Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0560700 | OGI:02060970 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:21273295-21273834 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCGCCGTGGCAGGTGGCGCTCGCCGGGTTCCGGCGCGGCGCGGTGACGGTCGCCGGCGACGCGATGCACGCCATGGGGCCCTTCATCGGCCAGGGCGGCTCCGCGGGGCTGGAGGACGCCGTCGTGCTCGCCCGCTCGCTGTCGTCGGCGGCGGCCGGCGATGGCCGGGCGCCGCCGCGTCAGCAGCTGCGCGACGACGCCGTCGGCGCGGCGATAGACGAGTACGTCGCGGAGAGGCGGCGGAGGGCGACGACGCTGTGCCTGCACAGCTTCGCCATCGGGACGTTGCTGACGACGAGGTGGCTCGCCGTGAAGCTCGCGTGCGTCGCCGTCCTGGCGCTCCTCGGCGGCGACTCGCGCCGTGATGCGGACTACGACTGCGGCCGCCTCTAGCGGACCATCCGTTTCGTTTATTCGCGAAACAAGTCAAACGATATATTTATAAACTAAAAGTAATTTGTTTTTATATACGTGTTCTTAACGATCAAAAAGCAAATGCTGAAAATAAACTTCGATGAAGAAATCTCAAAACCAGCTTTA
More
|
||||||||||
| CDS seq | ATGCACGCCATGGGGCCCTTCATCGGCCAGGGCGGCTCCGCGGGGCTGGAGGACGCCGTCGTGCTCGCCCGCTCGCTGTCGTCGGCGGCGGCCGGCGATGGCCGGGCGCCGCCGCGTCAGCAGCTGCGCGACGACGCCGTCGGCGCGGCGATAGACGAGTACGTCGCGGAGAGGCGGCGGAGGGCGACGACGCTGTGCCTGCACAGCTTCGCCATCGGGACGTTGCTGACGACGAGGTGGCTCGCCGTGAAGCTCGCGTGCGTCGCCGTCCTGGCGCTCCTCGGCGGCGACTCGCGCCGTGATGCGGACTACGACTGCGGCCGCCTCTAG |
||||||||||
| Protein seq | MHAMGPFIGQGGSAGLEDAVVLARSLSSAAAGDGRAPPRQQLRDDAVGAAIDEYVAERRRRATTLCLHSFAIGTLLTTRWLAVKLACVAVLALLGGDSRRDADYDCGRL |
||||||||||
| Function | Monooxygenase 1 [UniProtKB/Swiss-Prot:O81815] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0560700 | OsNip_02t0560700-00 | Chr02 | 21273295 | 21273834 | + | RAP2018-11-26 | ||
| CDS seq | ATGCACGCCATGGGGCCCTTCATCGGCCAGGGCGGCTCCGCGGGGCTGGAGGACGCCGTCGTGCTCGCCCGCTCGCTGTCGTCGGCGGCGGCCGGCGATGGCCGGGCGCCGCCGCGTCAGCAGCTGCGCGACGACGCCGTCGGCGCGGCGATAGACGAGTACGTCGCGGAGAGGCGGCGGAGGGCGACGACGCTGTGCCTGCACAGCTTCGCCATCGGGACGTTGCTGACGACGAGGTGGCTCGCCGTGAAGCTCGCGTGCGTCGCCGTCCTGGCGCTCCTCGGCGGCGACTCGCGCCGTGATGCGGACTACGACTGCGGCCGCCTCTAG
More
|
|||||||
| Protein seq | MHAMGPFIGQGGSAGLEDAVVLARSLSSAAAGDGRAPPRQQLRDDAVGAAIDEYVAERRRRATTLCLHSFAIGTLLTTRWLAVKLACVAVLALLGGDSRRDADYDCGRL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0560300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g35320 | SBH | 0.114326 | 0.0 | 0.323095 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0559500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021410 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021500 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0021510 | SBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0021200 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0021130 | SBH | 0.0 | 0.0 | 2.543309 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0349100 | SBH | 0.2846815 | 0.30031 | 0.018315 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020860 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0375800 | SBH | 1.066333 | 0.2850455 | 0.2228545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021320 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0021060 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021520 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0021210 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0021050 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G021480 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0021260 | SBH | 0.0 | 0.0 | 2.268538 |
