Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0555100 | OGI:02060340 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:20966831-20969331 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGCGCATGCGCCGCCTTCTCACTCCGCCATGGCCGGCGGCGGCGGCGGCTGCTCCGGCCAGCGCCGCCGCCGCCTCCGCCGTCACAGTAGAGGCGGTGCTGGCCCTGCTGGAGCGCGCGATCTCCGCGGGGGACGTGCGCCGCCTCGGCGCGGCGGTGCACGCGCTCCTCGTCAAGACGGCGCTCACCCACCACACCCTCCTCTCCAACCGCCTCGTCGCGCTCTACGCGCTGCTCCCCACCCCGGCGGCATCGCTCGCCGCCTTCGACGACCTCCCGCACAAGAACGCGCACTCGTACAACTCCCTTCTGGCGGCGCTGGCCCGGGGCCGCGGCACCCTCCCCGACGCCCTCCGCCTGCTCGACGGAATGCCGCCCGCCTCCCGCAACGTCGTCTCCTACAACACCGTCATCTCGTCGCTCGCGCGTCACGGCCGCGAGTCTGAGGCGCTCCGCGTGTTCGCCCAGCTGGCCAGGGACAGGGGCCTGGGGCAGCAGCAGGTGGCCATCGACCGGTTCACGGTGGTCAGCGCCGCGAGCGCGTGCGCGGGGCTCCGGGATGCGAGGCACCTCCGCGAGTTGCATGGCGCGGTGGTGGTGTCGGGTATGGAGGTGACTGTCATCATGGCCAACGCAATGGTGGACGCCTACAGCAAGGCCGGGAGGGTGGAGGATGCACGGGGGGTATTCGACCAGATGACCATCCGTGACTCGGTTTCTTGGACATCGATGATTGCAGGGTATTGCCGGGCAAGCATGCTTGACGATGCTGTGCAAGTATTCGACATGATGCCAGCGCAGGACGCCATAGCATGGACAGCACTCATCTCTGGGCATGAGCAGAATGGGGAGGAGGAGATCGCTCTCGAGCTTTTTGAAAGGATGACAGGTGAGGGGGTAGTGCCAACCCCCTTTGCCCTCGTGTCATGTCTGGGTGCGTGCGCCAAGGTTGGTCTTGTCGCCCGAGGGAAGGAAGTGCATGGCTTCATCTTGCGCAGGAGCATCGGTTCAGACCCTTTCAACGTTTTCATCCACAATGCCCTTATTGACATGTATTCCAAGTGTGGCGACATGGTAGCGGCCATGGCGGTGTTTGACAGGATGCTTGAGAGGGACATCATCTCTTGGAACTCCATGGTGACAGGGTTCTCGCACAATGGCCAGGGAAAGCAGTCACTTGCAGTGTTTGAGAGGATGCTTAAAGATGAAGTACAACCAACCTATGTCACTTTTCTCGCTGTCCTCACAGCTTGCAGCCATGCTGGTCTAGTCTCTGATGGCCGCCGGATTCTTGAATCAATGCAGGACCATGGTGTTGAACCAAGAGCTGAACACTACGCCGCTTTCATTGATGCTCTTGGTCGGAATCGCCAGCTGGAAGAAGCAAGTGAGTTCATCAAAGGCTTGTCCTCCAAGATCGGTCTGGGTACAACTGGGTCATGGGGGGCCCTCCTTGGTGCATGTCATGTTCATGGCAATATTGAGATCGCGGAAGAAGTTGCCGAGGCCCTGTTCCAGTTGGAGCCTGAGAACAGTGGTCGGTATGTCATGTTGTCAAACATATACTCAGCAGCAGGACAGTGGGACGATGCCCGCCAGGTCAGGGCTCTCATGAAGGGGAAAGGATTGAGGAAGGACCAAGCTTATAGTTGGATAGAGGTGCAGAGAGCAAAACACATGTTCGTCGCCGATGACACATCTCACCATGAGGCGAATGAAATATATGAGATGCTGGACAAGCTTTTTCATCACATGTTCATTATAGGGGGTAATGTTGAGGAGCTTATAGTTGGATAGAGGTGCAGAGAGAAAAACACTTGTTTGTCGCTGCTAACACATCTCACTGTGACGCAAATGAAATATATGAGATGCTGGACAAGCTTTTTCATCACGTGCTCGGGGTAATGTTGAGGACAAGCATGGCAATTTTGTTTTGTGCTGAAAGATACATCCTCTGGAATGAAACAATTGCTTTAGCATTGCAAGAACAAGGCCATTGGTCTCAGGCATGAGGGATGAAGCCCACTGATTTGCCTTCAGCATCCTTGGTATGGCAGATTGGTGGTGTGTTTCAAGGATGCTGCAAAGGAGCGTCAGAGTCCAAAATGTGGTTATTGTGTTTCTTTGAGATTGCAATCACAAATAAACTCGTACGATTTTGATTCGTTTGGAACTTGGCATCCTGAAGGATCAATTTTTCACTTGAAGATGACAACTGACAGGACAAATTCAGAGTCCAGAACTTTGGGCCATTGCCTCGGCAGAGCTTTACAATTGCCTGATCCAGCTCAATTTGTGAGTTTGAAGAATCAACTACTGAGTCATTTACTCATTTTCCCCCCTCTGCAATAGAGGTGTTGATTTCCAATCTTTGCCACGATGATCGTATATTTGGATTTGGGAAGGTGGTAGGATAGAAGTCTTCAGCTTTCCACTCTTTGTAATTTGTAGTCTTTGTTATTGAACGTTCAGAGTACATATATAATATAATTTTTGTGTGC
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| CDS seq | ATGCGCCGCCTTCTCACTCCGCCATGGCCGGCGGCGGCGGCGGCTGCTCCGGCCAGCGCCGCCGCCGCCTCCGCCGTCACAGTAGAGGCGGTGCTGGCCCTGCTGGAGCGCGCGATCTCCGCGGGGGACGTGCGCCGCCTCGGCGCGGCGGTGCACGCGCTCCTCGTCAAGACGGCGCTCACCCACCACACCCTCCTCTCCAACCGCCTCGTCGCGCTCTACGCGCTGCTCCCCACCCCGGCGGCATCGCTCGCCGCCTTCGACGACCTCCCGCACAAGAACGCGCACTCGTACAACTCCCTTCTGGCGGCGCTGGCCCGGGGCCGCGGCACCCTCCCCGACGCCCTCCGCCTGCTCGACGGAATGCCGCCCGCCTCCCGCAACGTCGTCTCCTACAACACCGTCATCTCGTCGCTCGCGCGTCACGGCCGCGAGTCTGAGGCGCTCCGCGTGTTCGCCCAGCTGGCCAGGGACAGGGGCCTGGGGCAGCAGCAGGTGGCCATCGACCGGTTCACGGTGGTCAGCGCCGCGAGCGCGTGCGCGGGGCTCCGGGATGCGAGGCACCTCCGCGAGTTGCATGGCGCGGTGGTGGTGTCGGGTATGGAGGTGACTGTCATCATGGCCAACGCAATGGTGGACGCCTACAGCAAGGCCGGGAGGGTGGAGGATGCACGGGGGGTATTCGACCAGATGACCATCCGTGACTCGGTTTCTTGGACATCGATGATTGCAGGGTATTGCCGGGCAAGCATGCTTGACGATGCTGTGCAAGTATTCGACATGATGCCAGCGCAGGACGCCATAGCATGGACAGCACTCATCTCTGGGCATGAGCAGAATGGGGAGGAGGAGATCGCTCTCGAGCTTTTTGAAAGGATGACAGGTGAGGGGGTAGTGCCAACCCCCTTTGCCCTCGTGTCATGTCTGGGTGCGTGCGCCAAGGTTGGTCTTGTCGCCCGAGGGAAGGAAGTGCATGGCTTCATCTTGCGCAGGAGCATCGGTTCAGACCCTTTCAACGTTTTCATCCACAATGCCCTTATTGACATGTATTCCAAGTGTGGCGACATGGTAGCGGCCATGGCGGTGTTTGACAGGATGCTTGAGAGGGACATCATCTCTTGGAACTCCATGGTGACAGGGTTCTCGCACAATGGCCAGGGAAAGCAGTCACTTGCAGTGTTTGAGAGGATGCTTAAAGATGAAGTACAACCAACCTATGTCACTTTTCTCGCTGTCCTCACAGCTTGCAGCCATGCTGGTCTAGTCTCTGATGGCCGCCGGATTCTTGAATCAATGCAGGACCATGGTGTTGAACCAAGAGCTGAACACTACGCCGCTTTCATTGATGCTCTTGGTCGGAATCGCCAGCTGGAAGAAGCAAGTGAGTTCATCAAAGGCTTGTCCTCCAAGATCGGTCTGGGTACAACTGGGTCATGGGGGGCCCTCCTTGGTGCATGTCATGTTCATGGCAATATTGAGATCGCGGAAGAAGTTGCCGAGGCCCTGTTCCAGTTGGAGCCTGAGAACAGTGGTCGGTATGTCATGTTGTCAAACATATACTCAGCAGCAGGACAGTGGGACGATGCCCGCCAGGTCAGGGCTCTCATGAAGGGGAAAGGATTGAGGAAGGACCAAGCTTATAGTTGGATAGAGGTGCAGAGAGCAAAACACATGTTCGTCGCCGATGACACATCTCACCATGAGGCGAATGAAATATATGAGATGCTGGACAAGCTTTTTCATCACATGTTCATTATAGGGGGTAATGTTGAGGAGCTTATAGTTGGATAG
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| Protein seq | MRRLLTPPWPAAAAAAPASAAAASAVTVEAVLALLERAISAGDVRRLGAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESMQDHGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWDDARQVRALMKGKGLRKDQAYSWIEVQRAKHMFVADDTSHHEANEIYEMLDKLFHHMFIIGGNVEELIVG |
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| Function | Pentatricopeptide repeat-containing protein At2g13600 [UniProtKB/Swiss-Prot:Q9SIT7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0555100 | OsNip_02t0555100-01 | Chr02 | 20966831 | 20969331 | + | RAP2018-11-26 | ||
| CDS seq | ATGCGCCGCCTTCTCACTCCGCCATGGCCGGCGGCGGCGGCGGCTGCTCCGGCCAGCGCCGCCGCCGCCTCCGCCGTCACAGTAGAGGCGGTGCTGGCCCTGCTGGAGCGCGCGATCTCCGCGGGGGACGTGCGCCGCCTCGGCGCGGCGGTGCACGCGCTCCTCGTCAAGACGGCGCTCACCCACCACACCCTCCTCTCCAACCGCCTCGTCGCGCTCTACGCGCTGCTCCCCACCCCGGCGGCATCGCTCGCCGCCTTCGACGACCTCCCGCACAAGAACGCGCACTCGTACAACTCCCTTCTGGCGGCGCTGGCCCGGGGCCGCGGCACCCTCCCCGACGCCCTCCGCCTGCTCGACGGAATGCCGCCCGCCTCCCGCAACGTCGTCTCCTACAACACCGTCATCTCGTCGCTCGCGCGTCACGGCCGCGAGTCTGAGGCGCTCCGCGTGTTCGCCCAGCTGGCCAGGGACAGGGGCCTGGGGCAGCAGCAGGTGGCCATCGACCGGTTCACGGTGGTCAGCGCCGCGAGCGCGTGCGCGGGGCTCCGGGATGCGAGGCACCTCCGCGAGTTGCATGGCGCGGTGGTGGTGTCGGGTATGGAGGTGACTGTCATCATGGCCAACGCAATGGTGGACGCCTACAGCAAGGCCGGGAGGGTGGAGGATGCACGGGGGGTATTCGACCAGATGACCATCCGTGACTCGGTTTCTTGGACATCGATGATTGCAGGGTATTGCCGGGCAAGCATGCTTGACGATGCTGTGCAAGTATTCGACATGATGCCAGCGCAGGACGCCATAGCATGGACAGCACTCATCTCTGGGCATGAGCAGAATGGGGAGGAGGAGATCGCTCTCGAGCTTTTTGAAAGGATGACAGGTGAGGGGGTAGTGCCAACCCCCTTTGCCCTCGTGTCATGTCTGGGTGCGTGCGCCAAGGTTGGTCTTGTCGCCCGAGGGAAGGAAGTGCATGGCTTCATCTTGCGCAGGAGCATCGGTTCAGACCCTTTCAACGTTTTCATCCACAATGCCCTTATTGACATGTATTCCAAGTGTGGCGACATGGTAGCGGCCATGGCGGTGTTTGACAGGATGCTTGAGAGGGACATCATCTCTTGGAACTCCATGGTGACAGGGTTCTCGCACAATGGCCAGGGAAAGCAGTCACTTGCAGTGTTTGAGAGGATGCTTAAAGATGAAGTACAACCAACCTATGTCACTTTTCTCGCTGTCCTCACAGCTTGCAGCCATGCTGGTCTAGTCTCTGATGGCCGCCGGATTCTTGAATCAATGCAGGACCATGGTGTTGAACCAAGAGCTGAACACTACGCCGCTTTCATTGATGCTCTTGGTCGGAATCGCCAGCTGGAAGAAGCAAGTGAGTTCATCAAAGGCTTGTCCTCCAAGATCGGTCTGGGTACAACTGGGTCATGGGGGGCCCTCCTTGGTGCATGTCATGTTCATGGCAATATTGAGATCGCGGAAGAAGTTGCCGAGGCCCTGTTCCAGTTGGAGCCTGAGAACAGTGGTCGGTATGTCATGTTGTCAAACATATACTCAGCAGCAGGACAGTGGGACGATGCCCGCCAGGTCAGGGCTCTCATGAAGGGGAAAGGATTGAGGAAGGACCAAGCTTATAGTTGGATAGAGGTGCAGAGAGCAAAACACATGTTCGTCGCCGATGACACATCTCACCATGAGGCGAATGAAATATATGAGATGCTGGACAAGCTTTTTCATCACATGTTCATTATAGGGGGTAATGTTGAGGAGCTTATAGTTGGATAG
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| Protein seq | MRRLLTPPWPAAAAAAPASAAAASAVTVEAVLALLERAISAGDVRRLGAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESMQDHGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWDDARQVRALMKGKGLRKDQAYSWIEVQRAKHMFVADDTSHHEANEIYEMLDKLFHHMFIIGGNVEELIVG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.195237 | 0.199889 | 0.474813 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0469400 | SBH | 1.760141 | 2.541341 | 0.360990 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g34960 | RBH | 0.131924 | 0.134335 | 0.122331 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0555100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021060 | RBH | 0.100836 | 0.0 | 0.609721 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021140 | RBH | 0.0 | 0.0 | 0.507467 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0021130 | RBH | 0.440414 | 0.0 | 0.877415 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020870 | RBH | 0.037852 | 0.203510 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020800 | RBH | 0.0 | 2.749282 | 1.200377 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0345800 | RBH | 0.626509 | 1.7638305 | 0.689958 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020530 | RBH | 0.047445 | 0.085137 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0371100 | RBH | 0.733983 | 1.781152 | 4.5546325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021010 | RBH | 0.043827 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020750 | RBH | 0.160291 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021200 | RBH | 0.0 | 6.703013 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0020890 | RBH | 0.0 | 0.0 | 0.122192 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020710 | RBH | 0.062668 | 0.077989 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G021150 | RBH | 0.083218 | 0.0 | 0.187721 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020900 | RBH | 0.251418 | 2.098219 | 0.0 |
