Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0549200 | OGI:02059520 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:20623193-20626259 | ||||||||
| Gene Symbol | RLCK71, OsRLCK71, RLCK73, OsRLCK73 | ||||||||||
| DNA seq | ACATCATATGTCCTCACCAGAATCCAAAATTTTCATCACACCAAACCATCCACCGCTCATCACTTTTCCCCCAAGCAAATCCAATCTTTGCAACCACATTGTTGTTGTTTCTCCCCCACAACATCCTCTTCCTTTTCTTTCCTTTTTTTTTTCCCGTTTTTGCGTCCAATCGCCCAACGAATCCAACCAAATTCGCTGTTCTTGCCTTCTTCTTTTGTGTTCAAGAATCCAAAAGTTGATGTTGTTTTGAGCTCAATTTTGCTCGAGAAAAGCTCGAGGAAGGTGCTCCCATGTCGGACTCGGAGCTGTCCCAGAGCACGGTGGTGTTCGGGCTCCGCATGTGGGTGCTCGTCGGCGTGGCCGTCGGCGCGGCGTTCGTGCTGTTCCTCGTGCTCCTCTCCGTGCTATGCCTCCTCGCTTCTCGCCGCCGCCGGCGGCGGCGGGGGCCGAACACCTCCCCGGTGCAGCAGCTCCCCGTCTCCGCCCCGCCCAAGAACCCCCAGAAGGTCAAGGCGCCCAAGGACATCCAGGAAGTCCCCGCCCAGGCCACCGCCGCCGCCGCGGCGAAGACGCCGCTCGCCCAGGTGCTCCAGATGCCCGCGCCGCCGCCGCCGCCGCCGCCGATGGCGGCGGCGGCACCGCCTCCGGAGACCGTCCAGATCGCCACCGGCAAGGAGCACCGCATTACGTACCCGGAGCCGCCGCACCGCAGCGGCTCGTCGTCGCACGGCAGCGGCGAGGCGCCGTCGGTGCCGGAGGTGTCCCACCTCGGGTGGGGCCACTGGTACACGCTCAAGGAGCTGGAGGCGGCGACCGAGATGTTCGCCGACGAGAACGTGATCGGCGAGGGCGGGTACGGCATCGTGTACCACGGCGTGCTCGAGAACGGCACCCAGGTCGCCGTCAAGAACTTGCTCAACAACAGGTACCCTACCACTAATAGTAGTCAACTCCGTTGCACTGAAATTACTACAGCTACCCAACTTGATTGTCTTCGTGTGATTGCCACGGGGATTGATCATCCAAGAACAGGTTTGTGGCGTCAATTGCGGGTGGATAATGATGCAATTTCTGATAACAGTTACTAGCATTTTGTATTCCAAATTGGGAAGCATGTTTATTATACTACAATTCGGTTACATTTGATGGTAGTACCTTTGGTTGGTAGTACTTTACAGTTACTGAATTCTGTTCAATTTAGCATGTCTGGCTTTCTGTAATGAAATTTAGTAAATTTTGTATGCTTGTCTTGTTGAGTTGATAGGGGGCAAGCAGAGAAGGAATTCAAGGTCGAGGTCGAAGCGATTGGGCGTGTGCGGCACAAGAACTTAGTGCGGCTTCTAGGATACTGCGCAGAGGGCAATCAGAGGTATTTTCTTGCATGTGCACATTATTTGGTAACCTTGTTGAATTGCAAAATCAAAAGGTTTGATAATGTAAATGGTGTTTATGTGGCTCTGACCAGGATGCTTGTGTATGAGTATGTCGACAACGGGAACCTAGAGCAGTGGCTCCATGGGGAAGTTGGACCTGTAAGCCCTCTTTCGTGGGATTCCAGGGTGAAGATTATACTGGGAACGGCGAAAGGGTCTGTGCCTTGTATCTCATTGTTGCGGCCCAGTGAATCTTGCTGCCATTCTATCTGTTTACATAAATTCTGCTGTTCTGTAGGTTAATGTATTTGCATGAGGGACTTGAGCCGAAGGTGGTTCACCGTGATGTCAAGTCGAGCAACATCCTCCTTGATAAGCACTGGAATGCTAAGCTCTCTGATTTTGGTCTAGCAAAGCTTCTAGGCTCAGAGCGGAGTTATGTCACTACACGAGTTATGGGAACTTTCGGGTTAGATTCGGCACACTATGAACATACCCCTAGAATCCCAGATGAATGTTCATGGTTACTAATTTTTTCCACTCTCTACAGGTATGTTGCTCCAGAGTATGCAGGGACTGGAATGCTAAACGAAACAAGCGATGTATATAGTTTTGGAATTCTTATCATGGAAATAATATCCGGTCGAGTACCGGTGGATTATAATAGGCCACCAGGAGAGGTTAGCGACCACATATTGCCAATGCTCGTTTATGATCTTGTTAACTGGATTTATCAAATCTACAGATCAAACTTTTCAGGTTAATTTGGTTGATTGGCTGAAGACGATGGTGAGCACCCGGAATTCTGAGGGGGTCGTTGATCCAAAGATGCCTCAGAAGCCTACCTCTAGAGCTCTGAAGAAGGCTTTGCTAGTGGCATTGCGGTGTGTAGACCCAGATGCTCGTAAGAGGCCAAAGATCGGCCATGTCATTCACATGCTTGAAGTTGATGATTTCCCGTATAGAGATGTAAGTCAATAGAAGTACATATCCACCTGTTTTTCCAGTACTTGCCTTTAATTTTGGGTGACCAATCCCTGTTAACGTTTCATCACCAAGCTTGCTTAACGTTCCTTCAGACCATATGACGGAATCATCTGAAAAGCTGATTTACGATTCTTGATTTGCATGATATCTCACAGTTCAGACACTTCTGAGTTTACCTGCTCTAATTTTCAGGGGAAAGCATTTCTTGTGTTAATCACTAGCAAATGTATTGAGGTTTCAGATTATATTTGAACTTATCCTGAGGGACCATAATCTGTTGGATATTTCATCAGCTCATATTTATGTCGATTTATGTCTACTTTGTGATTTCAGGAACGACGAGGCGCTCGAGCTCCGGTGCAGGCAAGAGTGGCTGACAAACCGGTGGCCATTGAAGCAGGCGACCGTGAATCCGACAGCAGCGGTAACAACAGCGCGCGACAAACCGAACCCTTCAGATGGAGAAACCCAGAGTCCTAGGCATTTGTTCAGAAATTTTCACTTGATTTCTTGAACAAGAACAGTGTCCACCACTGAAGTTGCAAAGTGCTCATTTGTTGCCTTCATCACCATATCATCTGTACATGCCGAAGGAACATATTAGCCCTAGTAATATTTTTTCTCGGTTTATTTATCCGATTAGAGACACTTTTGTATGAAAAAAGTTACTCTTCTAAGTTAAAAGAAATGGAGCGTAATCAAATCCC
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| CDS seq | ATGTCGGACTCGGAGCTGTCCCAGAGCACGGTGGTGTTCGGGCTCCGCATGTGGGTGCTCGTCGGCGTGGCCGTCGGCGCGGCGTTCGTGCTGTTCCTCGTGCTCCTCTCCGTGCTATGCCTCCTCGCTTCTCGCCGCCGCCGGCGGCGGCGGGGGCCGAACACCTCCCCGGTGCAGCAGCTCCCCGTCTCCGCCCCGCCCAAGAACCCCCAGAAGGTCAAGGCGCCCAAGGACATCCAGGAAGTCCCCGCCCAGGCCACCGCCGCCGCCGCGGCGAAGACGCCGCTCGCCCAGGTGCTCCAGATGCCCGCGCCGCCGCCGCCGCCGCCGCCGATGGCGGCGGCGGCACCGCCTCCGGAGACCGTCCAGATCGCCACCGGCAAGGAGCACCGCATTACGTACCCGGAGCCGCCGCACCGCAGCGGCTCGTCGTCGCACGGCAGCGGCGAGGCGCCGTCGGTGCCGGAGGTGTCCCACCTCGGGTGGGGCCACTGGTACACGCTCAAGGAGCTGGAGGCGGCGACCGAGATGTTCGCCGACGAGAACGTGATCGGCGAGGGCGGGTACGGCATCGTGTACCACGGCGTGCTCGAGAACGGCACCCAGGTCGCCGTCAAGAACTTGCTCAACAACAGGGGGCAAGCAGAGAAGGAATTCAAGGTCGAGGTCGAAGCGATTGGGCGTGTGCGGCACAAGAACTTAGTGCGGCTTCTAGGATACTGCGCAGAGGGCAATCAGAGGATGCTTGTGTATGAGTATGTCGACAACGGGAACCTAGAGCAGTGGCTCCATGGGGAAGTTGGACCTGTAAGCCCTCTTTCGTGGGATTCCAGGGTGAAGATTATACTGGGAACGGCGAAAGGGTTAATGTATTTGCATGAGGGACTTGAGCCGAAGGTGGTTCACCGTGATGTCAAGTCGAGCAACATCCTCCTTGATAAGCACTGGAATGCTAAGCTCTCTGATTTTGGTCTAGCAAAGCTTCTAGGCTCAGAGCGGAGTTATGTCACTACACGAGTTATGGGAACTTTCGGGTATGTTGCTCCAGAGTATGCAGGGACTGGAATGCTAAACGAAACAAGCGATGTATATAGTTTTGGAATTCTTATCATGGAAATAATATCCGGTCGAGTACCGGTGGATTATAATAGGCCACCAGGAGAGGTTAATTTGGTTGATTGGCTGAAGACGATGGTGAGCACCCGGAATTCTGAGGGGGTCGTTGATCCAAAGATGCCTCAGAAGCCTACCTCTAGAGCTCTGAAGAAGGCTTTGCTAGTGGCATTGCGGTGTGTAGACCCAGATGCTCGTAAGAGGCCAAAGATCGGCCATGTCATTCACATGCTTGAAGTTGATGATTTCCCGTATAGAGATGAACGACGAGGCGCTCGAGCTCCGGTGCAGGCAAGAGTGGCTGACAAACCGGTGGCCATTGAAGCAGGCGACCGTGAATCCGACAGCAGCGGTAACAACAGCGCGCGACAAACCGAACCCTTCAGATGGAGAAACCCAGAGTCCTAG
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| Protein seq | MSDSELSQSTVVFGLRMWVLVGVAVGAAFVLFLVLLSVLCLLASRRRRRRRGPNTSPVQQLPVSAPPKNPQKVKAPKDIQEVPAQATAAAAAKTPLAQVLQMPAPPPPPPPMAAAAPPPETVQIATGKEHRITYPEPPHRSGSSSHGSGEAPSVPEVSHLGWGHWYTLKELEAATEMFADENVIGEGGYGIVYHGVLENGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGNQRMLVYEYVDNGNLEQWLHGEVGPVSPLSWDSRVKIILGTAKGLMYLHEGLEPKVVHRDVKSSNILLDKHWNAKLSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYAGTGMLNETSDVYSFGILIMEIISGRVPVDYNRPPGEVNLVDWLKTMVSTRNSEGVVDPKMPQKPTSRALKKALLVALRCVDPDARKRPKIGHVIHMLEVDDFPYRDERRGARAPVQARVADKPVAIEAGDRESDSSGNNSARQTEPFRWRNPES |
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| Function | Probable serine/threonine-protein kinase At1g01540 [UniProtKB/Swiss-Prot:Q3EDL4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0549200 | OsNip_02t0549200-01 | Chr02 | 20623193 | 20626259 | + | RAP2018-11-26 | ||
| CDS seq | ATGTCGGACTCGGAGCTGTCCCAGAGCACGGTGGTGTTCGGGCTCCGCATGTGGGTGCTCGTCGGCGTGGCCGTCGGCGCGGCGTTCGTGCTGTTCCTCGTGCTCCTCTCCGTGCTATGCCTCCTCGCTTCTCGCCGCCGCCGGCGGCGGCGGGGGCCGAACACCTCCCCGGTGCAGCAGCTCCCCGTCTCCGCCCCGCCCAAGAACCCCCAGAAGGTCAAGGCGCCCAAGGACATCCAGGAAGTCCCCGCCCAGGCCACCGCCGCCGCCGCGGCGAAGACGCCGCTCGCCCAGGTGCTCCAGATGCCCGCGCCGCCGCCGCCGCCGCCGCCGATGGCGGCGGCGGCACCGCCTCCGGAGACCGTCCAGATCGCCACCGGCAAGGAGCACCGCATTACGTACCCGGAGCCGCCGCACCGCAGCGGCTCGTCGTCGCACGGCAGCGGCGAGGCGCCGTCGGTGCCGGAGGTGTCCCACCTCGGGTGGGGCCACTGGTACACGCTCAAGGAGCTGGAGGCGGCGACCGAGATGTTCGCCGACGAGAACGTGATCGGCGAGGGCGGGTACGGCATCGTGTACCACGGCGTGCTCGAGAACGGCACCCAGGTCGCCGTCAAGAACTTGCTCAACAACAGGGGGCAAGCAGAGAAGGAATTCAAGGTCGAGGTCGAAGCGATTGGGCGTGTGCGGCACAAGAACTTAGTGCGGCTTCTAGGATACTGCGCAGAGGGCAATCAGAGGATGCTTGTGTATGAGTATGTCGACAACGGGAACCTAGAGCAGTGGCTCCATGGGGAAGTTGGACCTGTAAGCCCTCTTTCGTGGGATTCCAGGGTGAAGATTATACTGGGAACGGCGAAAGGGTTAATGTATTTGCATGAGGGACTTGAGCCGAAGGTGGTTCACCGTGATGTCAAGTCGAGCAACATCCTCCTTGATAAGCACTGGAATGCTAAGCTCTCTGATTTTGGTCTAGCAAAGCTTCTAGGCTCAGAGCGGAGTTATGTCACTACACGAGTTATGGGAACTTTCGGGTATGTTGCTCCAGAGTATGCAGGGACTGGAATGCTAAACGAAACAAGCGATGTATATAGTTTTGGAATTCTTATCATGGAAATAATATCCGGTCGAGTACCGGTGGATTATAATAGGCCACCAGGAGAGGTTAATTTGGTTGATTGGCTGAAGACGATGGTGAGCACCCGGAATTCTGAGGGGGTCGTTGATCCAAAGATGCCTCAGAAGCCTACCTCTAGAGCTCTGAAGAAGGCTTTGCTAGTGGCATTGCGGTGTGTAGACCCAGATGCTCGTAAGAGGCCAAAGATCGGCCATGTCATTCACATGCTTGAAGTTGATGATTTCCCGTATAGAGATGAACGACGAGGCGCTCGAGCTCCGGTGCAGGCAAGAGTGGCTGACAAACCGGTGGCCATTGAAGCAGGCGACCGTGAATCCGACAGCAGCGGTAACAACAGCGCGCGACAAACCGAACCCTTCAGATGGAGAAACCCAGAGTCCTAG
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| Protein seq | MSDSELSQSTVVFGLRMWVLVGVAVGAAFVLFLVLLSVLCLLASRRRRRRRGPNTSPVQQLPVSAPPKNPQKVKAPKDIQEVPAQATAAAAAKTPLAQVLQMPAPPPPPPPMAAAAPPPETVQIATGKEHRITYPEPPHRSGSSSHGSGEAPSVPEVSHLGWGHWYTLKELEAATEMFADENVIGEGGYGIVYHGVLENGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGNQRMLVYEYVDNGNLEQWLHGEVGPVSPLSWDSRVKIILGTAKGLMYLHEGLEPKVVHRDVKSSNILLDKHWNAKLSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYAGTGMLNETSDVYSFGILIMEIISGRVPVDYNRPPGEVNLVDWLKTMVSTRNSEGVVDPKMPQKPTSRALKKALLVALRCVDPDARKRPKIGHVIHMLEVDDFPYRDERRGARAPVQARVADKPVAIEAGDRESDSSGNNSARQTEPFRWRNPES
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.292794 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0430000 | RBH | 0.175264 | 0.718953 | 3.771973 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g34430 | RBH | 0.000000 | 0.000000 | 0.061888 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0549200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0020690 | RBH | 0.000000 | 23.696850 | 5.517277 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0020780 | RBH | 0.0 | 5.939778 | 1.123852 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0020760 | RBH | 0.0 | 31.720692 | 4.672395 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020510 | RBH | 0.0 | 0.745457 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020430 | RBH | 2.555416 | 33.635326 | 13.088709 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0340500 | RBH | 2.659893 | 8.8883285 | 0.921442 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020140 | RBH | 0.0 | 2.777117 | 0.821704 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0365400 | RBH | 2.8381795 | 1.4889835 | 5.003996 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0020640 | RBH | 0.000000 | 0.295251 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020380 | RBH | 0.074910 | 10.701807 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0020810 | RBH | 0.0 | 31.272291 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0020510 | RBH | 0.000000 | 2.203205 | 0.814704 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020330 | RBH | 0.0 | 19.130791 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G020780 | RBH | 0.0 | 10.793768 | 3.544651 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020520 | RBH | 0.0 | 32.102409 | 6.039637 |
