Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0580800 | OGI:02063710 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:22363648-22367355 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACATGATAAGAAAGCATTTATATAAATATAAATCCAATGGTATCACTTGTGTCACTAAACATATTGTATTGCCTTTTTTTTTCCAAATACATAACACACCTTCTATTTGATTCAACAAATGAAGTAGCCTTGAAAAGGGCAGGGGAGGTCCTTAACTAGTAAACTCTGACATTGTGTGCACCACGATATCACATTAGAGCACCCTTGGTTTCAATCTGTAAATATTAACTGTAAATAGATTTGCATAATTTCACTGTCCTACAATATGGAAAGGGAAAGCATAAATCTTAAAGCACAATTTATGCACATGGAAGTACCTAGGTTATTCTGTTGATCATTTGCTACCCAAAATTTCAGAAAAGAGGGTAAATTAGCTCAACAGAAGCAATTGTGCATGAGATACGCAAAGGAATGTAGTACCATTCCTATGTGGTCACCTAATTAGTTAAGTACTCACAATGAAAAGACAACAACTTCATCATATGACGGAGATAATTTAAGTAGCAAATCCAGCCCAACAAATAATGAACCGTATTTTAGAGAGAAATAGAATTTTAAAACAAAAACGAAAATATCTTGTAAAAACAGCAATATCAAATCCTTTATCAATACATTTATACACTGTCCAAAGTGGTAAACAAACATATTTTCTTCATAATCCAGAACAATATGAAACCCAAAGCGAAGAAAAAGAATGCACCATATGAGAAGTAAACAAACATCTTTACCAAGAAAAAAAAGTCCATTTTACTTCCCCGAACTATTTCGCCTGACCACTTAGCCCCCTAAACAATTTTTCAGCTCATTAAAATGGACCTTTTTCTTTCAATGAAATGAACTTTTTTCTTTCAACAAAGGCTGATCTTACAATATAACCCATATGATCGATTTAGGAATTCAAGGTTTATCACCGTGGTTACATGTTAACCCATTCACCCATTCACTTTACTAGGATTTTCAACAAAGGTTGATCTTACAATATAACCTATTTGATTGATTTAGGAGTTCAAGGTTTATCACCATGATTGCATGTGGCTTACTGCTACCTGATGGTGCTTGTGCATTCTATGAAAGTAAAAACTAAATACCAAGAGGGAAGGAGCAAGGTACCATACTCAATTCGAATGACTGAGATTTAATTCCTTGGGTAGATATCTTGAAAAGATGGAGGGAAAGAATTACTGATGAGCAGCCTGAAACATGAGCCAAGCGATATCTAATAGAAAATAATAGCAAATAACAAAACAAGTAAATGTTGCACGCTGGAACAGAAAATGACCTGGAAAGAGATGCATTTGTCCCTAGATAACATACTACTAGCTCCGTCCCAAAATACTTGTTGCTTTATTATCAAAAGTACTTTAAGTATCACTTATCCTTTTTTATATTTGCACTAATTTTTCAAATAAGAGGAATGGTCAAACGTTACAAGAAAAAAGACAAAGTGACCACTAATTTAGGACGGAGGTAGTACTAGATAAATCCAATTTAAGTACACCCATAGACAAAGGCATGCATAATTCGTCAATGATAAGATTACCTATTAAGAAAGACCAGAAAAATGTAACTAGAAAGTGCAGAAGATTGAAAGAACCATAAAGGGTTTACAAGCTAATACAACATAGTTACTGAGTAGATAATGTGGATTGTGGAGAACAAATAGCAGATTTCACAAGTCGACAACAAACACCCTGTATAGCTATTATTTATAGACTCCCACACCATGAATAACAAAGGGTCCTCTCAGCAACATATTCACCATACACAAAGCAAACTCATCAAAAGTCAACAAATTACTGGGGAACTTTCTATTACGATTAAACAGCCTATGCCGATATTCACATTTCTTTATATGAAAAGGCAAACGTAGGTAACATACCAAACAGTACCATGCATAGAGAAGAACTGTGATGATTAACTAGGTCATAACCCTGCCATCTTAGTATCTTGGACCCATACTACAAGAACGGGACAGACGTAAATTCCCCATCTCACGTTCACTTCCAACCGTTTCTCCACCTGAAGAAGCTGAGATGTACTGCTTCCTGCAGGCAGGACAGCGCCCATCTGCCTCAAGAATTCTCTTGTGGCAGAACAGACACAGATGAAAACCGCAGGGGCAAGGGAGGAAGCTTGAATCTGTTGGATCAAGGTCCTCGTAGCATATAGGGCAGGATGTCGGCTTTGAGGGGACTCCCTTTTGTGCAGATCCTATCCCCATTGCCACCCAACAGTTACCCATGCTAGCTGGAAAGCTGACTTGTTTGGAGAGGCTGGGTAAACTCTGTGGACGGAATGCATCATCTGGGCTCCAAGCTCTTGTACTACTCTTGATTGGTTCTTGCCTTGTTGCTGCATTAGCGGGCACTGGACAAGATGCAGGTACAACTGGTGGATCTGCCGGCACTGGATCCTGGTGATTATGGTTGTCATCCACTGAGAGTGCATCGGCAACAGCTTCCCAATCATCCAAAACTCCATCATCATCATTCTCGGGGCTACCACCAGTGTCATCGTCAGAATCAGTCACACTCCGAGAGCTGGACCAAGCACTGCTGCCGCTGCTGAAGCTACGGCCACCACCATTGCCCGAGCAGTGCTTCTGCTGCAAGCAGCCAATAGGAGGGTTGTAGGAGACAGGGCTGTGCAACGGAGACTCATGATCACTGCTACCAACATCCTGGCTAGCGCCAACTGAATCCTCCTTGAAATCCTCTGGATCCCCTTCCCTCGTCCGAATCTCTGCACGCCGGCGAGGGAGTGGAGGGTGCGGGGATGCGAGGATCGGCGACCCGGAGTTGGCTCCTGCCGCTGCTCCAGGGGATACCACAGCCTTCACCTCCTTCCCATCCTTCACTAGACCAATCCAAACAGAAGATGGATCAGATTCTGAGCAAATGGCCAAATGATCAACTAATGATTGAAGCTTTCTCACCCCAGATCCCAAATCAAGCAAAACACATCAAAATGGGACCAAAAGACCGAAACAAAGATTCCAACTTTCTCACCCGACAGCGCAGAATTCATCAAAAGCATCGCCTAAAAACCCATCAAAGCAAAAAAAGAATAGCTCTCTTTAGGCAGACTCCACCAATACAATGAACCGAATTTGAGGGCAAATTGAAACCCAAGATCCCAATTTCCCCCCCCCCCCCCCCCCCACCCAGATCACCTGGGCCGACCCAACAACATCCAAAATCAAACATGATTGGGAAAACAAAAAAAAAAAACAGATAAGGAGCGCGAGAGATCAGACCCTGCGAAAGCCACTGCTCCCGCCGCACGTCGAGCTTGCTCTGCTTCAGCTTCGCCGACCGATTCCCCTGCAAAAACAGAAACACCCACCACCACCACCACCACCCAAAAAAAAAAATCCCCACGGATCAGCACCCCCATCTCATCCAATCGAAAACATCCGAACTCGAATCGGAGAGAACCCCCCACCCTTATCCGCTTCTTCTTCGCGTCGCGCGCGGTCGACGGTGAGGACGCGTCGTGGGCCATGGCGTCGTATCCCATCCCCTCCCCTTCCCTTCTCCCTTCTTTACACACTGCCGCAGCACACACGCGCTCGCAACCTCGCCGCCGCTGGAGCCGGAGGAGGAGGAAGAGGAGGAAGGAGAGGAGGAGTAAACCCTAGCGCGAGCCGAGACGAGGCGGAGGAGGAAGGAGGAGCGGAAGCTGCAGCTGATGAGGATAATACGGCG
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| CDS seq | AGCAGAGCAAGCTCGACGTGCGGCGGGAGCAGTGGCTTTCGCAGGGATGGGAAGGAGGTGAAGGCTGTGGTATCCCCTGGAGCAGCGGCAGGAGCCAACTCCGGGTCGCCGATCCTCGCATCCCCGCACCCTCCACTCCCTCGCCGGCGTGCAGAGATTCGGACGAGGGAAGGGGATCCAGAGGATTTCAAGGAGGATTCAGTTGGCGCTAGCCAGGATGTTGGTAGCAGTGATCATGAGTCTCCGTTGCACAGCCCTGTCTCCTACAACCCTCCTATTGGCTGCTTGCAGCAGAAGCACTGCTCGGGCAATGGTGGTGGCCGTAGCTTCAGCAGCGGCAGCAGTGCTTGGTCCAGCTCTCGGAGTGTGACTGATTCTGACGATGACACTGGTGGTAGCCCCGAGAATGATGATGATGGAGTTTTGGATGATTGGGAAGCTGTTGCCGATGCACTCTCAGTGGATGACAACCATAATCACCAGGATCCAGTGCCGGCAGATCCACCAGTTGTACCTGCATCTTGTCCAGTGCCCGCTAATGCAGCAACAAGGCAAGAACCAATCAAGAGTAGTACAAGAGCTTGGAGCCCAGATGATGCATTCCGTCCACAGAGTTTACCCAGCCTCTCCAAACAAGTCAGCTTTCCAGCTAGCATGGGTAACTGTTGGGTGGCAATGGGGATAGGATCTGCACAAAAGGGAGTCCCCTCAAAGCCGACATCCTGCCCTATATGCTACGAGGACCTTGATCCAACAGATTCAAGCTTCCTCCCTTGCCCCTGCGGTTTTCATCTGTGTCTGTTCTGCCACAAGAGAATTCTTGAGGCAGATGGGCGCTGTCCTGCCTGCAGGAAGCAGTACATCTCAGCTTCTTCAGGTGGAGAAACGGTTGGAAGTGAACGTGAGATGGGGAATTTACGTCTGTCCCGTTCTTGTAGTATGGGTCCAAGATACTAA
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| Protein seq | SRASSTCGGSSGFRRDGKEVKAVVSPGAAAGANSGSPILASPHPPLPRRRAEIRTREGDPEDFKEDSVGASQDVGSSDHESPLHSPVSYNPPIGCLQQKHCSGNGGGRSFSSGSSAWSSSRSVTDSDDDTGGSPENDDDGVLDDWEAVADALSVDDNHNHQDPVPADPPVVPASCPVPANAATRQEPIKSSTRAWSPDDAFRPQSLPSLSKQVSFPASMGNCWVAMGIGSAQKGVPSKPTSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADGRCPACRKQYISASSGGETVGSEREMGNLRLSRSCSMGPRY |
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| Function | General negative regulator of transcription subunit 4 [UniProtKB/Swiss-Prot:P34909] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0580800 | OsNip_02t0580800-02 | Chr02 | 22363648 | 22367317 | - | RAP2018-11-26 | ||
| CDS seq | AGCAGAGCAAGCTCGACGTGCGGCGGGAGCAGTGGCTTTCGCAGGGATGGGAAGGAGGTGAAGGCTGTGGTATCCCCTGGAGCAGCGGCAGGAGCCAACTCCGGGTCGCCGATCCTCGCATCCCCGCACCCTCCACTCCCTCGCCGGCGTGCAGAGATTCGGACGAGGGAAGGGGATCCAGAGGATTTCAAGGAGGATTCAGTTGGCGCTAGCCAGGATGTTGGTAGCAGTGATCATGAGTCTCCGTTGCACAGCCCTGTCTCCTACAACCCTCCTATTGGCTGCTTGCAGCAGAAGCACTGCTCGGGCAATGGTGGTGGCCGTAGCTTCAGCAGCGGCAGCAGTGCTTGGTCCAGCTCTCGGAGTGTGACTGATTCTGACGATGACACTGGTGGTAGCCCCGAGAATGATGATGATGGAGTTTTGGATGATTGGGAAGCTGTTGCCGATGCACTCTCAGTGGATGACAACCATAATCACCAGGATCCAGTGCCGGCAGATCCACCAGTTGTACCTGCATCTTGTCCAGTGCCCGCTAATGCAGCAACAAGGCAAGAACCAATCAAGAGTAGTACAAGAGCTTGGAGCCCAGATGATGCATTCCGTCCACAGAGTTTACCCAGCCTCTCCAAACAAGTCAGCTTTCCAGCTAGCATGGGTAACTGTTGGGTGGCAATGGGGATAGGATCTGCACAAAAGGGAGTCCCCTCAAAGCCGACATCCTGCCCTATATGCTACGAGGACCTTGATCCAACAGATTCAAGCTTCCTCCCTTGCCCCTGCGGTTTTCATCTGTGTCTGTTCTGCCACAAGAGAATTCTTGAGGCAGATGGGCGCTGTCCTGCCTGCAGGAAGCAGTACATCTCAGCTTCTTCAGGTGGAGAAACGGTTGGAAGTGAACGTGAGATGGGGAATTTACGTCTGTCCCGTTCTTGTAGTATGGGTCCAAGATACTAA
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| Protein seq | SRASSTCGGSSGFRRDGKEVKAVVSPGAAAGANSGSPILASPHPPLPRRRAEIRTREGDPEDFKEDSVGASQDVGSSDHESPLHSPVSYNPPIGCLQQKHCSGNGGGRSFSSGSSAWSSSRSVTDSDDDTGGSPENDDDGVLDDWEAVADALSVDDNHNHQDPVPADPPVVPASCPVPANAATRQEPIKSSTRAWSPDDAFRPQSLPSLSKQVSFPASMGNCWVAMGIGSAQKGVPSKPTSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADGRCPACRKQYISASSGGETVGSEREMGNLRLSRSCSMGPRY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0580800 | OsNip_02t0580800-03 | Chr02 | 22365276 | 22365476 | - | RAP2018-11-26 | ||
| CDS seq | - |
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| Protein seq | - |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0580800 | OsNip_02t0580800-01 | Chr02 | 22365326 | 22367331 | - | RAP2018-11-26 | ||
| CDS seq | AGCAGAGCAAGCTCGACGTGCGGCGGGAGCAGTGGCTTTCGCAGGGATGGGAAGGAGGTGAAGGCTGTGGTATCCCCTGGAGCAGCGGCAGGAGCCAACTCCGGGTCGCCGATCCTCGCATCCCCGCACCCTCCACTCCCTCGCCGGCGTGCAGAGATTCGGACGAGGGAAGGGGATCCAGAGGATTTCAAGGAGGATTCAGTTGGCGCTAGCCAGGATGTTGGTAGCAGTGATCATGAGTCTCCGTTGCACAGCCCTGTCTCCTACAACCCTCCTATTGGCTGCTTGCAGCAGAAGCACTGCTCGGGCAATGGTGGTGGCCGTAGCTTCAGCAGCGGCAGCAGTGCTTGGTCCAGCTCTCGGAGTGTGACTGATTCTGACGATGACACTGGTGGTAGCCCCGAGAATGATGATGATGGAGTTTTGGATGATTGGGAAGCTGTTGCCGATGCACTCTCAGTGGATGACAACCATAATCACCAGGATCCAGTGCCGGCAGATCCACCAGTTGTACCTGCATCTTGTCCAGTGCCCGCTAATGCAGCAACAAGGCAAGAACCAATCAAGAGTAGTACAAGAGCTTGGAGCCCAGATGATGCATTCCGTCCACAGAGTTTACCCAGCCTCTCCAAACAAGTCAGCTTTCCAGCTAGCATGGGTAACTGTTGGGTGGCAATGGGGATAGGATCTGCACAAAAGGGAGTCCCCTCAAAGCCGACATCCTGCCCTATATGCTACGAGGACCTTGATCCAACAGATTCAAGCTTCCTCCCTTGCCCCTGCGGTTTTCATCTGTGTCTGTTCTGCCACAAGAGAATTCTTGAGGCAGATGGGCGCTGTCCTGCCTGCAGGAAGCAGTACATCTCAGCTTCTTCAGGTGGAGAAACGGTTGGAAGTGAACGTGAGATGGGGAATTTACGTCTGTCCCGTTCTTGTAGTATGGGTCCAAGATACTAA
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| Protein seq | SRASSTCGGSSGFRRDGKEVKAVVSPGAAAGANSGSPILASPHPPLPRRRAEIRTREGDPEDFKEDSVGASQDVGSSDHESPLHSPVSYNPPIGCLQQKHCSGNGGGRSFSSGSSAWSSSRSVTDSDDDTGGSPENDDDGVLDDWEAVADALSVDDNHNHQDPVPADPPVVPASCPVPANAATRQEPIKSSTRAWSPDDAFRPQSLPSLSKQVSFPASMGNCWVAMGIGSAQKGVPSKPTSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADGRCPACRKQYISASSGGETVGSEREMGNLRLSRSCSMGPRY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0580800 | OsNip_02t0580800-04 | Chr02 | 22365435 | 22367355 | - | IsoSeq | ||
| CDS seq | CGCCGTATTATCCTCATCAGCTGCAGCTTCCGCTCCTCCTTCCTCCTCCGCCTCGTCTCGGCTCGCGCTAGGGTTTACTCCTCCTCTCCTTCCTCCTCTTCCTCCTCCTCCGGCTCCAGCGGCGGCGAGGTTGCGAGCGCGTGTGTGCTGCGGCAGTGTGTAAAGAAGGGAGAAGGGAAGGGGAGGGGATGGGATACGACGCCATGGCCCACGACGCGTCCTCACCGTCGACCGCGCGCGACGCGAAGAAGAAGC
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| Protein seq | RRIILISCSFRSSFLLRLVSARARVYSSSPSSSSSSSGSSGGEVASACVLRQCVKKGEGKGRGWDTTPWPTTRPHRRPRATRRRS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 22366499 | 22366905 | - | OsNip_02t0580800-04 | OsNip_02t0580800-01,OsNip_02t0580800-02,OsNip_02t0580800-04 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.574329 | 5.672861 | 5.076519 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0463700 | RBH | 1.510115 | 4.305264 | 5.704674 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g37030 | RBH | 2.778053 | 3.291262 | 1.544175 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0580800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0022520 | RBH | 1.807091 | 12.809771 | 11.588232 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0022630 | RBH | 0.483632 | 2.784786 | 2.060433 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0022620 | RBH | 2.977326 | 10.680259 | 13.882217 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0022320 | RBH | 0.350484 | 0.251619 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0022260 | RBH | 17.998487 | 20.502266 | 23.619539 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0366200 | RBH | 16.0202175 | 22.991033 | 40.6245765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0022010 | RBH | 0.503416 | 0.800794 | 1.602204 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0394400 | RBH | 17.827058 | 27.2494965 | 16.781394 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0022440 | RBH | 0.726756 | 0.465867 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0022170 | RBH | 2.110972 | 10.776934 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0022650 | RBH | 7.319388 | 24.207968 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0022330 | RBH | 1.472248 | 0.305082 | 2.938077 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0022130 | RBH | 1.637830 | 9.756340 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G022580 | RBH | 1.292743 | 3.608606 | 2.992555 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0022420 | RBH | 4.350623 | 21.145954 | 12.620712 |
