Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0522300 | OGI:02049160 | 5/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:19044957-19050756 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CGGTATATTCTGTACGCTTGCAGATTTATCTGTGATCATAAGAAATACCAACAAATATCTTGTTGTCTTTGTGTTCACGGCCGAGACTCTGGCCATCTCCATGGTGAGCATTGAAATCACATTGTAGATGCAACATGTGAGGCCATTCTTAAGATCAACGGTCTCATCTCCAGTCAAAAAGCTCCCATACAAGAAGAGCTGAAAAATGAACATTTTGACCGTTAGACAGAGCTAAAGGAATAACAAGAACATCGATTAAAACTAGTCAAAATAATGCAGGTCGACACTGTCATTTCAGTATAGAATTAATTGTACAATGCATTTGTTTTAAAAAAATTGTACAATGTTGAGAACGATTCAATCATTGTATACTACAAGTCAATACCAGTGTATAGAAATCATTGATATTCATCACGAGGGTCTAATGAAAACTCAATTAATCAATACAATTAGTATAGAATTCATTCGTTGTACAACATTGAGAACAAATTCAATTTATGCAAGTGGTATTCATTGTACAATTGGCACCTTGCCAGAACAAATACGCTTATAGTGAGAACAAATTATGCTGGTACTACAATAACTCATAATTGTGAAGCAGGTGCAATACACTTGCAAACTGTGTAGCGCATGTTAACTGATGCTAAAATGACACCAAATATATAACATTGCTATGTTGGATGTTGATTAGACGATTGGGACACTAGGCAACACATATTTTAACATACCAAAAATAAACAGGCAAATGAAGCTTCGGACTTTCTAATAGACCCAGACACAATGAATATTAATGATTTCTAATTTTGTGACTTGAAAACGTGTGGCACATCTACATAGCCTTCAAATTTTTCACAGAAATCATACTCCCGATATCATGATACATCAAAGGTCTAAGTGCCAACTTGTACACTTATATTTTTTCATAGGTAAATGTAAATCATTATTCAACTCAGATGTGCATGACTACGTGGTTTCAAAATCAGCGTCAATTCAATAAACATATCTATGGTGTGCCCTTATGGCCTAAATTCACTTGTACAAAAACATTTCTACAAGAAACAAGTGCTTTACAAGTTCTTGTACTAGATCGCACCAACCATGCAAGTTCATGGTAATGAGTCAGAATGGAGTCACAAATGGCGAAATACACAGCAAGAATAATCTGGTTATTGAAACTATTATTGAAGCAAAAATAGAACAAATATAAGATATTCCAAATCAGTACAGGCACAAGTGGTTGCATATTAACCCCAACCCTGCAACCAACCCAGTTCAATTTGATCAAGCCAGCATCAACATAATCCTATTTTTGAAGCAAAAACACACCAAAAAACTAAGACATTCCAAATGAGTTTGTGCACAAATGGTTGCAGATTAATCCCCATCTTCAACCAACCTGCCAATATCAATTTCACAGATCTCATCCCAGACTTATCAATTCTCGGTTCTGTGATCGAATAGTAGATATACATTTTAATCTGTCACGTATCACTAGAACCCTACTAAACAACAACCAACACAATCTGGAATTCACAGCCATTAAACAAAGAAAAAACACACACAAGTTGACACATAGAAACTACAAGATGAAAGATCAAGTACTGCAGACCAAATTAAACCGTACAAAATTATCACTAGGAACCTCGTAGTACGAAATTGGTACATTCTAACAAAAAAAACAACCACTAAACTAACAATAGAATATCGTCTGTAACAATTGAAACATCATAGATTGACCACCCATGGAGCAAGCAGAAAAACCCAATCTACTTCTAATCACAAACCGAAAACTATCAGATTGAACACCCATAACAAAAGAAAAAATGCCCTTCGATCACAAACCAAGACCTAATAGATTGACAACCCATTGATCGAACAAAAAAAACCCAATTGACTCTTCGATCACAAACCGAAACCTGAAAAATTGATCACCGATTGATCGAACAGAGTAACCCAACCAGGTCTTACATCAGCAATTCCCCGTCATCCAACACATGCATGAAAAAAACAAAAGGTAAATAAAATGCACTCTCCATTCACCAACTCTTCGAGGAAGAGTAAATCTTATTCCAGCTCTCCAATCCAACCTGAAATCAAACCACCAAAACAATAGTAAACCTGCAAAACAATTCCACAAACACACCAGCACAATTCTGCCACGCCAAGAAACACAAACCGACACAAATACAACCCATTGATGGAACAGATAACCTAATTGACTCTTCGATCACAATCCTAATCCTGACAGATTTCCACTCATGGATAGAAACAAAAAAAATACCCAAAATACTCTTTGATCACTGATTCACCGCCATCCAACACACGCTAGAAAACTGAACAAGGTTAAACGCACTCTCCACTCAGCAACATCTTCCGCTGCCTCCAACCCAACGCAAAATCAAATCAAATCAAAACTTAGTAAACCCACAGATCAATTCTACTAACACACTGGCCTGAATCCGCCCCCAATTCGCCACACGGAGATAACTCCAACCTACACTACGCACAACCAAACCCAGATTCTACTCAAACCACACCACAGTAACAAATCGATCAGGCAAGACAAGAACATGTCCTACTCAAACTATTCCAGACCATCAAATGAACAATAGAAGCAAGCGAGACAAGATTTTTTCTAGATACTGAAAAGCATGCGGAAAACTGGTCATACTTACCATCGCACTGTTCTTGCAAGAGACCTTCTAGCCAACGCTGAAGTTCTTGCCAACAAGATCTACAAAAGCACTAGAAAATAGCAGCAGAAATCAACGAGTCCCTTCCCAAAATGATAAACCTTGAGTTTCACTCGACACTCAAGGCTGTTGTTGGCCTGATCTTTCGATGAGAGGATAAGTCGATAGGATGGAGTGGCGTTGGCGGTCCGACTACATCTATCAAGGGATGTTGCATCTTAGCAATCATTACACCAAATCTCTATGGAATGCACGATCAGCCCAACCACAAGGGTAATTGTTCCTGCAAGCAATCGAGAACTAGCAAGAACAAGATGAACAAGCAACTCAATTTGCGAATCAAAGATGATGGATCAGATCAACAGAAGTAGCACAAGTGGAGTTCAGCAACAAGAAATCCGGGGATCTAACTGGTCATGGGATTAACTCGGCCAAGTAGCGACGCTATACTTTGATCTAAACAAAGCCCAAGTGTTCTTGGCGGCGGCTAAAGGTATAAGAAGAGGGGGAGAACGACCACAGGGGTGTTGGTGTCGTGCTCTAACCCTAGGACGCACCCCTAATGGGCCCAACTTGATATACAGCACATTGGGCCCAAATGAGGTGACGCAACATCGTGGACAGAAAAGTACTCGACAGTAAAATGATGATTGCAGCTGCTCCAGATCAGATATGGACATGGGAATGGATCCATTTGAAAGTAGACTTGATAAGCTTTCCATGAAGTACTTGCACGCCCAAATCGGAGTTCGCATGAAGTCGTGCCGGCCGTCAGATGTTGGCGCTATCCTGCAGTCCGAATCCACCCCGCGCGAATCCTCTCCCCGTTTGGATCCTCCCCATCGTTCCTGAGTAAAACAAGAGTGCACGCATCTCCGGGGTATAAACAAGAAGAACATGAATTCAAGAATGAACTCACCTGATAGTTGAGTTGACGTGCACGAGCGCGGGTAATAGGATCATGAAGTTGTACTTGTGGGGACGTGGATGTATCGATGGTGTTGATGTCCTCATCATCCTCCCCTTCTTGCATTGGAGTCGTCCTCGACTTAAGCTCATCTTCTTCTCCCAAATACGGTTTCAAATTTGCAATGTGAAATGTGGGACTAACCCCAAAATCTACAGGCAAATCAAGCTTATATGCATTCTCATTAATCTTTGCTAATACTTTAAAAGGTCCATCAGCTCTAGGCATCCATTTAGATTTTCTCAAATTAGGAAACCATTCTTTTCGCAAACGCAACCAAACCAAATCTCCAGGTTCAAAATTCAATTCCTTTCTATCTTTGTTACCAACAAGTTGATCTGATGCTCAATTTCACGCACCGGTGGCAGCCCTGGTGGTACGTCCTTGGGAAACACATCCTAATACTTCTGCAAAAAATTAGTGACCACAAGAAGAAAAGAGATAGGCATATTCTCAAAAGGAAACAAGGCCTCTTTACAAATGAGAGCATAGCAAATAGTGTCACTCGTATCCAAATTGACAATATCAGATTTAGTGGCAAGCAAACAAGGACCTTTCGATTTAATCACATTGTCCTTACCATGTTCAGATTTAGAATCTTTCTTGTTATGTTGTACAAGTTCTTTTGCTACAATCTGATTTTCACTTTTAGCATGCTCAACATTTTTCTCTTTCTTAGCTCTAGCAACATCATTCTCAAAAACAGCTTCAAGAGTCATAGGATGCAACACAATTTTTTTTCTATTATGCACAAAGGAGTATTGATTTTGTTCTACCATGATGCAACGTGTTTTTATCATATTGTGAAAGTCTACCCAACAGCAAGGAGCAAGGAGCAAGCATGCATAGGTACGACATCGCAATCAACAAAATCACAGTAATAACCAATTGCAAAATTTAATCTCACCAATTGTGTTACCTTAATGCGGCCACTGTTGTTGAACCACTGAATGTAGTATTAGTATGGGTAGAGATGTGGTTTTGTGAAATTTACTCTAAAAGAAATTACCTTCTAAAAGAAATTACCTGCTACATTGGCATTGTCACATTTTCTAATCAGACATACGCAAATTCTAGGATTTCATTTTGTATTCAACAGTTTCAAAGCAATAATGTTGATAATTCCTTCATCAAGTTATACTCCCTCCGTCCCTAAATATAAGAGATTTTAGTGAGATATGATACATCCTAGTTCAACGAATATAGCCTATAGCATGTGTCACATCTTAACTAACTAAAAGATTAGTATTTTTCCTTTCGTCACAAATTTTTCATCCGTAAATGTCTGACTGAGCGGTGCCCTCTCTCTCCGTGTGAACGCAATCGTGTACAGCGGCCAAAGAAAAAAAATTCTGAGAGGATACAAAATTATAATTGGAGGACAAATCACAACATCAAAACCGACCGATAATCCCAGAAAATCAGTTTCCCATTCGCTGTTACAAGATCGACACTACAAAGAAATACACAAACAAATCCCAAATCCCTAAAAACTAAAGCAGAAGCACCTTCTTCCGCTTCATCTGTCAACGAGCGTCCGCTCTGAACATCCCACAACCAATCCCAAATCATCACAAATCTAACCCAAAAACTAAATCCCAATCCAATCGGAATCATTACAAAATCATCCCAAAATAAATCAAGCACAGGAGACAATCCAATAATCACATCACAAAATAAATCACACATAAGATGAGAGAAGAGGTGGAAATCACAAAATAAATCACATCACATAGGATATGAGAGGAGAGAGAAGGGTGAGAGGGAGGCCGCCGCCGCTCCTCGCCGCCATGGAGATCCTGAGCCGTGCCGCGCCTCTGCGTCGAGAAGCCGCAGCTCAGCCGCTGGGCCGGGAGACGCTGACCAGCCCCTGCGCCACTGCTGCCTCTGGACCAAGAGGGAGAGGGAGGGGTGAGAGGGAGGCCGCTGCCGCTCCTCGCCGTCGTGGAGGTCCTGAGCCGCCGCGCCGCTGGGCAGCCGCTGCGTCGAGGAGCCGCAATGCAGCCGCTGGGCCGGGAGCCGCTAACCCGCCCCTGCGCCGCTGCTGCCTCTGGACCAAGAGGGAGAGGGAGGAGGAAGGCGGCGATGAGGCTGAGGAGGCGTGGCCACGTGACGGGGGCCAGTGGCAGTAGGTGGATGC
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| CDS seq | GCATCAGATCAACTTGTTGGTAACAAAGATAGAAAGGAATTGAATTTTGAACCTGGAGATTTGGTTTGGTTGCGTTTGCGAAAAGAATGGTTTCCTAATTTGAGAAAATCTAAATGGATGCCTAGAGCTGATGGACCTTTTAAAGTATTAGCAAAGATTAATGAGAATGCATATAAGCTTGATTTGCCTGTAGATTTTGGGGTTAGTCCCACATTTCACATTGCAAATTTGAAACCGTATTTGGGAGAAGAAGATGAGCTTAAGTCGAGGACGACTCCAATGCAAGAAGGGGAGGATGATGAGGACATCAACACCATCGATACATCCACGTCCCCACAAGTACAACTTCATGATCCTATTACCCGCGCTCGTGCACGTCAACTCAACTATCAGGTGAGTTCATTCTTGAATTCATGTTCTTCTTGTTTATACCCCGGAGATGCGTGCACTCTTGTTTTACTCAGGAACGATGGGGAGGATCCAAACGGGGAGAGGATTCGCGCGGGGTGGATTCGGACTGCAGGATAG
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| Protein seq | ASDQLVGNKDRKELNFEPGDLVWLRLRKEWFPNLRKSKWMPRADGPFKVLAKINENAYKLDLPVDFGVSPTFHIANLKPYLGEEDELKSRTTPMQEGEDDEDINTIDTSTSPQVQLHDPITRARARQLNYQVSSFLNSCSSCLYPGDACTLVLLRNDGEDPNGERIRAGWIRTAG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0522300 | OsNip_02t0522300-01 | Chr02 | 19044957 | 19050756 | - | RAP2018-11-26 | ||
| CDS seq | GCATCAGATCAACTTGTTGGTAACAAAGATAGAAAGGAATTGAATTTTGAACCTGGAGATTTGGTTTGGTTGCGTTTGCGAAAAGAATGGTTTCCTAATTTGAGAAAATCTAAATGGATGCCTAGAGCTGATGGACCTTTTAAAGTATTAGCAAAGATTAATGAGAATGCATATAAGCTTGATTTGCCTGTAGATTTTGGGGTTAGTCCCACATTTCACATTGCAAATTTGAAACCGTATTTGGGAGAAGAAGATGAGCTTAAGTCGAGGACGACTCCAATGCAAGAAGGGGAGGATGATGAGGACATCAACACCATCGATACATCCACGTCCCCACAAGTACAACTTCATGATCCTATTACCCGCGCTCGTGCACGTCAACTCAACTATCAGGTGAGTTCATTCTTGAATTCATGTTCTTCTTGTTTATACCCCGGAGATGCGTGCACTCTTGTTTTACTCAGGAACGATGGGGAGGATCCAAACGGGGAGAGGATTCGCGCGGGGTGGATTCGGACTGCAGGATAG
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| Protein seq | ASDQLVGNKDRKELNFEPGDLVWLRLRKEWFPNLRKSKWMPRADGPFKVLAKINENAYKLDLPVDFGVSPTFHIANLKPYLGEEDELKSRTTPMQEGEDDEDINTIDTSTSPQVQLHDPITRARARQLNYQVSSFLNSCSSCLYPGDACTLVLLRNDGEDPNGERIRAGWIRTAG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0522300 | OsNip_02t0522300-03 | Chr02 | 19045383 | 19050727 | - | RAP2018-11-26 | ||
| CDS seq | ATGTTCTTCTTGTTTATACCCCGGAGATGCGTGCACTCTTGTTTTACTCAGGAACGATGGGGAGGATCCAAACGGGGAGAGGATTCGCGCGGGGTGGATTCGGACTGCAGGATAGCGCCAACATCTGACGGCCGGCACGACTTCATGCGAACTCCGATTTGGGCGTGCAAGTACTTCATGGAAAGCTTATCAAGTCTACTTTCAAATGGATCCATTCCCATGTCCATATCTGATCTGGAGCAGCTGCAATCATCATTTTACTGTCGAGTACTTTTCTGTCCACGATGTTGCGTCACCTCATTTGGGCCCAATGTGCTGTATATCAAGTTGGGCCCATTAGGGGTGCGTCCTAGGGTTAGAGCACGACACCAACACCCCTGTGGTCGTTCTCCCCCTCTTCTTATACCTTTAGCCGCCGCCAAGAACACTTGGGCTTTGTTTAGATCAAAGTATAGCGTCGCTACTTGGCCGAGTTAA
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| Protein seq | MFFLFIPRRCVHSCFTQERWGGSKRGEDSRGVDSDCRIAPTSDGRHDFMRTPIWACKYFMESLSSLLSNGSIPMSISDLEQLQSSFYCRVLFCPRCCVTSFGPNVLYIKLGPLGVRPRVRARHQHPCGRSPPLLIPLAAAKNTWALFRSKYSVATWPS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0522300 | OsNip_02t0522300-02 | Chr02 | 19047984 | 19050754 | - | RAP2018-11-26 | ||
| CDS seq | GCATCAGATCAACTTGTTGGTAACAAAGATAGAAAGGAATTGAATTTTGAACCTGGAGATTTGGTTTGGTTGCGTTTGCGAAAAGAATGGTTTCCTAATTTGAGAAAATCTAAATGGATGCCTAGAGCTGATGGACCTTTTAAAGTATTAGCAAAGATTAATGAGAATGCATATAAGCTTGATTTGCCTGTAGATTTTGGGGTTAGTCCCACATTTCACATTGCAAATTTGAAACCGTATTTGGGAGAAGAAGATGAGCTTAAGTCGAGGACGACTCCAATGCAAGAAGGGGAGGATGATGAGGACATCAACACCATCGATACATCCACGTCCCCACAAGTACAACTTCATGATCCTATTACCCGCGCTCGTGCACGTCAACTCAACTATCAGGTGAGTTCATTCTTGAATTCATGTTCTTCTTGTTTATACCCCGGAGATGCGTGCACTCTTGTTTTACTCAGGAACGATGGGGAGGATCCAAACGGGGAGAGGATTCGCGCGGGGTGGATTCGGACTGCAGGATAG
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| Protein seq | ASDQLVGNKDRKELNFEPGDLVWLRLRKEWFPNLRKSKWMPRADGPFKVLAKINENAYKLDLPVDFGVSPTFHIANLKPYLGEEDELKSRTTPMQEGEDDEDINTIDTSTSPQVQLHDPITRARARQLNYQVSSFLNSCSSCLYPGDACTLVLLRNDGEDPNGERIRAGWIRTAG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 11.868522 | 8.438924 | 3.111072 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g28400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0522300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0019381 | RBH | 1.490464 | 1.545512 | 4.615173 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0287200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0335600 | RBH | 0.0757965 | 0.062488 | 0.459198 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0018981 | RBH | 0.040489 | 5.177378 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
