVEVRSRERLPRTLPLNWSRLMLIFSSL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 23846044 | 23846127 | + | OsNip_02t0608000-00 | OsNip_02t0608000-00,OsNip_02t0608000-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.443418 | 0.187938 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g39510 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0608000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0024350 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0024490 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0024490 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0024130 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024030 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0389800 | RBH | 0.604981 | 0.0476815 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0023900 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0417600 | RBH | 0.4421315 | 0.0383295 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0024150 | RBH | 0.082679 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0024110 | RBH | 0.440068 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0024420 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024170 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0023870 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024300 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024150 | RBH | 0.0 | 0.0 | 0.0 |
