Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0521366 | OGI:02055120 | 3/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:19001980-19004365 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTTATTTGTGGACAGAATGTCGAACCCTGCTGCCACCGTTGAGTCACAAGTTGCATTGACACCATCTTCCACTTCCACTCCCACTCCAACCAATGCTCCAAGCGTCGAAATAAATGATTCACAAGGTACAGAAGTAGAACATGATAATAAGAGACTGAAATCTGCAGCATGGCAAGATTTTGTTAAGAAGAAAATAAATGGTGCGTGGAAAGCTGAATGCAAATGGTGTCACAACAAGCTTGGAGCTGAAAGTAGAAATGGGACTAAACATTTGTTAGACCATATTAAAACTTGCAAGTCTAGGCATGCTAGAAAAGGTCTAACACAATCCAATTTGAAGATGGGAATAGATGCAGAAGGGAGGGTTACCGTAGGGAAATATGTCTTTGATCAAGAGGTTGCTAGGAAAGAACTTGCACTGATGATATGCCTCCATGAGTACCCACTTTCTATTGTAGACCATGTTGGTTTTCGTAGGTTTTGTGGTGCATTGCAACCTTTGTTCAAGGTTATGACCAGAAACACAATTAGGAAGGATATTATTGACTTGTTTGGGGTTAACAAGATTTCTATCAGTAATTATTTTCACAAGCTTCAGAGCCGTGTGGCCATTACTACTGATTTATGGACAGCAACTCATCAAAAGAAAGGATACATGGCAATCACCGCTCACTTCATCGATGATGAATGGAAATTGAAGAGTTTTCTTTTGAGGTATATTGAATATGTGCTGCACATTATGCTATATCATGCTTCTTACATTTGTTTAACTCTATACTAATGTTCTCTTGTGGTGTTTTATGTTTTGTAGGTTTATTTATGTACCAGCACCTCATACCGCTGATCTTATAAGTGAAATTATTTATGAGGTTCTTGCTGATTGGAACTTGGAGAGTAGGCTGTCTACTATCACACTTGACAACTGCAGCACCAATGACAAGTTAATGGAGAACCTATTGGGGACAATGCTAGATAAGTTGCCTGCTGATACTCTTATGTTAAATGGTTCATTGCTGCATATGCGTTGTTGTGCACATATTTTGAATTTGATTGTGAAAGATGGAATGACTATCCTAGATAAAATCATTGAGAAGGTTCGTGAGAGTGTTTCATTTTGGACAGCAACACCAAAGAGACATGAGAAATTTGAAAAACAGGCCCAACAAATAAATGTTAAGTATGAGAAAGTAATTGCCCTTGATTGCAAAACTAGATGGAATTCTACTTATCTCATGCTTAGCACTGCAGTTTTGTATCAAGATGTCTTTACAAAACTTGGAACTCGTGAAAAAATGTATACTCCTTATTGTCCATCAAATGATGATTGGAAGTTTGCTAGGGAGCTTTGTGATAGATTGAAGATTTTTTATGATGCAACAGAGGCTTTTTCTGGTAGTAAGTATTGTACTGCAAATCTTTTCTTTCCTAAGGCTTGTGGTATTTATTTGGCTATGAGAAAATGGTCAACTAGTGCTGATCCAAACATTATAACAATGACTAAATTGATGTCAGCCAAATATGAGAAGTATTGGAAGGATGTGCATGGTATTTTGGCTATTGCTAGTGTTTTGGATCCTAGATATAAACTTCATATGTTGAATGCTATGTTTATACAAATCTATGGAGAAGAGGTGGCACTAAGAAAAGTTAATGCTGTGAAAGAAGACTTGTATAAGTTAGTGCTACAATACCAAAATCATGTTGAGGAGGGTGTTGGAACTTCAGATGGAGTTAATGCTTCTTCAAGTGTTGCCCCTCCAGGGGGATTTGATTTGGTGGATGATATATTTGATCAGTATATGTCTGGACAAACTGTTGCCTCTTCCTCACAGATTCGCACTGAGTTAGATTTGTATTTGGAAGAGAAACCGTTGCCTAGGACACAAGATTTTGATATTATCAATTGGTGGAAGTTTGGGGGCATTAGGTACCCAACTTTGAGACAGATTGCCCGGGACATTTTGGCAATCCCTATTACAACAGTAGCATCTGAATCAGCATTTAGTACTGGTGGGAGGGTGATAACTCCAAATCGTAATCAGCTTAAACCTGATCTTGTGGAGGCACTTATGTGTGTGCAAGCATGGGGTCGTGCTGATATGTTAGGTAATTTCATTTTTGCTTTTGTATCGTTCAAGTTTAATTTGTCCTTTCATGTTTCTTCCATTTCATCTAATTGCAAATCACATTATATGTTGATAGCTGAAATTGCTAACAAGACCAATGCATTGAACACGGTACTTGACGATGAATCAGAATCGGTATGTCCTACACTCCCACTTTATTGTTTTTATTACTATAACATACAATGCTTAGTTGCTTCCTCTAATTTTGATTTCAGGAAGCATCTACTGTCACTGAAGCTTGAGGTGGAGATTTCATAA
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| CDS seq | ATGTTATTTGTGGACAGAATGTCGAACCCTGCTGCCACCGTTGAGTCACAAGTTGCATTGACACCATCTTCCACTTCCACTCCCACTCCAACCAATGCTCCAAGCGTCGAAATAAATGATTCACAAGGTACAGAAGTAGAACATGATAATAAGAGACTGAAATCTGCAGCATGGCAAGATTTTGTTAAGAAGAAAATAAATGGTGCGTGGAAAGCTGAATGCAAATGGTGTCACAACAAGCTTGGAGCTGAAAGTAGAAATGGGACTAAACATTTGTTAGACCATATTAAAACTTGCAAGTCTAGGCATGCTAGAAAAGGTCTAACACAATCCAATTTGAAGATGGGAATAGATGCAGAAGGGAGGGTTACCGTAGGGAAATATGTCTTTGATCAAGAGGTTGCTAGGAAAGAACTTGCACTGATGATATGCCTCCATGAGTACCCACTTTCTATTGTAGACCATGTTGGTTTTCGTAGGTTTTGTGGTGCATTGCAACCTTTGTTCAAGGTTATGACCAGAAACACAATTAGGAAGGATATTATTGACTTGTTTGGGGTTAACAAGATTTCTATCAGTAATTATTTTCACAAGCTTCAGAGCCGTGTGGCCATTACTACTGATTTATGGACAGCAACTCATCAAAAGAAAGGATACATGGCAATCACCGCTCACTTCATCGATGATGAATGGAAATTGAAGAGTTTTCTTTTGAGGTTTATTTATGTACCAGCACCTCATACCGCTGATCTTATAAGTGAAATTATTTATGAGGTTCTTGCTGATTGGAACTTGGAGAGTAGGCTGTCTACTATCACACTTGACAACTGCAGCACCAATGACAAGTTAATGGAGAACCTATTGGGGACAATGCTAGATAAGTTGCCTGCTGATACTCTTATGTTAAATGGTTCATTGCTGCATATGCGTTGTTGTGCACATATTTTGAATTTGATTGTGAAAGATGGAATGACTATCCTAGATAAAATCATTGAGAAGGTTCGTGAGAGTGTTTCATTTTGGACAGCAACACCAAAGAGACATGAGAAATTTGAAAAACAGGCCCAACAAATAAATGTTAAGTATGAGAAAGTAATTGCCCTTGATTGCAAAACTAGATGGAATTCTACTTATCTCATGCTTAGCACTGCAGTTTTGTATCAAGATGTCTTTACAAAACTTGGAACTCGTGAAAAAATGTATACTCCTTATTGTCCATCAAATGATGATTGGAAGTTTGCTAGGGAGCTTTGTGATAGATTGAAGATTTTTTATGATGCAACAGAGGCTTTTTCTGGTAGTAAGTATTGTACTGCAAATCTTTTCTTTCCTAAGGCTTGTGGTATTTATTTGGCTATGAGAAAATGGTCAACTAGTGCTGATCCAAACATTATAACAATGACTAAATTGATGTCAGCCAAATATGAGAAGTATTGGAAGGATGTGCATGGTATTTTGGCTATTGCTAGTGTTTTGGATCCTAGATATAAACTTCATATGTTGAATGCTATGTTTATACAAATCTATGGAGAAGAGGTGGCACTAAGAAAAGTTAATGCTGTGAAAGAAGACTTGTATAAGTTAGTGCTACAATACCAAAATCATGTTGAGGAGGGTGTTGGAACTTCAGATGGAGTTAATGCTTCTTCAAGTGTTGCCCCTCCAGGGGGATTTGATTTGGTGGATGATATATTTGATCAGTATATGTCTGGACAAACTGTTGCCTCTTCCTCACAGATTCGCACTGAGTTAGATTTGTATTTGGAAGAGAAACCGTTGCCTAGGACACAAGATTTTGATATTATCAATTGGTGGAAGTTTGGGGGCATTAGGTACCCAACTTTGAGACAGATTGCCCGGGACATTTTGGCAATCCCTATTACAACAGTAGCATCTGAATCAGCATTTAGTACTGGTGGGAGGGTGATAACTCCAAATCGTAATCAGCTTAAACCTGATCTTGTGGAGGCACTTATGTGTGTGCAAGCATGGGGTCGTGCTGATATGTTAGGTAATTTCATTTTTGCTTTTGTATCGTTCAAGTTTAATTTGTCCTTTCATGTTTCTTCCATTTCATCTAATTGCAAATCACATTATATGTTGATAGCTGAAATTGCTAACAAGACCAATGCATTGAACACGGTACTTGACGATGAATCAGAATCGGTATGTCCTACACTCCCACTTTATTGTTTTTATTACTATAACATACAATGCTTAGTTGCTTCCTCTAATTTTGATTTCAGGAAGCATCTACTGTCACTGAAGCTTGAGGTGGAGATTTCATAA
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| Protein seq | MLFVDRMSNPAATVESQVALTPSSTSTPTPTNAPSVEINDSQGTEVEHDNKRLKSAAWQDFVKKKINGAWKAECKWCHNKLGAESRNGTKHLLDHIKTCKSRHARKGLTQSNLKMGIDAEGRVTVGKYVFDQEVARKELALMICLHEYPLSIVDHVGFRRFCGALQPLFKVMTRNTIRKDIIDLFGVNKISISNYFHKLQSRVAITTDLWTATHQKKGYMAITAHFIDDEWKLKSFLLRFIYVPAPHTADLISEIIYEVLADWNLESRLSTITLDNCSTNDKLMENLLGTMLDKLPADTLMLNGSLLHMRCCAHILNLIVKDGMTILDKIIEKVRESVSFWTATPKRHEKFEKQAQQINVKYEKVIALDCKTRWNSTYLMLSTAVLYQDVFTKLGTREKMYTPYCPSNDDWKFARELCDRLKIFYDATEAFSGSKYCTANLFFPKACGIYLAMRKWSTSADPNIITMTKLMSAKYEKYWKDVHGILAIASVLDPRYKLHMLNAMFIQIYGEEVALRKVNAVKEDLYKLVLQYQNHVEEGVGTSDGVNASSSVAPPGGFDLVDDIFDQYMSGQTVASSSQIRTELDLYLEEKPLPRTQDFDIINWWKFGGIRYPTLRQIARDILAIPITTVASESAFSTGGRVITPNRNQLKPDLVEALMCVQAWGRADMLGNFIFAFVSFKFNLSFHVSSISSNCKSHYMLIAEIANKTNALNTVLDDESESVCPTLPLYCFYYYNIQCLVASSNFDFRKHLLSLKLEVEIS |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0521366 | OsNip_02t0521366-00 | Chr02 | 19001980 | 19004365 | + | RAP2018-11-26 | ||
| CDS seq | ATGTTATTTGTGGACAGAATGTCGAACCCTGCTGCCACCGTTGAGTCACAAGTTGCATTGACACCATCTTCCACTTCCACTCCCACTCCAACCAATGCTCCAAGCGTCGAAATAAATGATTCACAAGGTACAGAAGTAGAACATGATAATAAGAGACTGAAATCTGCAGCATGGCAAGATTTTGTTAAGAAGAAAATAAATGGTGCGTGGAAAGCTGAATGCAAATGGTGTCACAACAAGCTTGGAGCTGAAAGTAGAAATGGGACTAAACATTTGTTAGACCATATTAAAACTTGCAAGTCTAGGCATGCTAGAAAAGGTCTAACACAATCCAATTTGAAGATGGGAATAGATGCAGAAGGGAGGGTTACCGTAGGGAAATATGTCTTTGATCAAGAGGTTGCTAGGAAAGAACTTGCACTGATGATATGCCTCCATGAGTACCCACTTTCTATTGTAGACCATGTTGGTTTTCGTAGGTTTTGTGGTGCATTGCAACCTTTGTTCAAGGTTATGACCAGAAACACAATTAGGAAGGATATTATTGACTTGTTTGGGGTTAACAAGATTTCTATCAGTAATTATTTTCACAAGCTTCAGAGCCGTGTGGCCATTACTACTGATTTATGGACAGCAACTCATCAAAAGAAAGGATACATGGCAATCACCGCTCACTTCATCGATGATGAATGGAAATTGAAGAGTTTTCTTTTGAGGTTTATTTATGTACCAGCACCTCATACCGCTGATCTTATAAGTGAAATTATTTATGAGGTTCTTGCTGATTGGAACTTGGAGAGTAGGCTGTCTACTATCACACTTGACAACTGCAGCACCAATGACAAGTTAATGGAGAACCTATTGGGGACAATGCTAGATAAGTTGCCTGCTGATACTCTTATGTTAAATGGTTCATTGCTGCATATGCGTTGTTGTGCACATATTTTGAATTTGATTGTGAAAGATGGAATGACTATCCTAGATAAAATCATTGAGAAGGTTCGTGAGAGTGTTTCATTTTGGACAGCAACACCAAAGAGACATGAGAAATTTGAAAAACAGGCCCAACAAATAAATGTTAAGTATGAGAAAGTAATTGCCCTTGATTGCAAAACTAGATGGAATTCTACTTATCTCATGCTTAGCACTGCAGTTTTGTATCAAGATGTCTTTACAAAACTTGGAACTCGTGAAAAAATGTATACTCCTTATTGTCCATCAAATGATGATTGGAAGTTTGCTAGGGAGCTTTGTGATAGATTGAAGATTTTTTATGATGCAACAGAGGCTTTTTCTGGTAGTAAGTATTGTACTGCAAATCTTTTCTTTCCTAAGGCTTGTGGTATTTATTTGGCTATGAGAAAATGGTCAACTAGTGCTGATCCAAACATTATAACAATGACTAAATTGATGTCAGCCAAATATGAGAAGTATTGGAAGGATGTGCATGGTATTTTGGCTATTGCTAGTGTTTTGGATCCTAGATATAAACTTCATATGTTGAATGCTATGTTTATACAAATCTATGGAGAAGAGGTGGCACTAAGAAAAGTTAATGCTGTGAAAGAAGACTTGTATAAGTTAGTGCTACAATACCAAAATCATGTTGAGGAGGGTGTTGGAACTTCAGATGGAGTTAATGCTTCTTCAAGTGTTGCCCCTCCAGGGGGATTTGATTTGGTGGATGATATATTTGATCAGTATATGTCTGGACAAACTGTTGCCTCTTCCTCACAGATTCGCACTGAGTTAGATTTGTATTTGGAAGAGAAACCGTTGCCTAGGACACAAGATTTTGATATTATCAATTGGTGGAAGTTTGGGGGCATTAGGTACCCAACTTTGAGACAGATTGCCCGGGACATTTTGGCAATCCCTATTACAACAGTAGCATCTGAATCAGCATTTAGTACTGGTGGGAGGGTGATAACTCCAAATCGTAATCAGCTTAAACCTGATCTTGTGGAGGCACTTATGTGTGTGCAAGCATGGGGTCGTGCTGATATGTTAGGTAATTTCATTTTTGCTTTTGTATCGTTCAAGTTTAATTTGTCCTTTCATGTTTCTTCCATTTCATCTAATTGCAAATCACATTATATGTTGATAGCTGAAATTGCTAACAAGACCAATGCATTGAACACGGTACTTGACGATGAATCAGAATCGGTATGTCCTACACTCCCACTTTATTGTTTTTATTACTATAACATACAATGCTTAGTTGCTTCCTCTAATTTTGATTTCAGGAAGCATCTACTGTCACTGAAGCTTGAGGTGGAGATTTCATAA
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| Protein seq | MLFVDRMSNPAATVESQVALTPSSTSTPTPTNAPSVEINDSQGTEVEHDNKRLKSAAWQDFVKKKINGAWKAECKWCHNKLGAESRNGTKHLLDHIKTCKSRHARKGLTQSNLKMGIDAEGRVTVGKYVFDQEVARKELALMICLHEYPLSIVDHVGFRRFCGALQPLFKVMTRNTIRKDIIDLFGVNKISISNYFHKLQSRVAITTDLWTATHQKKGYMAITAHFIDDEWKLKSFLLRFIYVPAPHTADLISEIIYEVLADWNLESRLSTITLDNCSTNDKLMENLLGTMLDKLPADTLMLNGSLLHMRCCAHILNLIVKDGMTILDKIIEKVRESVSFWTATPKRHEKFEKQAQQINVKYEKVIALDCKTRWNSTYLMLSTAVLYQDVFTKLGTREKMYTPYCPSNDDWKFARELCDRLKIFYDATEAFSGSKYCTANLFFPKACGIYLAMRKWSTSADPNIITMTKLMSAKYEKYWKDVHGILAIASVLDPRYKLHMLNAMFIQIYGEEVALRKVNAVKEDLYKLVLQYQNHVEEGVGTSDGVNASSSVAPPGGFDLVDDIFDQYMSGQTVASSSQIRTELDLYLEEKPLPRTQDFDIINWWKFGGIRYPTLRQIARDILAIPITTVASESAFSTGGRVITPNRNQLKPDLVEALMCVQAWGRADMLGNFIFAFVSFKFNLSFHVSSISSNCKSHYMLIAEIANKTNALNTVLDDESESVCPTLPLYCFYYYNIQCLVASSNFDFRKHLLSLKLEVEIS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0525300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g32170 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0521366 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010900 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0011020 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0010870 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0010730 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0010830 | SBH | 4.425262 | 0.000000 | 2.135042 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0315100 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0010610 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0335000 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0011130 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0010740 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0011150 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0011100 | SBH | 0.271833 | 0.457332 | 0.258000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0010780 | SBH | 0.235202 | 1.320058 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G011100 | SBH | 0.021101 | 0.315735 | 0.376226 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0010880 | SBH | 0.833066 | 2.809559 | 1.115728 |
