Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0513700 | OGI:05054710 | 11/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:18495340-18498553 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAATAAGTGCTAGACCACAAATAGTGCATAGACCACAAATTAATAGTTCAACGGTACATCCAAACTCGCAATGACCATAGAAGTTCACATCCAGCCCACAGGGCACGGGCACACAACTAGTTTATAAATAACAAGTTCACAGCCACAAATAGAATAATTAGGATAGACCGATAAACTTGTTCAGTACTCTAAGTTCAATTCAATAATAACTAGATAGGTAGATCAATTTAATTGCTGCTTGTATCAATCATGGTAACTGAAGTGGCTGAAGGTTCAGCATCAGCAGACAGATCCAATGCACCAAGATCTTCTAGCACCCTCTCAAGGTCAGGCTCATCAAGTGAAAGAGCAGCTTCTTGAAGAAAATCAGCACCACCCTCGAACATCTCAAAGCTGTCTCCTCCAACATCCCACATTCTTGATGGACCAGTACAGTACTCTTCAGATTTCCTGGAAAGAAGACGCAAATTCTGGTGCACAAACACCAAATCTTCAGCACGTCCAGGGTTTAGCCTACAATAAAGCAATTGTAGTCACTGATCAGTTCCATGCATTTCAAACATACAAGAAATTTACTAAGTAAGAGAAGGAACAGAACTTGTTTCTCATTGAATTATGGATCAAACCATAGGTGCTCCAATTTCTTTCAGCACAAGATGATGATGTTGGTTGTCCAAGTAATTTTAGCGCCAATTTTTTTAACTCAGGGGCAGAGTTACCATAAATTCCCCACCATTGCTTTGCATCCAAATGAGCTCTATCCTTGATTGAGTCAAAGGAATTAAACCCATTTCCAAACAGCGAGAAATCTGCAAACTGCTGCTTGATCTTCCTTAATTCATCACCAGCAAAATACCTTCTGAAGCATTTGTTTCTCATTTCTGAAATTTCTGCATCCATGTGAGGAGCTTCACGGGTTGGAACCTCAGCCAACCAGCTTTCGCAGTAGTACCTACATTTTATAAAAACAATTAATAGGCTAACAACGACTACAAATTATGGAAACAAACATTTAAAAGTAGAAGCAGAACATTACTTGGGGTTCAGTGAGTGTGCCAAGCAATGCAGGGGGGTATTACTTTTTGCCCATCGAGAGTACAAGATCTCTTGCACATGAAAGAAAAAGGAGGAATGCTCATTTAGTTCTTTCCCTTCATGACGATAAACTATTTTTTTCACCTTATCTATCATTGAATCCCACATCTCATAAACCAAATGGAGGCAAGGTTTGTCGGTGTCAGCTGCACGAATCATGGAATAGATAGGATCAGTGAAATCTAGGATATACTGCACCTTATCCCACCACACATCATTTAGAACCTTCTCTTTGACTTGCTGTGCTTGAACTTGATTGTCTTCCCTAATAAGAATTCCATTTTTCACTCACTACCATCAAGATTAGAGATTCTTTGATAGCACGGAACCTCTTTAACATTACAATGGTAGAAGCAAATCTTGTATCAACAATGGCAAGAAATTTTAGCTTACTGAACTCATTGAACATGGAGAGCCTCATTGAGTGGTTCATGATGAAGTTTTTTATGAAAGAAGAATCTGCTGCTACCTCAGTGATCCACTGAAATTCTTCATAAGCATCCCCACTTGAACTCTTGGCTGCACATATGTTCTTCAAGGCCAGGTTCAAGGTATGGACAACACACGGCGTCCAAAAAATGTGGCTGTACCTCTGTTCAACTATCAACCCAGCAGCCCTGCAATTAGCTGCATTGTCAGTGATAACCTGTACCACATTCTTTGGTCCAACATCCTCAATGACTGCAATCATCTTCTCAGCAATATATTCCTTCCTCTTAATTTCTCCTTCAGTGTTGATTGCTCTTAAAAACATTGGCCCATCTTCTGTCACTGCTAGAAAATTCAAGAGTGGGCGCCTTTGAGCATCAGACCACCCATCGGACACAATGCTCACACCTTTTACAGGCCATGTCGACTTAAGGGGATTTAACAACCGCTCAACATGTGTCTTCTCTTGAACAAGAAGAGTAGTTCGTAGCTTGTTGTAACTTGGAGGGGAATAGCCCCCAAGCGCATTGTTGCAAGCAAACATAAAAGCCTTCCTGAAATATGGGTTTCTTGCAACATTGAAAGGAATGCCTACAGACCAAACCAAATGTCCAAATATTAGTCACATTTGTAACACAAATATGAGAATGTATGAGTTAATAAAACGTACTAAACTCTAGTCTAACCTGCTGTGTAGAACATTCTCGCAATCAAAGCATCAAGGTTGGAACGAGTATCTGAATTGAAGCTAGACTCAATAGCTGAAACAGCCCTTCTCTTCCCCCTACTCGCGCCCTCTGCTGGCAGTGGGATGTCCTTAGGCAAGTTCCTTTCAGCAACTGCTGCAGCTCTAGCCATTTCATCATGAAGTTGACTAAGAACATCGATTGTTACCTTTGGACAGGGAGCTACACCATTAGATCCCACCTTCAAGAGATGTGCTTTAACTCTTGAGTAGCTCCCATGCATAATATTACCACAAAGCCTGCATCTAAACCTTACATTCCCTCCCTGGCCTTTACCTGTTTTCTCCATTAACTCAACATACCTCCACAATGGCTTGTTTTCATTGTCATTGGGAGGAATCACACGGCAAGCATTCAAGAGGTTGCTTGCCCTTGCTGGACCACTAGTTCCTCTTGATAAATCAGTAGCAGAATTAGGAGCCGGACTACCACTAGGATGGCTAGATGCACTAGCACTAGCACTTGAGCTTCCAGTTCGATAATCCATGGGATCTAACAAAAAAAAAGATAGTACTTATACTAAGAAAAGATGAAGGGCATTGCATTCTTGCAGATCCACTAAAACTCTAAACGAAATAAGAAGAGCATTGCAGTATTGCTCTGCTGCAGTGCATAGAATGCTAAAAGAGGGGATTTATTATTCACCTCAACAAGGGAACGAACAGGAAAACAGATCGGCGACGACAGTGTTGTGCCGACGTCACAGTAGGAGGCGGCGAGGCGCAGCCCAGTGCGCGGCGCCGGCGCAGCTCGGCGGCGGCGACGGTTGACGAGGCAGCCCGGCAGCAGCGACGGCACTGGAGCACGTGAGGGGCGTTGGTGGTGACGCTGTTGGGCCAGCATCGGAGGTGGAGAGCAGCGTGGCGGTGCCGGCGCAGCCCGTCGGCGGCAATGGCTGATGGGGCGGCGGCGGCGCTGGAGCGTTGGGGAAGAGAGGCGAGAGT
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| CDS seq | CCCATGGATTATCGAACTGGAAGCTCAAGTGCTAGTGCTAGTGCATCTAGCCATCCTAGTGGTAGTCCGGCTCCTAATTCTGCTACTGATTTATCAAGAGGAACTAGTGGTCCAGCAAGGGCAAGCAACCTCTTGAATGCTTGCCGTGTGATTCCTCCCAATGACAATGAAAACAAGCCATTGTGGAGGTATGTTGAGTTAATGGAGAAAACAGGTAAAGGCCAGGGAGGGAATGTAAGGTTTAGATGCAGGCTTTGTGGTAATATTATGCATGGGAGCTACTCAAGAGTTAAAGCACATCTCTTGAAGGTGGGATCTAATGGTGTAGCTCCCTGTCCAAAGGTAACAATCGATGTTCTTAGTCAACTTCATGATGAAATGGCTAGAGCTGCAGCAGTTGCTGAAAGGAACTTGCCTAAGGACATCCCACTGCCAGCAGAGGGCGCGAGTAGGGGGAAGAGAAGGGCTGTTTCAGCTATTGAGTCTAGCTTCAATTCAGATACTCGTTCCAACCTTGATGCTTTGATTGCGAGAATGTTCTACACAGCAGGCATTCCTTTCAATGTTGCAAGAAACCCATATTTCAGGAAGGCTTTTATGTTTGCTTGCAACAATGCGCTTGGGGGCTATTCCCCTCCAAGTTACAACAAGCTACGAACTACTCTTCTTGTTCAAGAGAAGACACATGTTGAGCGGTTGTTAAATCCCCTTAAGTCGACATGGCCTGTAAAAGGTGTGAGCATTGTGTCCGATGGGTGGTCTGATGCTCAAAGGCGCCCACTCTTGAATTTTCTAGCAGTGACAGAAGATGGGCCAATGTTTTTAAGAGCAATCAACACTGAAGGAGAAATTAAGAGGAAGGAATATATTGCTGAGAAGATGATTGCAGTCATTGAGGATGTTGGACCAAAGAATGTGGTACAGGTTATCACTGACAATGCAGCTAATTGCAGGGCTGCTGGGTTGATAGTTGAACAGAGGTACAGCCACATTTTTTGGACGCCGTGTGTTGTCCATACCTTGAACCTGGCCTTGAAGAACATATGTGCAGCCAAGAGTTCAAGTGGGGATGCTTATGAAGAATTTCAGTGGATCACTGAGGTAGCAGCAGATTCTTCTTTCATAAAAAACTTCATCATGAACCACTCAATGAGGCTCTCCATGTTCAATGAGTTCAGTAAGCTAAAATTTCTTGCCATTGTTGATACAAGATTTGCTTCTACCATTGTAATGTTAAAGAGGTTCCGTGCTATCAAAGAATCTCTAATCTTGATGGTAGTGAGTGAAAAATGGAATTCTTATTAG
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| Protein seq | PMDYRTGSSSASASASSHPSGSPAPNSATDLSRGTSGPARASNLLNACRVIPPNDNENKPLWRYVELMEKTGKGQGGNVRFRCRLCGNIMHGSYSRVKAHLLKVGSNGVAPCPKVTIDVLSQLHDEMARAAAVAERNLPKDIPLPAEGASRGKRRAVSAIESSFNSDTRSNLDALIARMFYTAGIPFNVARNPYFRKAFMFACNNALGGYSPPSYNKLRTTLLVQEKTHVERLLNPLKSTWPVKGVSIVSDGWSDAQRRPLLNFLAVTEDGPMFLRAINTEGEIKRKEYIAEKMIAVIEDVGPKNVVQVITDNAANCRAAGLIVEQRYSHIFWTPCVVHTLNLALKNICAAKSSSGDAYEEFQWITEVAADSSFIKNFIMNHSMRLSMFNEFSKLKFLAIVDTRFASTIVMLKRFRAIKESLILMVVSEKWNSY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0513700 | OsNip_02t0513700-00 | Chr02 | 18495340 | 18498553 | - | RAP2018-11-26 | ||
| CDS seq | CCCATGGATTATCGAACTGGAAGCTCAAGTGCTAGTGCTAGTGCATCTAGCCATCCTAGTGGTAGTCCGGCTCCTAATTCTGCTACTGATTTATCAAGAGGAACTAGTGGTCCAGCAAGGGCAAGCAACCTCTTGAATGCTTGCCGTGTGATTCCTCCCAATGACAATGAAAACAAGCCATTGTGGAGGTATGTTGAGTTAATGGAGAAAACAGGTAAAGGCCAGGGAGGGAATGTAAGGTTTAGATGCAGGCTTTGTGGTAATATTATGCATGGGAGCTACTCAAGAGTTAAAGCACATCTCTTGAAGGTGGGATCTAATGGTGTAGCTCCCTGTCCAAAGGTAACAATCGATGTTCTTAGTCAACTTCATGATGAAATGGCTAGAGCTGCAGCAGTTGCTGAAAGGAACTTGCCTAAGGACATCCCACTGCCAGCAGAGGGCGCGAGTAGGGGGAAGAGAAGGGCTGTTTCAGCTATTGAGTCTAGCTTCAATTCAGATACTCGTTCCAACCTTGATGCTTTGATTGCGAGAATGTTCTACACAGCAGGCATTCCTTTCAATGTTGCAAGAAACCCATATTTCAGGAAGGCTTTTATGTTTGCTTGCAACAATGCGCTTGGGGGCTATTCCCCTCCAAGTTACAACAAGCTACGAACTACTCTTCTTGTTCAAGAGAAGACACATGTTGAGCGGTTGTTAAATCCCCTTAAGTCGACATGGCCTGTAAAAGGTGTGAGCATTGTGTCCGATGGGTGGTCTGATGCTCAAAGGCGCCCACTCTTGAATTTTCTAGCAGTGACAGAAGATGGGCCAATGTTTTTAAGAGCAATCAACACTGAAGGAGAAATTAAGAGGAAGGAATATATTGCTGAGAAGATGATTGCAGTCATTGAGGATGTTGGACCAAAGAATGTGGTACAGGTTATCACTGACAATGCAGCTAATTGCAGGGCTGCTGGGTTGATAGTTGAACAGAGGTACAGCCACATTTTTTGGACGCCGTGTGTTGTCCATACCTTGAACCTGGCCTTGAAGAACATATGTGCAGCCAAGAGTTCAAGTGGGGATGCTTATGAAGAATTTCAGTGGATCACTGAGGTAGCAGCAGATTCTTCTTTCATAAAAAACTTCATCATGAACCACTCAATGAGGCTCTCCATGTTCAATGAGTTCAGTAAGCTAAAATTTCTTGCCATTGTTGATACAAGATTTGCTTCTACCATTGTAATGTTAAAGAGGTTCCGTGCTATCAAAGAATCTCTAATCTTGATGGTAGTGAGTGAAAAATGGAATTCTTATTAG
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| Protein seq | PMDYRTGSSSASASASSHPSGSPAPNSATDLSRGTSGPARASNLLNACRVIPPNDNENKPLWRYVELMEKTGKGQGGNVRFRCRLCGNIMHGSYSRVKAHLLKVGSNGVAPCPKVTIDVLSQLHDEMARAAAVAERNLPKDIPLPAEGASRGKRRAVSAIESSFNSDTRSNLDALIARMFYTAGIPFNVARNPYFRKAFMFACNNALGGYSPPSYNKLRTTLLVQEKTHVERLLNPLKSTWPVKGVSIVSDGWSDAQRRPLLNFLAVTEDGPMFLRAINTEGEIKRKEYIAEKMIAVIEDVGPKNVVQVITDNAANCRAAGLIVEQRYSHIFWTPCVVHTLNLALKNICAAKSSSGDAYEEFQWITEVAADSSFIKNFIMNHSMRLSMFNEFSKLKFLAIVDTRFASTIVMLKRFRAIKESLILMVVSEKWNSY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0658400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g30960 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0513700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0013120 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0013160 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0024970 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0019650 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0176000 | RBH | 16.5226555 | 14.4883925 | 112.092533 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0019510 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0018890 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0031920 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
