Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0515100 | OGI:02001240 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:18569792-18573161 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTTTTTAAGTGCAAGTATTTCCGTCAAACAATGTGAGTCTAACACATCATGCTGAAAGCAAATAATAGATCGAATTTACAAACCATACCTAAGCATAGCACTAAGCCAGTGAGAGGCAGCAGTAGCAAACGCGTAGGTCAACATTCCATCAGCTTATTGTTCTTCGCCTGTTTGGTGCGTTTAGGCAATGCTATTCTTTCTCTCTGCAAGGAATTTAGCAATGTTATTCGACAATATATAGCTCAAGGACTGTATTTTTTTTGCACAGGATACCAGCTTATATTGGCAAACCATGCTCAGTAGCCTGCCAGTTTCTGACAGAAATACTGACCAAGAAGCCAAATCACATCCTTCATGCAAACAAAGCCAGCAGTTTTCGCATGAATTTCTTTCACCTTGCGCTTGTGCTACTGCCGCTGAGCTTCATCTGTCCTCCCGTCGGTTCATGCATTGAGCAGGAGAGGCTAACCCTCCTCCGGTTCCTCGCGGAGCTGTCACCGCCACATGATAATGGCCTCGCTGCGTCATGGAGGAATAGGACCGACTGCTGTACCTGGGAAGGGATCATCTGTGATGTGGATGGTGCAGTAACCAAGATCTTGCTGGCCTCAAGAGGCCTTGAAGGGCGCATCTCGTCATCCCTGAGCGAGCTCACCAGCTTGTCGCGGCTCAACCTGTCATACAACTCACTCTCCGGTGGGCTTCCGCCAGAGCTGATATTCTCTGGCAGCATCGTTGTCCTCGATGTCAGCTTCAACCGCCTCGGCGGGGAACTACAAGAGGTAGACTCATCATCATCTGATTGGCCACTCCAGGTACTGAATATCTCAAGTAATCTGTTTACTGGAGCATTTCCATCCACCACATGGGAGAAAATGAGCAACCTAGTAGCGATCAATGCAAGCAACAACAGCTTCACTGGGCACATACCTTCCTCTTTCTGCATCAGCTCACTATCCTTTGCTGCTCTTGACCTTTGCTACAACCAATTCAGTGGCGAAATCCCCGCTGGGATAGGTAAATGCTCTGCACTTAGAATGCTCAAAGCTGGCCACAACAACATTAGTGGGGCCCTCCCGGATGATCTCTTCCATGCCACATCATTGGAGTACCTCTCTTTTCCTAACAATGGTTTGCAAGGAACAATTAAGCTTGTGATAAAGCTCAGTAATCTAGTTTTTCTTGATCTTGGGGGGAACAGTTTCAGTGGCAAGGTCCCAGAATCTATAGGCGAGCTCAAGAAACTGGAGGAGCTTCGCATGGACCATAACTACATATCTGGGGAGCTGCCATCAACCTTGGCCAATTGCACAAATCTAGCAGCCATCGTCCTCGTGAGCAACAAATTCACAGGAGACCTTGCTAAGGTTAACTTCTCCAACCTACCAAATCTGAAAACTTTAGATCTTTGCACGAATTACTTCACCGGCACAATTCCAGCAAGTATCTACTCATGCAGTAATTTAACTTGGTTGCGGTTATCTTTCAATAAGCTTCACGGTCAGTTGCCAGAGGAGACAGAAAAGTTGAAATCCCTTACCTTTGTATCTCTTTCGTACAACTACTTTACCAATATCACAGGTGCACTTCATATACTCAAGAGCTTAAGGAACCTCACTACCTTGCTAATTGGGGGCAATTTCATGCATGAAACTATTCACAGGATGAAACAATTCATGGTCTTGAGAATCTTCAGGTTCTTGGCATAAATGATTGTGCACTGACTGGAAAAATACCTAGTTGGCTCTCAAAGCTAAAAAAATTGGAACTTCTACTTTTATACAACAATCAACTTAGTGGACCAATACCAACCTGGATCAAGAGCCTAAACTACCTTAAGTATGTAGACTTATCCAATAATAGCCTTATAGGGGAAATACCAACATCACTAACAGAGATGCCAATGCTAAGATCAGACAAGATTGCGGATCACTCAAACCCAAGACTCTTTCGGATGCCAGTTTTTGTGGCTCCATCTCTTCAGTACCATACGGCTAATGCATTCCCTAAAATGTTGAATCTAGGTAACAACAAATTCAGTGGTGTGATCCCCATGGAGATTGGTCAGTTGAAAGCGCTCCTCTCACTCAACTTGAGCTTCAACAACTTACATGGGGAGATCCCGCAATCGGCCAGCAACCTCAAGAATCTGATGGTGCTAGACCTGTCTTCCAACCATCTGACAGGTGCAATCCCTTCGTCACTGGCGAACTTGCACTTTCTTTCTAACTTCAACATTTCTTACAATGACCTTGAAGGGCCTGTACCAACTATAGGCCAGTTCAGCACATTTCCAACTTCCAGTTTTGCTGGGAACCCGAAGCTATGCAGCCCTATGCTTTTGCACCGCTGCAATTCAGCAGGAGCAGCTCCAGTCTCCACAATCCCCACAAAGCAGTACATTGACAAGTTTGTCTTCGCAATTGCATTTGGCATGTTCTTTGGAGTAGGAGTGCTATATGATCAAATTGTTGTGTCCAGATTCTTTGGCTAAACCAGACAATAATTTGTGCTGGCTTGTACTGTTGTACATTACGCAATGGGTCACAGAATTGAAATAAGCAACCAACAGCCGACTTTCTAATTAATATAACCATCTCCAGGATTCCAACCGTGTAGGATATGGTCGATGAGTCGGTGGAAACATAGTAAACTGAAATCATAGATTCCAACTGTGTCATATGGACTATGGTCGACGAGTTTGTGGAAGCATAGTAAACTGAAATCATAGTTAAAAGAACTGTGTCCATATTGTGTGGGGATGTCAATGCTTACCGATATAATCTATACTAAATACTATATACGGAATATTTTTTCTGCAATTTGCAACAAGGTATAGTTAATTAGGAAAAACTGGGTGATGGTTCCTTTTTTACTTAAAATAGGACACTTCTTTTTTATATAAAACGTCAGTAACAGCCTGACCGATTGAAAAAAAATTACAATTAATTATGGAAAATTGGGGTTACGTTTTCTCATTAAAATGAGACACTTCTCTATATAAAACGTTGATAACGCACTGACCGTTCGAAAAAAAATTGCAACAAGGTGACCGTAAATCTGCAACTGACAACTAGATCTCTGCAAAACTAGAGAACAAAAAAACATGTAAGTGGAAACTACCGAAGCTCACACGAGCACAATCCCAAGATCGGTAAAACGAACATGATGATTCTTTCACAAGAGCTTTGCAGCTAGCCTTGATTGATTTACCTCAGGAGAAGAGCGAGCGAGCATAGCCCACGAACTCACAGGAGTCGCAGGATGCGACCCTCGGGCCTTGGCCCTGCGCCGATCCGATCCCATCCCATCCGATCGCCATGCCTGCCGAGCGCCGCCGAGCGCCGGCCGCCCGCTTCCTTTCGTTGG
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| CDS seq | ATGCAGAAAGAGGAAGGTATGTGCCCAGTGAAGCTGTTGTTGCTTGCATTGATCGCTACTAGGTTGCTCATTTTCTCCCATGTGGTGGATGGAAATGCTCCAGTAAACAGATTACTTGAGATATTCAGTACCTGGAGTGGCCAATCAGATGATGATGAGTCTACCTCTTGTAGTTCCCCGCCGAGGCGGTTGAAGCTGACATCGAGGACAACGATGCTGCCAGAGAATATCAGCTCTGGCGGAAGCCCACCGGAGAGTGAGTTGTATGACAGGTTGAGCCGCGACAAGCTGGTGAGCTCGCTCAGGGATGACGAGATGCGCCCTTCAAGGCCTCTTGAGGCCAGCAAGATCTTGGTTACTGCACCATCCACATCACAGATGATCCCTTCCCAGGTACAGCAGTCGGTCCTATTCCTCCATGACGCAGCGAGGCCATTATCATGTGGCGGTGACAGCTCCGCGAGGAACCGGAGGAGGGTTAGCCTCTCCTGCTCAATGCATGAACCGACGGGAGGACAGATGAAGCTCAGCGGCAGTAGCACAAGCGCAAGGTGA
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| Protein seq | MQKEEGMCPVKLLLLALIATRLLIFSHVVDGNAPVNRLLEIFSTWSGQSDDDESTSCSSPPRRLKLTSRTTMLPENISSGGSPPESELYDRLSRDKLVSSLRDDEMRPSRPLEASKILVTAPSTSQMIPSQVQQSVLFLHDAARPLSCGGDSSARNRRRVSLSCSMHEPTGGQMKLSGSSTSAR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0515100 | OsNip_02t0515100-01 | Chr02 | 18569792 | 18573161 | - | RAP2018-11-26 | ||
| CDS seq | ATGCAGAAAGAGGAAGGTATGTGCCCAGTGAAGCTGTTGTTGCTTGCATTGATCGCTACTAGGTTGCTCATTTTCTCCCATGTGGTGGATGGAAATGCTCCAGTAAACAGATTACTTGAGATATTCAGTACCTGGAGTGGCCAATCAGATGATGATGAGTCTACCTCTTGTAGTTCCCCGCCGAGGCGGTTGAAGCTGACATCGAGGACAACGATGCTGCCAGAGAATATCAGCTCTGGCGGAAGCCCACCGGAGAGTGAGTTGTATGACAGGTTGAGCCGCGACAAGCTGGTGAGCTCGCTCAGGGATGACGAGATGCGCCCTTCAAGGCCTCTTGAGGCCAGCAAGATCTTGGTTACTGCACCATCCACATCACAGATGATCCCTTCCCAGGTACAGCAGTCGGTCCTATTCCTCCATGACGCAGCGAGGCCATTATCATGTGGCGGTGACAGCTCCGCGAGGAACCGGAGGAGGGTTAGCCTCTCCTGCTCAATGCATGAACCGACGGGAGGACAGATGAAGCTCAGCGGCAGTAGCACAAGCGCAAGGTGA
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| Protein seq | MQKEEGMCPVKLLLLALIATRLLIFSHVVDGNAPVNRLLEIFSTWSGQSDDDESTSCSSPPRRLKLTSRTTMLPENISSGGSPPESELYDRLSRDKLVSSLRDDEMRPSRPLEASKILVTAPSTSQMIPSQVQQSVLFLHDAARPLSCGGDSSARNRRRVSLSCSMHEPTGGQMKLSGSSTSAR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.573973 | 0.000000 | 1.569618 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g31074 | RBH | 0.388368 | 0.275872 | 0.404648 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0515100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004180 | RBH | 0.000000 | 0.000000 | 0.454565 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004430 | SBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0018880 | RBH | 0.0 | 3.259444 | 2.903937 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004180 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0018600 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0018310 | RBH | 0.0 | 0.092752 | 1.065631 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0018860 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0018570 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0018970 | RBH | 4.881355 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0018720 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0018500 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G018900 | RBH | 0.000000 | 0.0 | 1.545075 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0018600 | RBH | 0.0 | 0.000000 | 3.341595 |
